Identifiers and Description
Gene Model Identifier
TTHERM_00989490Standard Name
VPS42 (Vacuolar Protein Sorting 4-2)Aliases
PreTt07839 | 185.m00060 | VPS4BDescription
AAA-type ATPase; ATPase- AAA family protein; associated with membrane vesicle trafficking; putative function in programmed nuclear deathGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Cellular Component
- vacuole (IDA) | GO:0005773 | Ref:SUPR000328
- macronucleus (IDA) | GO:0031039 | Ref:SUPR000328
- cytoplasmic vesicle (IDA) | GO:0031410 | Ref:SUPR000328
Molecular Function
- ATPase activity (IEA) | GO:0016887
- ATP binding (IEA) | GO:0005524
Domains
- ( PF04212 ) MIT domain
- ( TIGR02880 ) CbbX protein
- ( PF00004 ) ATPase, AAA family
- ( TIGR01242 ) 26S proteasome subunit P45 family
- ( TIGR01241 ) ATP-dependent metallopeptidase HflB
- ( PF09336 ) Vps4 C terminal oligomerisation domain
- ( TIGR02237 ) DNA repair and recombination protein
- ( PF02189 ) Immunoreceptor tyrosine-based activation motif
- ( PF07724 ) ATPase family associated with various
- ( PF07726 ) ATPase family associated with various
- ( PF07728 ) ATPase family associated with various
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 11.4%
TetraMine Data
TTHERM_00989490
WebApollo
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Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_02920.1 9.997093137033517e-262 ATPase, AAA family protein (49
3 aa)
Oxytricha Contig13722.0.g102 3.998176907651524e-145 ATPase family associated with
various cellular activities (A
AA)
SGD YPR173C 1.000157752625888e-137 VPS4 AAA-ATPase involved in mu
ltivesicular body (MVB) protei
n sorting, ATP-bound Vps4p loc
alizes to endosomes and cataly
zes ESCRT-III disassembly and
membrane release; ATPase activ
ity is activated by Vta1p; reg
ulates cellular sterol metabol
ism
DictyBase DDB_G0284347 1.0001366335892501e-125 vps4 on chromosome: 4 position
1865073 to 1866634
WormBase WBGene00021334 3.9996672065071595e-120 locus:vps-4 status:Confirmed
UniProt:Q9BL83 protein_id
:CCD68056.1
Stentor Coeruleus SteCoe_15482 1.580420060273613e-61
General Information
No Data fetched for General Information
Associated Literature
Sequences
>TTHERM_00989490(coding)
ATGAGCAATAACCCTATGATGTAATTTAGAGACATCGCTCTCTAAAAAATTACTCAAGGT
ATTAACATCTTTAATACCAAGAAGGATAACATTAATGAAAGAGATTAAGGTTATAGGTTG
ATGGTTTCTGGTCTTGAAGACTTAATCAAGTATAGAAAGCAAGAAACAAATGTTGATATT
TAAAATATTTTAAAGCCAAAGATAGATGAATATTTAAAGCAAGCAGCTGCCATGAAAGCT
GAAATTTCTGCCTAATAACAGAACATTAATCAATAGATTCAAAAGCAATCTTAATTTAGC
TATCAAGCAAACAATTAAAATTTGAATAATATTAACACTAATATGAATAATAATAATAAT
CAAAATTAATATAAGCCTCCAGTTAACAACAACAACAACAACAATAATAGCAATAACACC
AATAACAATAATGGTGGAAATAACTAAAACAATAACTAAGGAAAAAGTTAAATCAAGGAA
GGTGATAAAGATAATGCTAAGTTTGAACAAGCATTAGGTGAAGCAATTGTTACTGAAAAG
CCAAATGTTCACTGGTCTGATGTTGCTGGTTTAGAAAATGCTAAGAAAGCACTTAATGAA
GCAGTTATCCTACCCATCAGATTCCCTCATATATTCTAAGGTATGATCAAGCCTTGGAGA
GGTATTTTGTTATATGGACCTCCAGGTACTGGTAAAACATTCTTGGCTAAGGCTTGTGCA
ACAGAATGTGATGCTACCTTCTTCTCTATTTCCTCCTCTGATTTAATTTCTAAGTGGGTT
GGTGAATCTGAAAAGTTAATTAAGACTTTGTTTAAAATGGCCAGAGAGAAAAAACCTTCT
ATTATATTTATTGACGAAATAGATTCAATGACTGGAAATAGATCTGAAGGTGAGAATGAA
GCATCCAGAAGAGTCAAAACTGAATTTTTAGTTTAAATGCAAGGTGTTGGCAATGATGAC
ACTGGTGTTCTTGTCCTTGGTGCTACAAACGTTCCTTGGGGTTTAGATCCTGCTATTAGA
AGAAGATTTGAAAAAAGAATTATGATTCCTTTACCAGAAAAGGAAGCTAGATTCTAATTG
ATTGACAATCTCTTGAATAAAACTCCCAACTGCATTACATAAGAAGAAAGATTATACATT
GCAGAAAGAACTGAAGGTTTTTCAGGTTCTGATATATCTATTTTAGTTAGAGAAGCTTCA
TATGAGCCTCTGAGAATAGCATAAAGAGCCACTAAATTCAAAAAGATTTAAGACAAAGAT
GGCTAACCTAAGTATGTTGCTTGTGCTCCTAGTGATCCCTAAGGTGAATCAAAAGTATTA
ATGGATATATAAGGTAGTATGTTAAAATTGTAAGATGTCAGTATAGATCACTTCGAATTA
GCCTTGTAATCTTGTAAACCCTCAGTCTCTGAAAAAGATATAGAGAGACAAATTGAATTC
ACTAAAGAATTCGGCCAAGATGGTTGA>TTHERM_00989490(protein)
MSNNPMMQFRDIALQKITQGINIFNTKKDNINERDQGYRLMVSGLEDLIKYRKQETNVDI
QNILKPKIDEYLKQAAAMKAEISAQQQNINQQIQKQSQFSYQANNQNLNNINTNMNNNNN
QNQYKPPVNNNNNNNNSNNTNNNNGGNNQNNNQGKSQIKEGDKDNAKFEQALGEAIVTEK
PNVHWSDVAGLENAKKALNEAVILPIRFPHIFQGMIKPWRGILLYGPPGTGKTFLAKACA
TECDATFFSISSSDLISKWVGESEKLIKTLFKMAREKKPSIIFIDEIDSMTGNRSEGENE
ASRRVKTEFLVQMQGVGNDDTGVLVLGATNVPWGLDPAIRRRFEKRIMIPLPEKEARFQL
IDNLLNKTPNCITQEERLYIAERTEGFSGSDISILVREASYEPLRIAQRATKFKKIQDKD
GQPKYVACAPSDPQGESKVLMDIQGSMLKLQDVSIDHFELALQSCKPSVSEKDIERQIEF
TKEFGQDG>TTHERM_00989490(gene)
ATGAGCAATAACCCTATGATGTAATTTAGAGACATCGCTCTCTAAAAAATTACTCAAGGT
ATTAACATCTTTAATACCAAGAAGGATAACATTAATGAAAGAGATTAAGGTTATAGGTTG
ATGGTTTCTGGTCTTGAAGACTTAATCAAGTATAGAAAGCAAGAAACAAATGTTGATATT
TAAAATATTTTAAAGCCAAAGATAGATGAATATTTAAAGCAAGCAGCTGCCATGAAAGCT
GAAATTTCTGCCTAATAACAGAACATTAATCAATAGATTCAAAAGCAATCTTAATTTAGC
TATCAAGCAAACAATTAAAATTTGAATAATATTAACACTAATATGAATAATAATAATAAT
CAAAATTAATATAAGCCTCCAGTTAACAACAACAACAACAACAATAATAGCAATAACACC
AATAACAATAATGGTGGAAATAACTAAAACAATAACTAAGGAAAAAGTTAAATCAAGTAA
AAAGTTAATTTTGTTAGGATGATTTTTTTTAATTGTTTTTTATATCGATAGGGAAGGTGA
TAAAGATAATGCTAAGTTTGAACAAGCATTAGGTGAAGCAATTGTTACTGAAAAGCCAAA
TGTTCACTGGTCTGATGTTGCTGGTTTAGAAAATGCTAAGAAAGCACTTAATGAAGCAGT
TATCCTACCCATCAGATTCCCTCATATATTCTAAGGTATGATCAAGCCTTGGAGAGGTAT
TTTGTTATATGGACCTCCAGGTACTGGTAAAACATTCTTGGCTAAGGCTTGTGCAACAGA
ATGTGATGCTACCTTCTTCTCTATTTCCTCCTCTGATTTAATTTCTAAGTGGGTTGGTGA
ATCTGAAAAGTTAATTAAGACTTTGTTTAAAATGGCCAGAGAGAAAAAACCTTCTATTAT
ATTTATTGACGAAATAGATTCAATGACTGGAAATAGGTAAAAATATTACTTATGAAAATT
GTGACAATTTCTTGATTCATTCATAGATTATTTTTTTTTTAAATGTTCATTTTTTTTATT
GACAGTTCAAATCAAATATTTGAAATATGTTGATGATTGCTTGAAAAAATATATCATTTT
TTAACTAAAAAATTGAATTTGCTTATGATTTATTGTAATAAAAAGATCTGAAGGTGAGAA
TGAAGCATCCAGAAGAGTCAAAACTGAATTTTTAGTTTAAATGCAAGGTGTTGGCAATGA
TGACACTGGTGTTCTTGTCCTTGGTGCTACAAACGTTCCTTGGGGTTTAGATCCTGCTAT
TAGAAGAAGGTAAAAACAATTATTGAAGTTAGTGAATGTGTTTTTTATTTATAAATTTTC
AAAAAATAATTAGATTTGAAAAAAGAATTATGATTCCTTTACCAGAAAAGGAAGCTAGAT
TCTAATTGATTGACAATCTCTTGAATAAAACTCCCAACTGCATTACATAAGAAGAAAGAT
TATACATTGCAGAAAGAACTGAAGGGTATTTATCCATTTTATATTATATTAATTTTTAAA
CTTGTTTATTAAAAATAGTTTTTCAGGTTCTGATATATCTATTTTAGTTAGAGAAGCTTC
ATATGAGCCTCTGAGAATAGCATAAAGAGCCACTAAATTCAAAAAGATTTAAGACAAAGA
TGGCTAACCTAAGTATGTTGCTTGTGCTCCTAGTGATCCCTAAGGTGAATCAAAAGTATT
AATGGATATATAAGGTAGTATGTTAAAATTGTAAGATGTCAGTATAGATCACTTCGAATT
AGCCTTGTAATCTTGTAAACCCTCAGTCTCTGAAAAAGATATAGAGAGACAAATTGAATT
CACTAAAGAATTCGGCCAAGATGGTTGA