Identifiers and Description

Gene Model Identifier

TTHERM_00036960

Standard Name

VPS41 (Vacuolar Protein Sorting 4-1)

Aliases

PreTt14431 | 2.m02094 | 3825.m02804

Description

vacuolar protein sorting-associated protein 4b; VPS4-like ATPase- AAA family protein; associated with vesicle formation and programmed nuclear death; localizes to cytoplasm and oral apparatus during growth and to parental macronucleus during conjugation

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• macronucleus (IDA) | GO:0031039 | Ref:SUPR000323
• cytoplasm (IDA) | GO:0005737 | Ref:SUPR000323
• oral apparatus (IDA) | GO:0031912 | Ref:SUPR000323

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.2%

TetraMine Data

TTHERM_00036960

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_00957.1	9.997093137033517e-262	ATPase, AAA family protein (44 4 aa)
Oxytricha	Contig13722.0.g102	3.0011260078469234e-135	ATPase family associated with various cellular activities (A AA)
SGD	YPR173C	9.001601097193671e-134	VPS4 AAA-ATPase involved in mu ltivesicular body (MVB) protei n sorting, ATP-bound Vps4p loc alizes to endosomes and cataly zes ESCRT-III disassembly and membrane release; ATPase activ ity is activated by Vta1p; reg ulates cellular sterol metabol ism
WormBase	WBGene00021334	1.9999788875029746e-125	locus:vps-4 status:Confirmed UniProt:Q9BL83 protein_id :CCD68056.1
DictyBase	DDB_G0284347	9.996261361959507e-120	vps4 on chromosome: 4 position 1865073 to 1866634
Stentor Coeruleus	SteCoe_25506	1.733141042341547e-58

General Information

No Data fetched for General Information

Associated Literature

1. Ref:SUPR000323

Sequences

>TTHERM_00036960(coding)
ATGTTTTACGGAGGTAATAACGCTCCCTCATTTAAGTTAGATAATACTTAAATTCGTAAT
GAAACATAGTACCTGATTGAGAAAGGTAGAAGATCTTTCAATGAAGGTGATACAATTGAA
GAAAAGGATAAGGGTATTTCAACCTTTTTACAAGGTTTAAAGAAGTTAGAACTATGGATA
TAAAGAGAAACTGATACTTTAATTCTAAATACTTTAAAAACCTAATACCAAAATAACTAT
AAAGAAGTAGAAACTATGCTTACAAAATTAGAATAAATTAAAAAAAATGGAAACTAGCCT
ATGGCAATAGCATAAGGCGGCGGCGGTGGTAACAACAATAGTAACAAAGATGAAAACACT
AAATTTAAGGAAGCTTTGTAAGAAACAATTGTGCCCGAAAAACCTAACATAAAATGGGAT
GATATTGCTGGTTTAGTGAAGGCTAAGGAATCCTTAAAAGAAGCAGTCATTCTTCCAATT
AGATTCCCTGAAATATTTAAAGGTGCTCGTAAGCCATGGAAAGGTATCCTTCTTTATGGA
CCTCCAGGTACTGGTAAAACTTATTTAGCTAAAGCTTGTGCTACAGAAACTGAAGGTACT
TTCTTTTCAGTATCCTCTGCAGATCTTGTCAGCAAATATGTTGGTGAATCAGAAAAATTA
ATTAAGAACTTATTTGCTTTAGCTAGAGAGAAAAAGCCTTCTATTATATTTATTGATGAA
GTAGACAGTTTATGTGGTAATAGAAGTGACGGAGAAAATGATGCTTCAAGAAGAGTAAAA
ACAGAGTTTTTGGTTTAGATGCAAGGTGTTGGTAATGATGATTAAGGTGTTTTGGTACTT
GGAGCAACCAATTTACCATGGGCTCTCGATCCTGCTATTAGAAGAAGATTTGAAAAAAGA
ATCTACATCCCCTTGCCTGACTAACCCGCCAGAAAATTCTTGCTCAAACATAACCTTAAA
AATACTCCAAACACTCTTAAAGAAGAAGATTTTGAAAGATTATCCTAATTAACAGACGGA
TTCTCAGGAGCTGATATGTCTATATTTGTAAGAGATGCAGTACTAGAACCAGTTAGAAGA
TTATAGATTGCAACTAAATTCAAAAAGTTACCAGGAGACAAATACATGCCTGTAGAAGAT
AATGCTTCAGGTCCTGATATTGTTAACCTTAACTATTTAAGCTTAAATCAGTAATAGCTT
GAGCTTCCATAAATATCTGCACAAGATTTTGAAATCGCCATTAAAAAAGCCAAAGGTACT
GTTGGAAAAGATTAGCTCAAAGATTATGAAAAGTGGACTACTGAATTTGGTCAAGATGGT
TGA

>TTHERM_00036960(protein)
MFYGGNNAPSFKLDNTQIRNETQYLIEKGRRSFNEGDTIEEKDKGISTFLQGLKKLELWI
QRETDTLILNTLKTQYQNNYKEVETMLTKLEQIKKNGNQPMAIAQGGGGGNNNSNKDENT
KFKEALQETIVPEKPNIKWDDIAGLVKAKESLKEAVILPIRFPEIFKGARKPWKGILLYG
PPGTGKTYLAKACATETEGTFFSVSSADLVSKYVGESEKLIKNLFALAREKKPSIIFIDE
VDSLCGNRSDGENDASRRVKTEFLVQMQGVGNDDQGVLVLGATNLPWALDPAIRRRFEKR
IYIPLPDQPARKFLLKHNLKNTPNTLKEEDFERLSQLTDGFSGADMSIFVRDAVLEPVRR
LQIATKFKKLPGDKYMPVEDNASGPDIVNLNYLSLNQQQLELPQISAQDFEIAIKKAKGT
VGKDQLKDYEKWTTEFGQDG

>TTHERM_00036960(gene)
ATGTTTTACGGAGGTAATAACGCTCCCTCATTTAAGTTAGATAATACTTAAATTCGTAAT
GAAACATAGTACCTGATTGAGAAAGGTAGAAGATCTTTCAATGAAGGTGATACAATTGAA
GAAAAGGATAAGGGTATTTCAACCTTTTTACAAGGTTTAAAGAAGTTAGAACTATGGATA
TAAAGTAATTTATTTAGATTTACAAATTCGAATCGTTTAAGCTTAAAAAAATAACGCGAA
TCAATTGAAAAATTAACCATTTTTTATTATAATTAACAGGAGAAACTGATACTTTAATTC
TAAATACTTTAAAAACCTAATACCAAAATAACTATAAAGAAGTAGAAACTATGCTTACAA
AATTAGAATAAATTAAAAAAAATGGAAACTAGCCTATGGCAATAGCATAAGGCGGCGGCG
GTGGTAACAAGTAAAATATATTGCAAAATTAGCTAAGTTTAAATATAAAATTTGGTTTTA
AAATAAAATGAAAGCTTATTCTTTAAATTATTTATAGTGGCATTAATTCTTTCATGTATT
ATCACTTAGATTAATTTTATTTTATCTTAAATAGCAATAGTAACAAAGATGAAAACACTA
AATTTAAGGAAGCTTTGTAAGAAACAATTGTGCCCGAAAAACCTAACATAAAATGGGATG
ATATTGCTGGTTTAGTGAAGGCTAAGGAATCCTTAAAAGAAGCAGTCATTCTTCCAATTA
GATTCCCTGAAATATTTAAAGGTGCTCGTAAGCCATGGAAAGGTATCCTTCTTTATGGAC
CTCCAGGTACTGGTAAAACTTATTTAGCTAAAGCTTGTGCTACAGAAACTGAAGGTACTT
TCTTTTCAGTATCCTCTGCAGATCTTGTCAGCAAATATGTTGGTGAATCAGAAAAGTAAT
TTAATTTAATTTAATTTACATTCATTTTCTTTCAGCAAAAAAAACATTATCAATATTTGA
TTAATTAGTGTCTTTAATTATTAAGACAAAATCAACTCTTTAAAAATTTATTAGAATTTC
ATGCTTCACTTTCAAAATATCTTTTGATTGTAATATAAATCAGTCAAAATGAATGAAAAA
ATTCATTCATTCATTCATTCTTTATTTATTATTTTTCTAAAATTTGAAAGTTCATTATTT
GCATGAAAACAAATAAGTTATTATAGATAAAATTAATTTGGTTTATTTCACAATATTTCT
GATCGCATCAATAGGAAATATTGATCAGCATTTGAATATTTATTTATTTAATAAATATCT
CATTTTTCTTTTAAGATTAGAAAATATTTTTACAGTCTATCAAGAAATATAAAAATTTTT
TGAATGCATTTTCATAGGATAAATATATTTTTAAAATAAAAAATAATAGATTAATTAAGA
ACTTATTTGCTTTAGCTAGAGAGAAAAAGCCTTCTATTATATTTATTGATGAAGTAGACA
GTTTATGTGGTAATAGAAGTGACGGAGAAAATGATGCTTCAAGAAGAGTAAAAACAGAGT
TTTTGGTTTAGATGCAAGGTGTTGGTAATGATGATTAAGGTGTTTTGGTACTTGGAGCAA
CCAATTTACCATGGGCTCTCGATCCTGCTATTAGAAGAAGATTTGAAAAAAGAATCTACA
TCCCCTTGCCTGACTAACCCGCCAGAAAATTCTTGCTCAAACATAACCTTAAAAATACTC
CAAACACTCTTAAAGAAGAAGATTTTGAAAGATTATCCTAATTAACAGACGGGTAAAATG
ATTATAAAAGAAATATACAGAATTTTAACATGTTAATTAAAAACAATATATAGATTCTCA
GGAGCTGATATGTCTATATTTGTAAGAGATGCAGTACTAGAACCAGTTAGAAGATTATAG
ATTGCAACTAAATTCAAAAAGTTACCAGGAGACAAATACATGCCTGTAGAAGATAATGCT
TCAGGTCCTGATATTGTTAACCTTAACTATTTAAGCTTAAATCAGTAATAGCTTGAGCTT
CCATAAATATCTGCAGTAAAATTTTTTATTTTTTTATTTTATATTTTTAATAAATAAATT
CTATTTAATAATAAAGCAAGATTTTGAAATCGCCATTAAAAAAGCCAAAGGTACTGTTGG
AAAAGATTAGCTCAAAGATTATGAAAAGTGGACTACTGAATTTGGTCAAGATGGTTGA