Identifiers and Description

Gene Model Identifier

TTHERM_00152050

Standard Name

TFB2 (RNA polymerase II transcription factor B subunit 2)

Aliases

PreTt20863 | 12.m00537 | 3700.m00256

Description

general transcription factor IIH subunit 2

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• zinc ion binding (IEA) | GO:0008270

Biological Process

• DNA repair (IEA) | GO:0006281
• regulation of transcription (IEA) | GO:0045449

Domains

• ( PF04056 ) Ssl1-like
• ( PF07649 ) C1-like domain
• ( PF07975 ) TFIIH C1-like domain
• ( TIGR00622 ) transcription factor ssl1
• ( PF00097 ) zinc finger, C3HC4 type (RING
• ( TIGR01492 ) Plasmodium falciparum CPW-WPC domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.5%

TetraMine Data

TTHERM_00152050

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_05153.1	9.997093137033517e-262	transcription factor ssl1 fami ly protein (375 aa)
DictyBase	DDB_G0272362	4.998233068678632e-48	gtf2h2 on chromosome: 2 positi on 1296713 to 1298183
Oxytricha	Contig14857.0.g41	9.997441244797434e-45	Ssl1-like
WormBase	WBGene00011814	5.000680012816624e-42	General transcription factor I IH subunit 2 status:Confirme d UniProt:P34567 protein_i d:CAA83139.3
SGD	YLR005W	1.999683289470905e-41	SSL1 Component of the core for m of RNA polymerase transcript ion factor TFIIH, which has bo th protein kinase and DNA-depe ndent ATPase/helicase activiti es and is essential for transc ription and nucleotide excisio n repair; interacts with Tfb4p

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00152050(coding)
ATGGATATTGAAGAAGCAGATAGAAGATCAATTATTGATTTCGTAGAATAAAAACTAAAT
ATTAAAGAAGAAAATCCTTTAATACAAACAAAGAAAATCATCGATAAAGGATATACCTCT
ACAACAAAAAAGAGTCTCCTAAGATTTGTATATATTATAGTTGATACAACCTAATCTTCT
ACAAGAGTAGATTTCAAGCCTTCGAGAATAGGACTAACGTAAATCTACTTAAAGAACTTC
ATAAAAAACTTTTTTGATTCTAATCCTTTGAGTGTATTATCTATTGGTAAAACATAAAAT
GGCTAGTGTATAACTCTTTAAGAATTTACATCTAGTATATCTCTTTTAGATAAAACAATC
GAAAAACTTGTAGTTGATGAAAAGGAGGATTTTTCTCTTTTTGAATGTTTAAATGAAACT
TTTAATATTTTTGCTGAAGCACCTCCATATGCTTTCAGAGAAGTAGTTCTAATTTAGTCA
ACACCTTCAACAAAAGATAAAGGTGATATAAATGAATAAATAAATAAAGCCAAATAATGC
AAAATAACTTTTAATATTATATCACTTAATGCAAAAACATTCATATTTTAGAAATTGACA
AAAGAGACATAAGGTAAATATGACACAGCTTTACATGAAAAAGATTATGAAAATTTACTT
AACAGCTATTGTGAACCTCCATAATAAATATTAAATAAAACTGAAAAAACTCTTATACAA
GTTGGTTTCCCTAATAAAAAATATTCTAAAATTTCTGTATTATGTGCTTGCCATATGGAG
TTAAAAACTAACTTTTACATTTGCCCTTAATGCAAAAGTAAAAACTGTGAAGTTCCTTCA
AAATGTTCAGGATGCCAATTAAATTTAATTCTTCCTTTGCATATCACAAAGAGCTATCAT
TTTAGTTAAAATTTAAAAGAATTCGAATTGTTAGGACAAGAAAAATCTAATAATAGTATG
GAAACCGAGTAAGATAAAACATAAAATATCCTTTGTAATGGATGCTCTGAAGATATTAAA
GAAGATTACTTCTCAAAATGTTAAAATTGTAAATCAATATTCTGCTTGGAATGTGATATT
TTAATACACAAGCAAAAGCTAAATTGTCCTAAATGTTGA

>TTHERM_00152050(protein)
MDIEEADRRSIIDFVEQKLNIKEENPLIQTKKIIDKGYTSTTKKSLLRFVYIIVDTTQSS
TRVDFKPSRIGLTQIYLKNFIKNFFDSNPLSVLSIGKTQNGQCITLQEFTSSISLLDKTI
EKLVVDEKEDFSLFECLNETFNIFAEAPPYAFREVVLIQSTPSTKDKGDINEQINKAKQC
KITFNIISLNAKTFIFQKLTKETQGKYDTALHEKDYENLLNSYCEPPQQILNKTEKTLIQ
VGFPNKKYSKISVLCACHMELKTNFYICPQCKSKNCEVPSKCSGCQLNLILPLHITKSYH
FSQNLKEFELLGQEKSNNSMETEQDKTQNILCNGCSEDIKEDYFSKCQNCKSIFCLECDI
LIHKQKLNCPKC

>TTHERM_00152050(gene)
ATGGATATTGAAGAAGCAGATAGAAGATCAATTATTGATTTCGTAGAATAAAAACTAAAT
ATTAAAGAAGAAAATCCTTTAATACAAACAAAGAAAATCATCGATAAAGGATATACCTCT
ACAACAAAAAAGAGTCTCCTAAGATTTGTATATATTATAGTTGATACAACCTAATCTTCT
ACAAGAGTAGATTTCAAGCCTTCGAGAATAGGACTAACGTAAATCTACTTAAAGGTAATA
ATATTGCATTCAAAATTTTTAATTTATAAAAAATTAATATTATTTTTAATATTAATTAGA
ACTTCATAAAAAACTTTTTTGATTCTAATCCTTTGAGTGTATTATCTATTGGTAAAACAT
AAAATGGCTAGTGTATAACTCTTTAAGAATTTACATCTAGTATATCTCTTTTAGATAAAA
CAATCGAAAAACTTGTAGTTGATGAAAAGGAGGATTTTTCTCTTTTTGAATGTTTAAATG
TAAATTTATAAATTTCTTTTGAATGTTTGTGAATAAAATATTTTTTAAGACCAAATCTTT
ATCTAAAAAACATTTAAAATAAAGGAAACTTTTAATATTTTTGCTGAAGCACCTCCATAT
GCTTTCAGAGAAGTAGTTCTAATTTAGTCAACACCTTCAACAAAAGATAAAGGTGATATA
AATGAATAAATAAATAAAGCCAAATAATGCAAAATAACTTTTAATATTATATCACTTAAT
GCAAAAACATTCATATTTTAGGTAAATAGATTTTAAATTTATACATTGCACAAACCATGC
AAAACTCTATATTTAATAGAAATTGACAAAAGAGACATAAGGTAAATATGACACAGCTTT
ACATGAAAAAGATTATGAAAATTTACTTAACAGCTATTGTGAACCTCCATAATAAATATT
AAATAAAACTGAAAAAACTCTTATACAAGTTGGTTTCCCTAATAAAAAATATTCTAAAAT
TTCTGTATTATGTGCTTGCCATATGGAGTTAAAAACTAACTTTTACATTTGCCCTTAATG
CAAAAGTAAAAACTGTGAAGTTCCTTCAAAATGTTCAGTAACTAATTTTTTAGAATTTTT
AAAAATTTACAAGTTTTTATTAAATTTACTAATAAGGGATGCCAATTAAATTTAATTCTT
CCTTTGCATATCACAAAGAGCTATCATTTTAGTTAAAATTTAAAAGAATTCGAATTGTTA
GGACAAGAAAAATCTAATAATAGTATGGAAACCGAGTAAGATAAAACATAAAATATCCTT
TGTAATGGATGCTCTGAAGATATTAAAGAAGATTACTTCTCAAAATGTTAAAATTGTAAA
TCAATATTCTGCTTGTAAATTAATTGTTTTATTCACACAAGCAACTTTTTAACAATTTTT
TAACTAAATTTTATAGGGAATGTGATATTTTAATACACAAGCAAAAGCTAAATTGTCCTA
AATGTTGA