Identifiers and Description

Gene Model Identifier

TTHERM_00925560

Standard Name

SNF12

Aliases

PreTt04363 | 165.m00081 | 3747.m00334

Description

Member of the SWI/SNF complex.

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.7%

TetraMine Data

TTHERM_00925560

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_20685.1	9.997093137033517e-262	SWIB/MDM2 domain-containing pr otein (558 aa)
WormBase	WBGene00044072	6.99697739292434e-35	locus:ham-3 status:Confirmed UniProt:Q09646 protein_id :CAA87424.1
DictyBase	DDB_G0273725	1.9991517704232713e-32	snf12-2 on chromosome: 2 posit ion 3329319 to 3330893
Oxytricha	Contig940.0.g8	8.000721090200152e-18	SWIB/MDM2 domain
Stentor Coeruleus	SteCoe_28765	0.00000000003775134544279098
SGD	YOR295W	0.000019995566179747357	UAF30 Subunit of UAF (upstream activation factor), which is an RNA polymerase I specific t ranscription stimulatory facto r composed of Uaf30p, Rrn5p, R rn9p, Rrn10p, histones H3 and H4; deletion decreases cellula r growth rate

General Information

No Data fetched for General Information

Associated Literature

1. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences

>TTHERM_00925560(coding)
ATGTAAAATTAATAGGTAAATCCAGCAGCTGGCATGAGTGCTCCTTAAAACCCAAATATG
ATGAATGGCTAGTAACGCCCCTTGGGACCTCCCTAGCCCTAAGGACACTTTTAAAGAAAT
TAGATGGCTAATCCTCAAGGACAAGGAGGAATGGGAGGAAATTAATAAGGTGTAATTTAT
GGATAAGGTGGATAATAAGGCCACCCACAATAGCAAATTATGAGTTAATAATAAGGAGTT
TAGCCAAATCAATAATAAAATATTCCATAGTAATAACAGCAGCAATAAGGTTCATAATCG
CACGCAGCATAAGAAAGTTATATTGACCCAAAATAGCTGATTCATTCGATTTATGAAAAG
GGTAATATTGGGTATTCTGAGTGTGATGAAGAATTATTAAAAATAGCCCCAGAATTTGAA
TTACTTAATTAGCTTGTTAAATATGAAGGAATGATTGATAAAATGGTGAAAAGAAAGAGA
TTCGATTTACAGGAATAGTTTGCAAGACCAAATTAAAAGACAAAACAAATATTCAGAATG
TACATTACTAATGACTATACTTTAGTACCTTAGGGACCTCATATAGATAATGATCCCATG
CAAATTGAATAAGAAGAACAATATATATGGAATCTTAAAATATATGGACATTTGCTTTAA
GAAGACAAGACTAACGCATCATATTTGACAACTCCTAAGCAATATTTTTCAAATTTCTTC
TCAAAAATCACTGTAGAATTCAAGGATCCTCTTTTCAGCAGCGAACCCGTTTAATGGAGA
AAGTCAGATAAGGTAGAGTAGGGAATAATCATTCGCAAATAAAGCAGCAAGGAAACAGTA
GTTACAATTCATATTCATTTGTATCACAACCCTTTGAAGTTTAGAGTTGATCCTAAGCTC
GCTTCAATTATTGGGTTTGAAATTTGCACTAGATCAACTGCTTTGGCTGCTATTTGGGAA
TATATTAAGCTTAAAAATTTGTAAGACAGTGAAAATAAAAGTGAGATAAATTGTGATGAT
GCGATGAGAAGCGTATTCTTACAAGACAAAATAAACATAGGACAAATCACAGCAAAATTG
AGATAACTCTTAACTATTCCAAATTAAACAACAATAAGACACCAAATTAAACTTAGCGGC
ACTCCTGAAGAAAACGAAAGAGTTTATGATTTTGTGGTAGACGTAGATAGTTAATTGGGT
ATGGAAATTATGCCTTTCTTCTCTCAAAAGGTCGTTTTATAGGAAAAGAAAGATTCACAA
AAGCATCCCTTCATTACCTTAAACTAAAAGATTAAAGATTTAGATAAAAAATTTACAGAA
ACATTAGAAAAAATAAAATCACATAAGTTCAAAAGAGATTCGTATTTCGCCTACACCTTA
GATCCATCTCTTTATATAGAAAATACTATCTTACAATAAAATATATACTTATAGATGATG
AAAGAAGATAAATAATGTCCTATCGATGATCCTACTTCCTTGCAATACATGATGGATAAC
GAAGATTTGGTTGAAAGAGAGATTAAAAGATATCTCGATAATTTGGATGGAATTAAGGGA
GAAAGAGAATTTGAACTTTATTAATAAGAAATGCTTAACAACTAGAATACATATGATGCA
ACAAGCAATGCAAACCAATCATAATAACAGCTTTGA

>TTHERM_00925560(protein)
MQNQQVNPAAGMSAPQNPNMMNGQQRPLGPPQPQGHFQRNQMANPQGQGGMGGNQQGVIY
GQGGQQGHPQQQIMSQQQGVQPNQQQNIPQQQQQQQGSQSHAAQESYIDPKQLIHSIYEK
GNIGYSECDEELLKIAPEFELLNQLVKYEGMIDKMVKRKRFDLQEQFARPNQKTKQIFRM
YITNDYTLVPQGPHIDNDPMQIEQEEQYIWNLKIYGHLLQEDKTNASYLTTPKQYFSNFF
SKITVEFKDPLFSSEPVQWRKSDKVEQGIIIRKQSSKETVVTIHIHLYHNPLKFRVDPKL
ASIIGFEICTRSTALAAIWEYIKLKNLQDSENKSEINCDDAMRSVFLQDKINIGQITAKL
RQLLTIPNQTTIRHQIKLSGTPEENERVYDFVVDVDSQLGMEIMPFFSQKVVLQEKKDSQ
KHPFITLNQKIKDLDKKFTETLEKIKSHKFKRDSYFAYTLDPSLYIENTILQQNIYLQMM
KEDKQCPIDDPTSLQYMMDNEDLVEREIKRYLDNLDGIKGEREFELYQQEMLNNQNTYDA
TSNANQSQQQL

>TTHERM_00925560(gene)
ATGTAAAATTAATAGGTAAATCCAGCAGCTGGCATGAGTGCTCCTTAAAACCCAAATATG
ATGAATGGCTAGTAACGCCCCTTGGGACCTCCCTAGCCCTAAGGACACTTTTAAAGAAAT
TAGATGGCTAATCCTCAAGGACAAGGAGGAATGGGAGGAAATTAATAAGGTGTAATTTAT
GGATAAGGTGGATAATAAGGCCACCCACAATAGCAAATTATGAGTTAATAATAAGGAGTT
TAGCCAAATCAATAATAAAATATTCCATAGTAATAACAGCAGCAATAAGGTTCATAATCG
CACGCAGCATAAGAAAGTTATATTGACCCAAAATAGCTGATTCATTCGATTTATGAAAAG
GGTAATATTGGGTATTCTGAGTGTGATGAAGAATTATTAAAAATAGCCCCAGAATTTGAA
TTACTTAATTAGCTTGTTAAATATGAAGGAATGATTGATAAAATGGTGAAAAGAAAGAGA
TTCGATTTACAGGAATAGTTTGCAAGACCAAATTAAAAGACAAAACAAATATTCAGAATG
TACATTACTAATGACTATACTTTAGTACCTTAGGGACCTCATATAGATAATGATCCCATG
CAAATTGAATAAGAAGAACAATATATATGGAATCTTAAAATATATGGACATTTGCTTTAA
GAAGACAAGGTAAAATTTATAGCAATAATTGGGATTGAATAGGTTTTCTAATGATTCTTT
TTATAACAGACTAACGCATCATATTTGACAACTCCTAAGCAATATTTTTCAAATTTCTTC
TCAAAAATCACTGTAGAATTCAAGGATCCTCTTTTCAGCAGCGAACCCGTTTAAGTAAAA
ATAAATTGAAGAAATGTTAATAAAGTATTAAGTATAATATTTGATGTAGTGGAGAAAGTC
AGATAAGGTAGAGTAGGGAATAATCATTCGCAAATAAAGCAGCAAGGAAACAGTAGTTAC
AATTCATATTCATTTGTATCACAACCCTTTGAAGTTTAGAGTAAATTTAAATAAATAAGG
AATAATAATTTTAAACAATATTTAAATGAATTGGTTAATAGGTTGATCCTAAGCTCGCTT
CAATTATTGGGTTTGAAATTTGCACTAGATCAACTGCTTTGGCTGCTATTTGGGAATATA
TTAAGGTAACTTAACGAAAATAATTAGAACTTTCAATTAATTATTTAATTATCTGCCAAA
TAATTTTCAATTCACTCTCTTTAAAATAGAGCGCGCAATTTGATGAATTATTTAAATATT
TAATCTACTATTTACTTATAACAAAAGCTTAAAAATTTGTAAGACAGTGAAAATAAAAGT
GAGATAAATTGTGATGATGCGATGAGAAGCGTAAAATTGCGATTATGGAATGCAAATTGA
ATGTTTAATTATAAAATTAACTTTAAAATAGGTATTCTTACAAGACAAAATAAACATAGG
ACAAATCACAGCAAAATTGAGATAACTCTTAACTATTCCAAATTAAACAACAATAAGACA
CCAAATTAAGTAACTATTTTAATGAAAATAAATGATTCTTATGATTGTAATTTAATTAGA
CTTAGCGGCACTCCTGAAGAAAACGAAAGAGTTTATGATTTTGTGGTAGACGTAGATAGT
TAATTGGGTATGGAAATTATGCCTTTCTTCTCTCAAAAGGTCGTTTTATAGGAAAAGAAA
GATTCACAAAAGCATCCCTTCATTACCTTAAACTAAAAGATTAAAGATTTAGATAAAAAA
TTTACAGAAACATTAGAAAAAATAAAATCACATAAGTTCAAAAGAGATTCGTATTTCGCC
TACACCTTAGATCCATCTCTTTATATAGAAAATACTATCTTACAATAAAATATATACTTA
TAGGTAATTATTAAATTCTAATAAGAATCATTATTTTAATATATCTATTTCATTTAAAAG
ATGATGAAAGAAGATAAATAATGTCCTATCGATGATCCTACTTCCTTGCAATACATGATG
GATAACGAAGTAAAACACAAATTTTAATTTAAGCAATAAAATAAATTCAATAATTATTTT
CATTTTAGGATTTGGTTGAAAGAGAGATTAAAAGATATCTCGATAATTTGGATGGAATTA
AGGGAGAAAGAGAATTTGAACTTTATTAATAAGAAATGCTTAACAACTAGAATACATATG
ATGCAACAAGCAATGCAAACCAATCATAATAACAGCTTTGA