Identifiers and Description

Gene Model Identifier

TTHERM_00304150

Standard Name

SNF5

Aliases

PreTt21221 | 29.m00182 | 3696.m00005

Description

Conserved protein. Member of the SWI/SNF complex.

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• nuclear chromosome (IEA) | GO:0000228

Biological Process

• chromatin remodeling (IEA) | GO:0006338

Domains

• ( PF04855 ) SNF5 / SMARCB1 / INI1

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.4%

TetraMine Data

TTHERM_00304150

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_11574.1	9.997093137033517e-262	hypothetical protein (354 aa)
Oxytricha	Contig1260.1.g26	5.997739233660418e-28	SNF5 / SMARCB1 / INI1
WormBase	WBGene00011111	2.9990241513684e-21	locus:snfc-5 status:Confirme d UniProt:Q21831 protein_i d:CAA83625.1
SGD	YLR321C	9.004296568159186e-20	SFH1 Component of the RSC chro matin remodeling complex; esse ntial gene required for cell c ycle progression and maintenan ce of proper ploidy; phosphory lated in the G1 phase of the c ell cycle; Snf5p paralog
Stentor Coeruleus	SteCoe_10796	8.533047625744066e-17
DictyBase	DDB_G0279373	7.003160085026828e-16	snf5 on chromosome: 3 position 2004876 to 2006425

General Information

No Data fetched for General Information

Associated Literature

1. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences

>TTHERM_00304150(coding)
ATGTCTTTAACTGTAACTTATAATAGTGGAATGGTTAAAAAGCCATTATACTAAAGAGTA
CACGAAGTACTTAATCGCTTAGGTTTATTTTATCAAGACATTTGTGTGGAGGCAAATATA
AATGAAGAAAGTTTGATTTAGTGGGTAAACTAAGACCCTGAATATGATTATGCCGAATTA
GAGCTTTCTCTTGAGAAATGGATAGATTCAAAGTACTAGCGTTCATAGAACAATGATGAA
AAATAATATTATTAAATTCGTTCTCAATATTTAAAAAGATTAGATATAAATTAATAGCTA
GCAAACTAATGGCTAGAGGCACCAAATATTGATAAAATTCCTTAAAATGACCAACCAAAT
GAGTATCTAATACCTATAAGCATTGATATTGAATTGGATGGATAGACTTTTAAAGAAAAT
ATAATTTGGAATTATTATGAACCATATTTTACTCCAGAAAACTTTGCTCATCACTTAGCA
AAAGAAAACAGATTAAGTCCTAATATAGAATAAGAAGTAGTTAATGTAATCCGCAGAGCT
CTTTAAAACTATCGCTTCTACGATCCTAAGGAAAGAGAGCTCATCCGTACTATTGAATTA
AATATATTGATAGAAAATGTATAGCTAAAAGATAGATTTGAGTGGGATATTAATGATTTC
ACAAATTCTCCAGAATAATTTGCTTTTAATATGTGCAATGAATTAGGTCTTAGTGGAGAA
TTTGCATAGAGAATAGCGTATTAAATAAGAGAATAGATTCTCTCCTTCTAAAAATAAATT
ATGGAAAGACGTATAAACTAAACTGCATCTAATTTCAAGAAGTCTACTCGTTCTTTAATT
GAATCCTCTTAAAATTTCACAAACTTTGACCCCAAAATTCACATCTAAGGAAATACAGTA
ATTACAGAAGAAAATTATTTACGTCCTGTACTTTAAGATAATGATTATGATAGTTTTCAA
TGGGAGCCAAAAATTTCAATCTTATAACCAGATGATATTAGAAAGGTATAGAAAGAAGAA
TAGAGAAAGCAACGTCTTATGCGTAGAACTCGTTGA

>TTHERM_00304150(protein)
MSLTVTYNSGMVKKPLYQRVHEVLNRLGLFYQDICVEANINEESLIQWVNQDPEYDYAEL
ELSLEKWIDSKYQRSQNNDEKQYYQIRSQYLKRLDINQQLANQWLEAPNIDKIPQNDQPN
EYLIPISIDIELDGQTFKENIIWNYYEPYFTPENFAHHLAKENRLSPNIEQEVVNVIRRA
LQNYRFYDPKERELIRTIELNILIENVQLKDRFEWDINDFTNSPEQFAFNMCNELGLSGE
FAQRIAYQIREQILSFQKQIMERRINQTASNFKKSTRSLIESSQNFTNFDPKIHIQGNTV
ITEENYLRPVLQDNDYDSFQWEPKISILQPDDIRKVQKEEQRKQRLMRRTR

>TTHERM_00304150(gene)
ATGTCTTTAACTGTAACTTATAATAGTGGAATGGTTAAAAAGCCATTATACTAAAGAGTA
CACGAAGTACTTAATCGCTTAGGTTTATTTTATCAAGACATTTGTGTGGAGGCAAATATA
AATGAAGAAAGTTTGATTTAGTGGGTAAACTAAGACCCTGAATATGATTATGCCGAATTA
GAGCTTTCTCTTGAGAAATGGATAGATTCAAAGTACTAGCGTTCATAGAACAATGATGAA
AAATAATATTATTAAATTCGTTCTCAATATTTAAAAAGATTAGATATAAATTAATAGCTA
GCAAACTAATGGCTAGAGGCACCAAATATTGATAAAATTCCTTAAAATGACCAACCAAAT
GAGTATCTAATACCTATAAGCATTGATATTGAATTGGATGGATAGACTTTTAAAGAAAAT
ATAATTTGGAATTATTATGAACCATATTTTACTCCAGAAAACTTTGCTCATCACTTAGCA
AAAGAAAACAGATTAAGTCCTAATATAGAATAAGAAGTAGTTAATGTAATCCGCAGAGCT
CTTTAAAACTATCGCTTCTACGATCCTAAGGAAAGAGAGCTCATCCGTACTATTGAATTA
AATATATTGATAGAAAATGTATAGCTAAAAGATAGATTTGAGTGGGATATTAATGATTTC
ACAAATTCTCCAGAATAATTTGCTTTTAATATGTGCAATGAATTAGGTCTTAGTGGAGAA
TTTGCATAGAGAATAGCGTATTAAATAAGAGAATAGATTCTCTCCTTCTAAAAATAAATT
ATGGAAAGACGTATAAACTAAACTGCATCTAATTTCAAGAAGTCTACTCGTTCTTTAATT
GAATCCTCTTAAAATTTCACAAACTTTGACCCCAAAATTCACATCTAAGGAAATACAGTA
ATTACAGAAGAAAATTATTTACGTCCTGTACTTTAAGATAATGATTATGATAGTTTTCAA
TGGGAGCCAAAAATTTCAATCTTATAACCAGATGATATTAGAAAGGTATAGAAAGAAGAA
TAGAGAAAGCAACGTCTTATGCGTAGAACTCGTTGA