Identifiers and Description

Gene Model Identifier

TTHERM_00395710

Standard Name

THD5 (Tetrahymena histone deacetylase 5)

Aliases

PreTt23595 | 42.m00329 | 3813.m01547

Description

Histone deacetylase family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 19.5%

TetraMine Data

TTHERM_00395710

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_11546.1	9.997093137033517e-262	histone deacetylase (682 aa)
Oxytricha	Contig549.1.g14	1.9999366565375063e-113	Histone deacetylase domain
WormBase	WBGene00007953	3.000074895537278e-78	locus:hda-11 status:Partiall y_confirmed UniProt:Q18477 protein_id:CAA94910.3
Stentor Coeruleus	SteCoe_25228	6.813556821545298e-46
SGD	YNL021W	2.9992476920535046e-16	HDA1 Putative catalytic subuni t of a class II histone deacet ylase complex that also contai ns Hda2p and Hda3p; Hda1p inte racts with the Hda2p-Hda3p sub complex to form an active tetr amer; deletion increases histo ne H2B, H3 and H4 acetylation
DictyBase	DDB_G0268024	9.997764199084386e-16	hdaA on chromosome: 1 position 1320084 to 1322172

General Information

No Data fetched for General Information

Associated Literature

1. Ref:18178773: Smith JJ, Torigoe SE, Maxson J, Fish LC, Wiley EA (2008) A class II histone deacetylase acts on newly synthesized histones in Tetrahymena. Eukaryotic cell 7(3):471-82
2. Ref:SUPR000095
3. Ref:SUPR000086

Sequences

>TTHERM_00395710(coding)
ATGTACACACTAATTTGCGCTGTTTAAGATTTAGCTTTATTTGGAATTTTTATTACAGGG
TTGGTCTTATTAGAATGGCAAATAATTGTATTTCCCATTTTAATTTACATCCTCATCCCA
TTTTTAAACGAGTTGGTCTACAATTGCTTTGCTAAATTATTATTCACAATAGAAAAGGAG
AAGAAAAGGATGGAGTAAAGGTATTCTTAATCAGAATTAGAAAATAAATATATTGAAAAT
TTACCTATTTTATACCATCCCTCATACAACATTACAGCTTGTGGGATTGAAAAACTTCAC
CCTTTTGATTCTGTAAAGTATGGAAGAGTTTTTAATATACTCAAAGAAAAAGGATTTCTA
TAAGAATAAGGTTTCTATAAGCCAAAAGAAAAAGTAGGAAGAGGCTTAATGCTGCATTTA
GGAATGTCTCCTTTGTATTTACTTTATCTTAATTATGCTGCTTATGTATCCAAATGTATA
GAAATTCCTCTATTCTTCCTACCTGCCAGCTTCTTAAGATGGAAAGTATTAGATCCTATG
ATGTTTTCTACTCAGGGTTCAATAGATGCCGCCGTTTTATCTTTAAAAAGAGGCTGGTCT
ATAAATTTAAGTGGAGGCTATCACCACGCTTGCAGGTAATCTGGAGGCGGATTTTGCATA
TATCCAGACATATGTTTCGCTATAGAATATTTAAGAAAATGTTTTGGCATAAAAAGATGC
ATGATTGTAGATTTAGATGCTCATCAAGGAAATGGACATGAAAGAGATTTTATAGATGAT
AAAGAAAATACATTTATATTAGATTTTTACAATCACAGTATTTATCCAGCAGATACCTTT
GCAGCCAAAGGTATAAGTCTTTCTAAAAACGTAGATTTTGATACATCTGATTCAGAATAT
ATCTCTATGTTGAGAAAGACACTTTAAAAAATTCTTGATTAATTCAAACCTGAGTTTTTA
CTATATAATGCAGGAACTGATTGTCTTGAAGGTGATCGTTTGGGTTAAATGAATCTCTCT
CAAAATTGCATAATTCAGAGAGATTAAGTTGTATTTGAAGAATGCTTAAATAGAGATATA
CCCTTAACTATGGTGCTTTCAGGAGGGTATTAGTAAATAAATGCACCTGTTATAGCTGAC
TCTATTTTAAATCTTGATTAAAATTTAAAAATAAAAAATTACAATAGAAAAAAATTATAA
AACCCATGA

>TTHERM_00395710(protein)
MYTLICAVQDLALFGIFITGLVLLEWQIIVFPILIYILIPFLNELVYNCFAKLLFTIEKE
KKRMEQRYSQSELENKYIENLPILYHPSYNITACGIEKLHPFDSVKYGRVFNILKEKGFL
QEQGFYKPKEKVGRGLMLHLGMSPLYLLYLNYAAYVSKCIEIPLFFLPASFLRWKVLDPM
MFSTQGSIDAAVLSLKRGWSINLSGGYHHACRQSGGGFCIYPDICFAIEYLRKCFGIKRC
MIVDLDAHQGNGHERDFIDDKENTFILDFYNHSIYPADTFAAKGISLSKNVDFDTSDSEY
ISMLRKTLQKILDQFKPEFLLYNAGTDCLEGDRLGQMNLSQNCIIQRDQVVFEECLNRDI
PLTMVLSGGYQQINAPVIADSILNLDQNLKIKNYNRKKLQNP

>TTHERM_00395710(gene)
AAATTATTGAGCCAACCAAAAAATAAATAAGTTATAACAAAAGAGTCATAAATTAATTTA
TAACAAAAATTATGTACACACTAATTTGCGCTGTTTAAGATTTAGCTTTATTTGGAATTT
TTATTACAGGGTTGGTCTTATTAGAATGGCAAATAATTGTATTTCCCATTTTAATTTACA
TCCTCATCCCATTTTTAAACGAGTTGGTCTACAATTGCTTTGCTAAATTATTATTCACAA
TAGAAAAGGAGAAGAAAAGGATGGAGTAAAGGTATTCTTAATCAGAATTAGAAAATAAAT
ATATTGAAAATTTACCTATTTTATACCATCCCTCATACAACATTACAGCTTGTGGGATTG
AAAAACTTCACCCTTTTGATTCTGTAAAGTATGGAAGAGTTTTTAATATACTCAAAGAAA
AAGGATTTCTATAAGAATAAGGTTTCTATAAGCCAAAAGAAAAAGTAGGAAGAGGCTTAA
TGCTGCATTTAGGAATGTCTCCTTTGTATTTACTTTATCTTAATTATGCTGCTTATGTAT
CCAAATGTATAGAAATTCCTCTATTCTTCCTACCTGCCAGCTTCTTAAGATGGAAAGTAT
TAGATCCTATGATGTTTTCTACTCAGGGTTCAATAGATGCCGCCGTTTTATCTTTAAAAA
GAGGCTGGTCTATAAATTTAAGTGGAGGCTATCACCACGCTTGCAGGTAAACTAAAAGTT
TATAAAAAATATTAACATACTATTACAAATTTTTGAATAAAATAACAAAATTACATCTAA
TTATTATGTTTTTTAACTAAAAATAAATTTCATTTCTGCATCTTTTAACAATTTAAACAT
CTAAGATACTCTGAAAAGCAGAAAGTTGCCCTAGAAAATTAAAAAATTTACTCAAAATTT
TAAATAAATAATTTCAGTAGTGAATTAAGAAACCAATAAAAGCCTAATCAGTATTTATCA
ATAAAATTATAAACATCTAATAAAATCTAACATAGCATCAATAGGAATAAAAAGTAACTA
GTATAGAAATGATTAAATTATAGAGTAAATTTTAAAAAAATAATATAGAAGTATAAAACA
GGATTTAATTATTAATACAACATTCACCCAATTTATCATCTCCAAAAAATAGTTATTTAT
TTATTTAATTTTGATTAGAATAAGTTTTGAAATTCTTTTTTCTTTTATTTAATTTAAATT
CGATGTTTATCGTTTCATTTTATTAAAATTTAGGTAATCTGGAGGCGGATTTTGCATATA
TCCAGACATATGTTTCGCTATAGAATATTTAAGAAAATGTTTTGGCATAAAAAGATGCAT
GATTGTAGATTTAGATGCTCATCAAGGAAATGGACATGAAAGAGATTTTATAGATGATAA
AGAAAATACATTTATATTAGATTTTTACAATCACAGTATTTATCCAGCAGATACCTTTGC
AGCCAAAGGTATAAGTCTTTCTAAAAACGTAGATTTTGATACATCTGATTCAGAATATAT
CTCTATGTTGAGAAAGACACTTTAAAAAATTCTTGATTAATTCAAACCTGAGTTTTTACT
ATATAATGCAGGAACTGATTGTCTTGAAGGTGATCGTTTGGGTTAAATGAATCTCTCTCA
AAATTGCATAATTCAGAGAGATTAAGTTGTATTTGAAGAATGCTTAAATAGAGATATACC
CTTAACTATGGTGCTTTCAGGAGGGTATTAGTAAATAAATGCACCTGTTATAGCTGACTC
TATTTTAAATCTTGATTAAAATTTAAAAATAAAAAATTACAATAGAAAAAAATTATAAAA
CCCATGAAAAAAAGTTATTGATAGATTTATTTTTAAATAAAAAAAATCAGTAGACTGATA
AATGCTTAATCATCAATCTTTCACAAAATTTTAAAACTTTTTAAAAAATTATTATAATAA
TAATCTCAAATTCACAAATTGTATATCAAAAACAAAAAAAAATAACATATTCAAAAATGA
TATGACTTAACTTTTTATTTTTCAATTTATATATATATAACCTATTACTTTATTAAACTA
AGTATTTACTAGCTATTCATTTTCTAGTCTTTTTAACAATAACTATTAGC