Gene Model Identifier
TTHERM_01109940
Standard Name
PMS2
Aliases
PreTt17964 | 239.m00043 | 3802.m00184
Description
PMS2 DNA mismatch repair protein; DNA mismatch repair protein; C-terminal domain containing protein; homolog of human PMS2
Genome Browser (Macronucleus)
Genome Browser (Micronucleus)
Cellular Component Molecular Function Biological Process
No Data fetched for Domains
Tetrahymena Functional Genomics Database:
Signal Peptide Present?: No
TTHERM_01109940
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No Data fetched for StockID
(v.2006 protein sequences)
Source Identifier Score Description
Tetrahymena borealis EI9_20519.1 9.997093137033517e-262 DNA mismatch repair protein do
SGD YNL082W 4.000820122464668e-47 PMS1 ATP-binding protein requi
WormBase WBGene00004064 3.0009061039838537e-46 locus:pms-2 status:Confirmed
DictyBase DDB_G0283981 5.998312950603665e-35 pms1 on chromosome: 4 position
Oxytricha Contig14864.0.g42 1.9991517704232713e-32 DNA mismatch repair protein, C
Stentor Coeruleus SteCoe_12258 2.3195228302435696e-16
Paragraph No Gene Name Paragraph Text 100 PMS2 TTHERM_01109940 is a close homologs to
budding yeast MutL family member, MLH3. TTHERM_01109940p is the first candidate in a BLAST search with Mlh3 as bait, but it is the best hit in a reciprocal BLAST search with Pms1. It is also the best hit with Mlh2 as bait. TTHERM_00127000p is the best hit in a reciprocal BLAST search with Mlh1. Altogether, it is likely that TTHERM_00127000p is the ortholog of Mlh1, whereas TTHERM_01109940p could be any of Pms1, Mlh2 or Mlh3, but an unambiguous assignment is not possible
Ref:23935123 : Lukaszewicz A, Howard-Till RA, Loidl J (2013) Mus81 nuclease and Sgs1 helicase are essential for meiotic recombination in a protist lacking a synaptonemal complex. Nucleic acids research 41(20):9296-309Ref:SUPR000342
>TTHERM_01109940(coding)ATG ATA TGT AGA AAA TTA AAA CTT AAT ACT TAA ATA ATA TCT TTA ATT AAT TTC AGA AAC AAA AAA TTC ATC AAA AAG CAA GTT GAA TTC TCT TAA AAT CAA ACA AAT AAG GAT TAC ATT AGT ATT AAA AAA CAG AGT TTT CAT ATC TAA ATG ATA AAG AAG CTT GAC TAA AGC TCA ATC TTA AAT ATA TGT GTC AAT TAA GTT ATC ATA GAT CTA GCT ACA TGT GTT AAG GAG TTG GTT GAA AAC AGT CTA GAT GCT GGA TCA ACA AAA ATA GAA GTG TAT CTC AAA GAA TAT GGA AAG GAG GGA GTT GAA GTT GTT GAC AAC GGG AGT GGT ATC AGC TCT TAA AAT TTA GAA TAA ATA GCT TAG AAA GGT GCA ACC AGT AAG CTT CGC TAA TTT TAG GAT CTT GAA AGT CTA GAT ACC TTT GGT TTT AGA GGA GAA GCC CTT AAT GCA ATA AGT GTT TTA AGT TAA CTA ACT ATC ACA ACT AAG ACA GAC AGT GAT GAA ATG GCA TAC CGT TAC TAG TTT AAT TAA GAT AAT ACA ATT AAA TCA AAG ACA TTA GTG CCT AGA GAA AGA GGG ACT ACA ATT AGT TTA ACA GAT TTG TTT GGT AAT ATC CCA GTT AGA AAA TAA GAA TTC AAC AAA AAT ATT ATT AGT TAA TAT AAT AAA TTA GTC AAT ATG ATA ACT GAA TAT GCA ATT ATT TCT GTT AAC TGT TAG ATT TGT TTG ATC AAT TAA TCT TCA AAA AAA GGC AGG GAA ATG ATT TTG AAT TCT GGC TCT CCT ATG AAA AAT ATG CTT TAG AAG ACT GCT CAA GTA TTC TCA AAA AAA ATT TCT GAT ATG CTT GTT GAT TTA AAA TTC GAT TTC GGT GAA GAA TGT AGT GTA ATA GAG GGT TAT ATA TTA AAT AGA TAG ACA AGT GGT AGT GTT TAA GAT TCA AAA TCA ATA TAA AAA AAT ATG AGT TAT CTG TTT GTA AAT ACT CGC CCA GTG AAT CCC TTT AAA AAA ATG AAC TCT ATA TTT TCA GAT ATT TAT AAA AAA TAC AAT AGT TCA GCT AGA TAT ATC TAC ATT CTT CAT TTA AAA GTG AAG AAA GAT GCT ATT GAT TTT AAT GTT TCG CCA GAT AAA AGA GAT ATT TTT ATT AAA TAT GAA AAT GAA TTT TAT ACA GCA TTA AGA GAT AAT TTA ACA TAG CTA TTT GAA AAA CTC AAT AGT ATA TAA AAG GTT TTA ATG CCT GTG GTG ATT TCT AGC AAA ATA AAA GAT ACA TCT ATG GAT GAT TCA GAA GAT GAT AGC TAA GAA TCT TCA AAT TAA CAA AAA TAA AAA ACT TTA TCT ACT TAG CAA ACT AAA TAG ACA AAA TTA TTT TAA AAA TTA AAA TAA GAA ATT AAT ATA CAA GAG GAG GAT TTG TCA AAT GAA GAT AGT GAA GCT AAT AAT TAA AAA GAA TTA GAA ATT TTA TCA TTT AAA TCT CCT TCA AAA GGC AAA TAA ATT ACA TAA CTG AAA GAT ACT ATC AAT AAT TAA AGA ATT GGT AGC AGT AAC TCG AAA AGA AAA TAG GAT TTA TTT GAG GAT GTT AAT GAC GAA ATT GAG GAT TTA AGT AAT TTT TCA AGT AAT AGC AAA GCT CAA AGC AAA CAA AAA AAT GAT AAT AGT GAA TAC TTT AAA AGT AGA AAC CAA ACT TTT AAT TCC GAT TAT TTT AGT ATT GCT TAA CAA AGG AAG AAA GCT TAT GAA GAA TAA TTG TAA AAT ACA AGA GAA GAA TTA TAA AAT AGT AAA GAA GAA TAT TAA GAA AAT TAT TAG AAA AAA TAG TAA ACT TCA AGC AAG GAT CAT AAT AAT TAA AAT AAA ACT GAT TCT AAA TAG CTA ATT AAT GAA GAT GAA GAA TAA AAT TAA GAT TTT TCT TAT TTC AAT GAT AAA TTA AAA TTG TAT AAG CAA TCA AAA TAG TAA TCA GAA AAT AAT TCT AAA TAT TAA GTG AAA GAA TAT TCT TTT GAT ATG TTT AAA AAA TCG AAA TAG GAA AAT TCA AGT AAA GGA TAA GAT AAT TAG AAA ATT AAT AAT GAA GAT GAA GAA AAT TGT GAT GAT TAA TGT TGC ACA CAA TCA CAG AAT TAC TCT AAT TCA TAA AAC GAA TAT AAA TCA GAA GAT TCA TCT CTT TAT AAA ATG AAA GAA GAA AAA TAA ACA AAA TAA TTA AAA TAG TCT TTA AAT TAA GAA GAG CTT GTA TAA AAA CAT TTT TAA ATA CAA GAA GAA GCT AGA ATT TTA AAT AAA AAA TAA AAT AAT GAA TTG ATG GAA ATT GAT GAA AAG ATA GAC TAA GAT TAG GGA AGA GCA TTT AAA ATT AAA TCA AAA AAA GAA GAT GAA ATA GAA GAA TTG GCT GAT GAC TTA GAA GAA CAA TTA AAA ACT TGG GAA AGC GAA GAC TTT AAA AAA GAC AAG TTT GTT GAA TTA TAA ATT ATA GGC TAG TTT AAT AAG GCA TTT ATC ATA GCT TAT TGG GTT GAA AAA GAT TAA ATA TTT TTA ATT GAT TAG CAT GCT TCT GAT GAA AAG ACT AAT TAT GAA AGA TTG TTA AAA GAA AAT AAT TTC TAA GGA TAA AAA CTA GTT AAA CCA ATA GAG CTA AGC TTA ACA ATA CAA GAA GCA GAC ATT TTA GAA AAC AAT AGG GAA ATA TTT AAA AAG AAC GGT TTT TAA TTC TAA ATC AAA TAT GAT GAA AGC AAT GGA GAA CCT AAC CTT TAC ATA AAC TAA CTT CCC TCA AGC AAG CAC ATT TAA TTT AAT ATA AAC GAT TTC GAT GAA ATC TTT TAA AAC ATA AAT AAT GAA GAA ACA GAT ATT GAA ACA TTT AGG CCT AAA AAA ATT TAA AGA ATT CTT GCT TCT AAG GCT TGT AGA TCT TCA ATT ATG ATA GGA ACA GCC TTA AAT AAG TCA TCA ATG AAA TAA ATT TTG TTA AAT TTA TCT AAG TTG TAA TCA CCT TGG AAT TGC CCT CAT GGA CGT CCT ACT ATG GTT AAA ACT CCT CCT ATG AAT CAT CTC ATA CAA TAA GTT TAA GTC AAA AAG ACA TAT GAT CTT TGA >TTHERM_01109940(protein)M I C R K L K L N T Q I I S L I N F R N K K F I K K Q V E F S Q N Q T N K D Y I S I K K Q S F H I Q M I K K L D Q S S I L N I C V N Q V I I D L A T C V K E L V E N S L D A G S T K I E V Y L K E Y G K E G V E V V D N G S G I S S Q N L E Q I A Q K G A T S K L R Q F Q D L E S L D T F G F R G E A L N A I S V L S Q L T I T T K T D S D E M A Y R Y Q F N Q D N T I K S K T L V P R E R G T T I S L T D L F G N I P V R K Q E F N K N I I S Q Y N K L V N M I T E Y A I I S V N C Q I C L I N Q S S K K G R E M I L N S G S P M K N M L Q K T A Q V F S K K I S D M L V D L K F D F G E E C S V I E G Y I L N R Q T S G S V Q D S K S I Q K N M S Y L F V N T R P V N P F K K M N S I F S D I Y K K Y N S S A R Y I Y I L H L K V K K D A I D F N V S P D K R D I F I K Y E N E F Y T A L R D N L T Q L F E K L N S I Q K V L M P V V I S S K I K D T S M D D S E D D S Q E S S N Q Q K Q K T L S T Q Q T K Q T K L F Q K L K Q E I N I Q E E D L S N E D S E A N N Q K E L E I L S F K S P S K G K Q I T Q L K D T I N N Q R I G S S N S K R K Q D L F E D V N D E I E D L S N F S S N S K A Q S K Q K N D N S E Y F K S R N Q T F N S D Y F S I A Q Q R K K A Y E E Q L Q N T R E E L Q N S K E E Y Q E N Y Q K K Q Q T S S K D H N N Q N K T D S K Q L I N E D E E Q N Q D F S Y F N D K L K L Y K Q S K Q Q S E N N S K Y Q V K E Y S F D M F K K S K Q E N S S K G Q D N Q K I N N E D E E N C D D Q C C T Q S Q N Y S N S Q N E Y K S E D S S L Y K M K E E K Q T K Q L K Q S L N Q E E L V Q K H F Q I Q E E A R I L N K K Q N N E L M E I D E K I D Q D Q G R A F K I K S K K E D E I E E L A D D L E E Q L K T W E S E D F K K D K F V E L Q I I G Q F N K A F I I A Y W V E K D Q I F L I D Q H A S D E K T N Y E R L L K E N N F Q G Q K L V K P I E L S L T I Q E A D I L E N N R E I F K K N G F Q F Q I K Y D E S N G E P N L Y I N Q L P S S K H I Q F N I N D F D E I F Q N I N N E E T D I E T F R P K K I Q R I L A S K A C R S S I M I G T A L N K S S M K Q I L L N L S K L Q S P W N C P H G R P T M V K T P P M N H L I Q Q V Q V K K T Y D L >TTHERM_01109940(gene)ATG ATA TGT AGA AAA TTA AAA CTT AAT ACT TAA ATA ATA TCT TTA ATT AAT TTC AGA AAC AAA AAA TTC ATC AAA AAG CAA GTT GAA TTC TCT TAA AAT CAA ACA AAT AAG GAT TAC ATT AGT ATT AAA AAA CAG AGT TTT CAT ATC TAA ATG ATA AAG AAG CTT GAC TAA AGC TCA ATC TTA AAT ATA TGT GTC AAT TAA GTT ATC ATA GAT CTA GCT ACA TGT AAT ATT TCT AAA TTT AAT TTG AAG AAT AAT TTA AAT TAC TTT TTT TAC AGG TGT TAA GGA GTT GGT TGA AAA CAG TCT AGA TGC TGG ATC AAC AAA AAT AGA AGT GTA TCT CAA AGA ATA TGG AAA GGA GGG AGT TGA AGT TGT TGA CAA CGG GAG TGG TAT CAG CTC TTA AAA TTT AGA ATA AAT AGC TTA GAA AGG TGC AAC CAG TAA GCT TCG CTA ATT TTA GGA TCT TGA AAG TCT AGA TAC CTT TGG TTT TAG AGG AGA AGC CCT TAA TGC AAT AAG TGT TTT AAG TTA ACT AAC TAT CAC AAC TAA GAC AGA CAG TGA TGA AAT GGC ATA CCG TTA CTA GTT TAA TTA AGA TAA TAC AAT TAA ATC AAA GAG TAA TTT TCA ATT TAA ACA CAT AAA TTA AAT TAT CAT TCA TAA AAT ATA TTT TAT TGA AAT TAT TTT AAT TTA ACA AGA TTT TAT TAT TTA AAT TCT TTA AAA TTT TTT TTA TTA TGA TGA ATA GCA TTA GTG CCT AGA GAA AGA GGG ACT ACA ATT AGT TTA ACA GAT TTG TTT GGT AAT ATC CCA GTT AGA AAA TAA GAA TTC AAC AAA AAT ATT ATT AGT TAA TAT AAT AAA TTA GTC AAT ATG ATA ACT GAA TAT GCA ATT ATT TCT GTT AAC TGT TAG ATT TGT TTG ATC AAT TAA TCT TCA AAA AAA GGC AGG GAA ATG ATT TTG AAT TCT GGC TCT CCT ATG AAA AAT ATG CTT TAG AAG ACT GCT CAA GTA TTC TCA AAA AAA ATT TCT GAT ATG CTT GTT GAT TTA AAA TTC GAT TTC GGT GAA GAA TGT AGT GTA ATA GAG GGT TAT ATA TTA AAT AGA TAG ACA AGT GGT AGT GTT TAA GAT TCA AAA TCA ATA TAA AAA AAT ATG AGT TAT CTG TTT GTA AAT ACT CGC CCA GTG AAT CCC TTT AAA AAA ATG AAC TCT ATA TTT TCA GAT ATT TAT AAA AAA TAC AAT AGT TCA GCT AGA TAT ATC TAC ATT CTT CAT TTA AAA GTG AAG AAA GAT GCT ATT GAT TTT AAT GTT TCG CCA GAT AAA AGA GAT ATT TTT ATT AAA TAT GAA AAT GAA TTT TAT ACA GCA TTA AGA GAT AAT TTA ACA TAG CTA TTT GAA AAA CTC AAT AGT ATA TAA AAG GTT TTA ATG CCT GTG GTG ATT TCT AGC AAA ATA AAA GAT ACA TCT ATG GAT GAT TCA GAA GAT GAT AGC TAA GAA TCT TCA AAT TAA CAA AAA TAA AAA ACT TTA TCT ACT TAG CAA ACT AAA TAG ACA AAA TTA TTT TAA AAA TTA AAA TAA GAA ATT AAT ATA CAA GAG GAG GAT TTG TCA AAT GAA GAT AGT GAA GCT AAT AAT TAA AAA GAA TTA GAA ATT TTA TCA TTT AAA TCT CCT TCA AAA GGC AAA TAA ATT ACA TAA CTG AAA GAT ACT ATC AAT AAT TAA AGA ATT GGT AGC AGT AAC TCG AAA AGA AAA TAG GAT TTA TTT GAG GAT GTT AAT GAC GAA ATT GAG GAT TTA AGT AAT TTT TCA AGT AAT AGC AAA GCT CAA AGC AAA CAA AAA AAT GAT AAT AGT GAA TAC TTT AAA AGT AGA AAC CAA ACT TTT AAT TCC GAT TAT TTT AGT ATT GCT TAA CAA AGG AAG AAA GCT TAT GAA GAA TAA TTG TAA AAT ACA AGA GAA GAA TTA TAA AAT AGT AAA GAA GAA TAT TAA GAA AAT TAT TAG AAA AAA TAG TAA ACT TCA AGC AAG GAT CAT AAT AAT TAA AAT AAA ACT GAT TCT AAA TAG CTA ATT AAT GAA GAT GAA GAA TAA AAT TAA GAT TTT TCT TAT TTC AAT GAT AAA TTA AAA TTG TAT AAG CAA TCA AAA TAG TAA TCA GAA AAT AAT TCT AAA TAT TAA GTG AAA GAA TAT TCT TTT GAT ATG TTT AAA AAA TCG AAA TAG GAA AAT TCA AGT AAA GGA TAA GAT AAT TAG AAA ATT AAT AAT GAA GAT GAA GAA AAT TGT GAT GAT TAA TGT TGC ACA CAA TCA CAG AAT TAC TCT AAT TCA TAA AAC GAA TAT AAA TCA GAA GAT TCA TCT CTT TAT AAA ATG AAA GAA GAA AAA TAA ACA AAA TAA TTA AAA TAG TCT TTA AAT TAA GAA GAG CTT GTA TAA AAA CAT TTT TAA ATA CAA GAA GAA GCT AGA ATT TTA AAT AAA AAA TAA AAT AAT GAA TTG ATG GAA ATT GAT GAA AAG ATA GAC TAA GAT TAG GGA AGA GCA TTT AAA ATT AAA TCA AAA AAA GAA GAT GAA ATA GAA GAA TTG GCT GAT GAC TTA GAA GAA CAA TTA AAA ACT TGG GAA AGC GAA GAC TTT AAA AAA GAC AAG TTT GTT GAA TTA TAA ATT ATA GGC TAG TTT AAT AAG GCA TTT ATC ATA GCT TAT TGG GTT GAA AAA GAT TAA ATA TTT TTA ATT GAT TAG CAT GCT TCT GAT GAA AAG ACT AAT TAT GAA AGA TTG TTA AAA GAA AAT AAT TTC TAA GGA TAA AAA CTA GTT AAA CCA ATA GAG CTA AGC TTA ACA ATA CAA GAA GCA GAC ATT TTA GAA AAC AAT AGG GAA ATA TTT AAA AAG AAC GGT TTT TAA TTC TAA ATC AAA TAT GAT GAA AGC AAT GGA GAA CCT AAC CTT TAC ATA AAC TAA CTT CCC TCA AGC AAG CAC ATT TAA TTT AAT ATA AAC GAT TTC GAT GAA ATC TTT TAA AAC ATA AAT AAT GAA GAA ACA GAT ATT GAA ACA TTT AGG CCT AAA AAA ATT TAA AGA ATT CTT GCT TCT AAG GCT TGT AGA TCT TCA ATT ATG ATA GGA ACA GCC TTA AAT AAG TCA TCA ATG AAA TAA ATT TTG TTA AAT TTA TCT AAG TTG TAA TCA CCT TGG AAT TGC CCT CAT GGA CGT CCT ACT ATG GTT AAA ACT CCT CCT ATG AAT CAT CTC ATA CAA TAA GTT TAA GTC AAA AAG ACA TAT GAT CTT TGA
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