Identifiers and Description
Gene Model Identifier
TTHERM_00304150Standard Name
SNF5Aliases
PreTt21221 | 29.m00182 | 3696.m00005Description
SNF5/SMARCB 1/INI1 family protein; Conserved protein. Member of the SWI/SNF complex.Genome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Cellular Component
- nuclear chromosome (IEA) | GO:0000228
Biological Process
- chromatin remodeling (IEA) | GO:0006338
Domains
- ( PF04855 ) SNF5 / SMARCB1 / INI1
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.4%
TetraMine Data
TTHERM_00304150
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_11574.1 9.997093137033517e-262 hypothetical protein (354 aa)
Oxytricha Contig1260.1.g26 5.997739233660418e-28 SNF5 / SMARCB1 / INI1
WormBase WBGene00011111 2.9990241513684e-21 locus:snfc-5 status:Confirme
d UniProt:Q21831 protein_i
d:CAA83625.1
SGD YLR321C 9.004296568159186e-20 SFH1 Component of the RSC chro
matin remodeling complex; esse
ntial gene required for cell c
ycle progression and maintenan
ce of proper ploidy; phosphory
lated in the G1 phase of the c
ell cycle; Snf5p paralog
Stentor Coeruleus SteCoe_10796 8.533047625744066e-17 DictyBase DDB_G0279373 7.003160085026828e-16 snf5 on chromosome: 3 position
2004876 to 2006425
General Information
No Data fetched for General Information
Associated Literature
- Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10
Sequences
>TTHERM_00304150(coding)
ATGTCTTTAACTGTAACTTATAATAGTGGAATGGTTAAAAAGCCATTATACTAAAGAGTA
CACGAAGTACTTAATCGCTTAGGTTTATTTTATCAAGACATTTGTGTGGAGGCAAATATA
AATGAAGAAAGTTTGATTTAGTGGGTAAACTAAGACCCTGAATATGATTATGCCGAATTA
GAGCTTTCTCTTGAGAAATGGATAGATTCAAAGTACTAGCGTTCATAGAACAATGATGAA
AAATAATATTATTAAATTCGTTCTCAATATTTAAAAAGATTAGATATAAATTAATAGCTA
GCAAACTAATGGCTAGAGGCACCAAATATTGATAAAATTCCTTAAAATGACCAACCAAAT
GAGTATCTAATACCTATAAGCATTGATATTGAATTGGATGGATAGACTTTTAAAGAAAAT
ATAATTTGGAATTATTATGAACCATATTTTACTCCAGAAAACTTTGCTCATCACTTAGCA
AAAGAAAACAGATTAAGTCCTAATATAGAATAAGAAGTAGTTAATGTAATCCGCAGAGCT
CTTTAAAACTATCGCTTCTACGATCCTAAGGAAAGAGAGCTCATCCGTACTATTGAATTA
AATATATTGATAGAAAATGTATAGCTAAAAGATAGATTTGAGTGGGATATTAATGATTTC
ACAAATTCTCCAGAATAATTTGCTTTTAATATGTGCAATGAATTAGGTCTTAGTGGAGAA
TTTGCATAGAGAATAGCGTATTAAATAAGAGAATAGATTCTCTCCTTCTAAAAATAAATT
ATGGAAAGACGTATAAACTAAACTGCATCTAATTTCAAGAAGTCTACTCGTTCTTTAATT
GAATCCTCTTAAAATTTCACAAACTTTGACCCCAAAATTCACATCTAAGGAAATACAGTA
ATTACAGAAGAAAATTATTTACGTCCTGTACTTTAAGATAATGATTATGATAGTTTTCAA
TGGGAGCCAAAAATTTCAATCTTATAACCAGATGATATTAGAAAGGTATAGAAAGAAGAA
TAGAGAAAGCAACGTCTTATGCGTAGAACTCGTTGA>TTHERM_00304150(protein)
MSLTVTYNSGMVKKPLYQRVHEVLNRLGLFYQDICVEANINEESLIQWVNQDPEYDYAEL
ELSLEKWIDSKYQRSQNNDEKQYYQIRSQYLKRLDINQQLANQWLEAPNIDKIPQNDQPN
EYLIPISIDIELDGQTFKENIIWNYYEPYFTPENFAHHLAKENRLSPNIEQEVVNVIRRA
LQNYRFYDPKERELIRTIELNILIENVQLKDRFEWDINDFTNSPEQFAFNMCNELGLSGE
FAQRIAYQIREQILSFQKQIMERRINQTASNFKKSTRSLIESSQNFTNFDPKIHIQGNTV
ITEENYLRPVLQDNDYDSFQWEPKISILQPDDIRKVQKEEQRKQRLMRRTR>TTHERM_00304150(gene)
ATGTCTTTAACTGTAACTTATAATAGTGGAATGGTTAAAAAGCCATTATACTAAAGAGTA
CACGAAGTACTTAATCGCTTAGGTTTATTTTATCAAGACATTTGTGTGGAGGCAAATATA
AATGAAGAAAGTTTGATTTAGTGGGTAAACTAAGACCCTGAATATGATTATGCCGAATTA
GAGCTTTCTCTTGAGAAATGGATAGATTCAAAGTACTAGCGTTCATAGAACAATGATGAA
AAATAATATTATTAAATTCGTTCTCAATATTTAAAAAGATTAGATATAAATTAATAGCTA
GCAAACTAATGGCTAGAGGCACCAAATATTGATAAAATTCCTTAAAATGACCAACCAAAT
GAGTATCTAATACCTATAAGCATTGATATTGAATTGGATGGATAGACTTTTAAAGAAAAT
ATAATTTGGAATTATTATGAACCATATTTTACTCCAGAAAACTTTGCTCATCACTTAGCA
AAAGAAAACAGATTAAGTCCTAATATAGAATAAGAAGTAGTTAATGTAATCCGCAGAGCT
CTTTAAAACTATCGCTTCTACGATCCTAAGGAAAGAGAGCTCATCCGTACTATTGAATTA
AATATATTGATAGAAAATGTATAGCTAAAAGATAGATTTGAGTGGGATATTAATGATTTC
ACAAATTCTCCAGAATAATTTGCTTTTAATATGTGCAATGAATTAGGTCTTAGTGGAGAA
TTTGCATAGAGAATAGCGTATTAAATAAGAGAATAGATTCTCTCCTTCTAAAAATAAATT
ATGGAAAGACGTATAAACTAAACTGCATCTAATTTCAAGAAGTCTACTCGTTCTTTAATT
GAATCCTCTTAAAATTTCACAAACTTTGACCCCAAAATTCACATCTAAGGAAATACAGTA
ATTACAGAAGAAAATTATTTACGTCCTGTACTTTAAGATAATGATTATGATAGTTTTCAA
TGGGAGCCAAAAATTTCAATCTTATAACCAGATGATATTAGAAAGGTATAGAAAGAAGAA
TAGAGAAAGCAACGTCTTATGCGTAGAACTCGTTGA