Identifiers and Description

Gene Model Identifier

TTHERM_00049200

Standard Name

None

Aliases

PreTt11299 | 3.m01707 | 3824.m03058

Description

WD40 domain protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.7%

TetraMine Data

TTHERM_00049200

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_01638.1	9.997093137033517e-262	hypothetical protein (347 aa)
Oxytricha	Contig3164.0.g43	5.999266750653237e-78	WD domain, G-beta repeat
Stentor Coeruleus	SteCoe_33027	3.6251409191435593e-34
DictyBase	DDB_G0288453	0.0000000000000700196834671948	DDB_G0288453 on chromosome: 5 position 1521809 to 1525011
WormBase	WBGene00011051	0.000000000010004361180063202	locus:pfs-2 status:Partially _confirmed UniProt:U4PCM1 protein_id:CDH93484.1
SGD	YGL137W	0.000000009996807949091551	SEC27 Essential beta-coat prot ein of the COPI coatomer, invo lved in ER-to-Golgi and Golgi- to-ER transport; contains WD40 domains that mediate cargo se lective interactions; 45% sequ ence identity to mammalian bet a-COP

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00049200(coding)
ATGGATACATAAAGCTCTGTTGAGTATGATTATTTTAGACATGACGTTGTAGATGTTAAA
GGAATGGGTAAAAAGATAGTCAAAAAAAACATTTTCAATACAGAATCTCCTATTATGAAT
TTAAGATTTGATCCCGAAGACACAATGATTGCTGCTGTTTGTGGAGATGGATCTCTAAAA
ATATTTCACTTGCATTCAGATTAGCTTAAGGTAAAAGTAAAAACAGGAAAACCAAATATG
AATGTGCCAGCTACTTGTTTAAGATGGAGACCAACAGCTTTTTCGGCCTCTACTAAGAAT
GTAATAGTGACAGGAGGAGCTGATGGGTAGTTAGTACACTGGCATGTAACCACAGGAAAG
GAACTCAATAGGATAGAAGAAAAAGGAAATCAAATTAACTCTATAGATTACAACAAAGAT
GGAAGTCGCTTTATAACTTCTGGAAGTGATAATAAAATTAGATTATATGATGAAAATGAA
AAATCTTTAGTATCAGAGTACAAAGGTTCAGAATGGCAAGATCCAGGACACAATAACAGA
ATTTTTTCATTAAAATTTTTACCAGATGATCCTAATTTATTCATAAGTGGAGGTTGGGAT
ACGAATGTACATATATGGGATATAAGACAAGGGAAATCAGTAGGAGGATTTATAGGACCC
AAAATAGGAGGTGATTCATTAGATTATCAAAATGGACATATTTTAACAGGTGCAAATAGA
TCTAGAGATTAATTACAAATATGGGATTTTAAGTAAAGAACTTTAATTAGAACAGTTGAT
TGGAATTATGGTAAAAAAGAAGACACTGGAGCTTTTGTTTATGGTTGTCAATTCAGCAAA
TGCAATTCAGATAGCATTATTGCTGGTTCATTTGGTTTAAATGAAGTTAGGCTCTTTGAC
TAAAATAAAGATTATCAACCTTATGGATACGTAACAGGATTTAAAAAGGGAATATATTCT
GTTGATTTTGGTAATTTCTCTAACAAATTCGCATTTGGTGGTGAAGATGGAGGAATATTT
GTAATGTCTGTTACAGCAGCTTGA

>TTHERM_00049200(protein)
MDTQSSVEYDYFRHDVVDVKGMGKKIVKKNIFNTESPIMNLRFDPEDTMIAAVCGDGSLK
IFHLHSDQLKVKVKTGKPNMNVPATCLRWRPTAFSASTKNVIVTGGADGQLVHWHVTTGK
ELNRIEEKGNQINSIDYNKDGSRFITSGSDNKIRLYDENEKSLVSEYKGSEWQDPGHNNR
IFSLKFLPDDPNLFISGGWDTNVHIWDIRQGKSVGGFIGPKIGGDSLDYQNGHILTGANR
SRDQLQIWDFKQRTLIRTVDWNYGKKEDTGAFVYGCQFSKCNSDSIIAGSFGLNEVRLFD
QNKDYQPYGYVTGFKKGIYSVDFGNFSNKFAFGGEDGGIFVMSVTAA

>TTHERM_00049200(gene)
ATGGATACATAAAGCTCTGTTGAGTATGATTATTTTAGACATGAGTAATTATTTTTATTG
ATATTGTAGGATTTGATAAAAATTTATTCTTCGACCTTGTTTTTATCTGTTCTATTCTTT
AAAAAATTTCAAAATTATTTTCTTAAATTTATCATTTTAATTAGCGTTGTAGATGTTAAA
GGAATGGGTAAAAAGATAGTCAAAAAAAACATTTTCAATACAGAATCTCCTATTATGAAT
TTAAGATTTGATCCCGAAGACACAATGATTGCTGCTGGTAATTTTGCAAATCTTACATAT
AATTATTATCAATTTAGTTTTATTATTGCGTTTTATAAATTATTGTCAAGTTTTTTAATG
AAAAAATATATTTTTGTTAAATAAAATAGTTTGTGGAGATGGATCTCTAAAAATATTTCA
CTTGCATTCAGGTAAATAATTTTAGAGTCTTTTCATCATTTTATTTTTCACAATTTGTTA
AAGATTAGCTTAAGGTAAAAGTAAAAACAGGAAAACCAAATATGAATGTGCCAGCTACTT
GTTTAAGGTAGAATAAAATTTTATTAAATAAAATCAAAGTTTATTTTTATATAAAATATA
GATGGAGACCAACAGCTTTTTCGGCCTCTACTAAGAATGTAATAGTGACAGGAGGAGCTG
ATGGGTAGTTAGTACACTGGCATGTAACCACAGGTATCTATCACTTATTTTTTTTATTTA
TTTTTAATGTAACCATAAAAAATATATAAATAAATTTAGGAAAGGAACTCAATAGGATAG
AAGAAAAAGGAAATCAAATTAACTCTATAGATTACAACAAAGATGGAAGTCGCTTTATAA
CTTCTGGAAGTGATAATAAAGTAAAATTAAATTAAAAAATTATTATTTCAATTTATTATC
AAATTAGATTAGATTATATGATGAAAATGAAAAATCTTTAGTATCAGAGTACAAAGGTTC
AGAATGGCAAGATCCAGGACACAATAACAGAATTTTTTCATTAAAATTTTTACCAGATGA
TCCTAATTTATTCATAAGTGGAGGTTGGGATACGAATGTACATATATGGGATATAAGACA
AGGGAAATCAGTAGGAGGATTTATAGGACCCAAAATAGGAGGTAGATATTTAAAATAAAT
TAAAAGTTAACAATTCTGCAATAAAAATATAGGTGATTCATTAGATTATCAAAATGGACA
TATTTTAACAGGTGCAAATAGATCTAGAGATTAATTACAAATATGGGATTTTAAGTAAAG
AACTTTAATTAGAACAGTTGATTGGAATTATGGTAAAAAAGAAGACACTGGAGCTTTTGT
TTATGGTTGTCAATTCAGCAAATGCAATTCAGATAGCATTATTGCTGGTTCATTTGGTTT
AAATGAAGTTAGGCTCTTTGACTAAAATAAAGATTATCAACCTTATGGATACGTAACAGG
ATTTAAAAAGGGAATATATTCTGTTGATTTTGGTAATTTCTCTAACAAATTCGCATTTGG
TGGTGAAGATGGAGGAATATTTGTAATGTCTGTTACAGCAGCTTGA