Identifiers and Description
Gene Model Identifier
TTHERM_00294810Standard Name
SMC3 (Structural Maintenance of Chromosomes 3)Aliases
PreTt15591 | 27.m00251 | 3692.m00054Description
SMC3 SMC family carboxy-terminal domain protein; SMC family; C-terminal domain containing protein; cohesin complex memberGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Cellular Component
- cohesin complex (IDA) | GO:0008278 | Ref:23555314
- chromosome (IEA) | GO:0005694
Molecular Function
- ATP binding (IEA) | GO:0005524
Biological Process
- chromosome segregation (IDA) | GO:0007059 | Ref:23555314
Domains
- ( PF01576 ) Myosin tail
- ( PF02370 ) M protein repeat
- ( TIGR01612 ) rhoptry protein
- ( PF08791 ) Viral envelope protein
- ( PF00515 ) tetratricopeptide repeat
- ( PF07719 ) tetratricopeptide repeat
- ( PF04702 ) Vicilin N terminal region
- ( TIGR00634 ) DNA repair protein RecN
- ( PF00038 ) Intermediate filament protein
- ( PF02463 ) RecF/RecN/SMC N terminal domain
- ( TIGR00019 ) peptide chain release factor 1
- ( PF08946 ) Osmosensory transporter coiled coil
- ( TIGR00864 ) polycystin cation channel protein
- ( PF00005 ) ABC transporter, ATP-binding protein
- ( TIGR02168 ) chromosome segregation protein SMC
- ( TIGR02169 ) chromosome segregation protein SMC
- ( PF07197 ) Protein of unknown function (DUF1409)
- ( TIGR03185 ) DNA sulfur modification protein DndD
- ( TIGR00253 ) conserved hypothetical protein TIGR00253
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.7%
TetraMine Data
TTHERM_00294810
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_08738.1 9.997093137033517e-262 SMC family domain-containing p
rotein (1161 aa)
SGD YJL074C 5.001636743996964e-56 SMC3 Subunit of the multiprote
in cohesin complex required fo
r sister chromatid cohesion in
mitotic cells; also required,
with Rec8p, for cohesion and
recombination during meiosis;
phylogenetically conserved SMC
chromosomal ATPase family mem
ber
Oxytricha Contig17078.0.g58 2.000704504372864e-47 RecF/RecN/SMC N terminal domai
n
WormBase WBGene00004873 1.999534248571833e-46 locus:smc-3 status:Confirmed
UniProt:Q9U2C1 protein_id
:CAB57898.4
DictyBase DDB_G0284499 1.9993007828132465e-27 smc2 on chromosome: 4 position
2051268 to 2054927
Stentor Coeruleus SteCoe_15774 0.0000000001026187963170189
General Information
No Data fetched for General Information
Associated Literature
- Ref:23555314: Howard-Till RA, Lukaszewicz A, Novatchkova M, Loidl J (2013) A single cohesin complex performs mitotic and meiotic functions in the protist tetrahymena. PLoS genetics 9(3):e1003418
Sequences
>TTHERM_00294810(coding)
ATGAGCATTAAATCAATATCTATAGAAAAATTTAAAAGTTACTCTAACTGCAAGATAGAA
GGACTCTCTGACAATATAAATATTCTGTATGGCAAGAATGGTTCTGGAAAATCTAATTTG
TTGGCTGCTTTATCATTTATAAGTTCTGATTAGTACGATAGAGCTGATCGAGCATAATTA
ATGAAAAATTATAAAGAAGGTGATCCTAAGGTCGAAATAGAGTTAGATAATTTAGTTAAA
ATAGATAAAAAAGATATGGAAGATGAGCCAAAAGCACAAAAAGTTATTCCTACCAGCGGT
GATAGTGTTTTATTAAGTAGAACTTTAGAGTAAAGGGAGAATGTTTATAGGGTAGATGAT
AGAGTTGTTAATTTAAATTAGTTTAATAATATTTTTGAGTGCTTTGGTCTTTCAAGAAAG
AATCCTTTTACAATAGTTGCATAAAATAGAATTTAAGAAATATCAAACATGAGTGATTCA
GAAATCTATAAGTTGTTACAGCAAGTAGCTGGAATAGAAGCTTTTATGAATAAATAAGAA
AAAGCAGAAGAGCTTTTCGAAAAAGCTTAGAGAGAAAAGGAAGGCATAGATTAATCCTTA
CAAGAAATAGAAGATAAAATAAGCTAGTTAAGTGGTGAGAAAGAATAGTATGCACAAAAT
TAAGAATAGGAAATTATTATATAAAGCTTGTAATCTATCTATTATGATAAATTGAAAGAA
GAGCTTTAAAAGAAGAAATTAGAATGCAACAAAGAAATCAATAATCAAAAATTGTAAGAA
GAGAAGTAAAAGCTTCAGGATTTATAAAATTAGAAAGAAGCTAAAAATGAAGAACTATTA
AGATTTAAAGAAAAATTGCAAAGATTAACAGTTATAGAAGAGCAAGTAAAATCAGATTAA
ATGAATCTTTAAAACAAAGTCAACAGTCTTGAGTAGAATATCTAAAAATTAAAATCAATA
AAAACTAACAAAGATGAAAAAGAAATTGAAGCAAGATTAAAAGAAGTTAATATTTAATGC
ACTAAATTATAAAAAGATCTTGATGAAGTCATTGATAAAATAACAAATGAAAAAGATGGG
ATTGACACCAAGCAGTAAGAATATGAGCAATTAGTCTTAAGAGAAAAGTTTAAAACTTAG
TAAGAAAAGCAAAGCTATTTTAATCAGAGAATCCAAGACATTAAACAAAGTATTAGTGAA
AAATCATAAACTTAACAGAATCTTAAAGAGAAAGTGAAAAAATCTGAATAAAGACTAAAC
TTAGTTAATTAAGAAATTGAAAAATTGTAAAATCAAATAAATAGTTTTTAAACTGAATCC
AATAAGGCACAAAAAACTATAAATGATAAAAAGAATTAAATCTAAAAATTGAGACAAGAG
TAGCTTGAAAAGAGAAAGACAATTAATGATAAAAAAATAGAGTTGGAAGATTTAAACAAC
TAAATAAAAAAGAGAGTTGATGATATACAAAAGTAGTTGAAATCAGGATTAATCCAAGCA
ATTGAGCAAATCGAGGAATCAATATAAAAAGAAGGTATTTAGGGATATAAAGGACTGCTT
ATAGATCATCTTTAATTTAATTCTGCACTTACTTATGCATATGATATTGCTCAAAAAGGA
AAATTATTTTCTTTGATAGTCGATAATCAAAATACTGCCTCTTTAATAATTGATATTGTT
AAGAAATTGAAGATTAAAACATCAAATTTAAATATTATTCCCCTAGATTGGGTTGAAGAT
GATATTGATGATGAAAAAGAAAACTAAATTGCAGGATTCGGATTTTAAAAGCTATTTGAT
ACTAGGTATGTTAAGGCAAAAGGAGATCATGCAGATGATATAAAAAGGTTAGCTAAGAAT
ATTTTTGAAAAATATGGTGTAATTAAAGAGTATGAACATGCCCTAGAGGTAGCATCTTAA
TTTAAAGTAAACTGCATTACAGAGAAGAGATAAATTGTTTATAGTGGAGGTTTTATTTCT
CATGTTGGTTTTTGTACTGTGGCTAAAGTAGATAAAATAACACTTTACAATGAATACAAA
AGCTTTAAAGCTAAGAAAGATGCTATTGCTAAAGAAATAGAGCAACTAGAGAAGTCTATG
AATGATATTTAATTGTAATAAAATGATATAAATTCAAATGTAAGCAAAGAATAAGCTAGC
TTAGCAAAATAGAGTAACACTATATTTATGAATCGTTAACTAATTAAATCATCTGAAGTA
GAGAAAAAAGTATTGACTGATGAGTTAAACGAAACAAATTAACTCCTATAGTCTTTTTCT
TAATAACTTAAAGATTTAGAATAAGAGAAAATAGGTTTAGAAAATACTAGCAAATCCTCT
AAATTTGAACCCTTGAATTAAGAGGACAAGTAAAAAATGTATAAACTATAAGAAGAAATT
AAGTCTAAAACTACTGTTTTGTAAAAATCTCTGAAAGAAAAGTAAAATGTAGAAAAAGAG
TATAACAAGTATAGAAATGAAGAATAATAGCTAACTAATCATTTATCCCAATTATCAGAA
GGTGGTGGTATGAAAGATGGTGAAGTCTTATTTTAAAGCATTGATCAAAGAATAAGTTCT
TCAGAGTAAGACCTCAAACATCAAGAAAGTATTCTCAAAGCTTAAAAAGCAATTGTGGAA
AAAGCTACACAAAGTAAGAAAACACTCGAAGAATAAATAAAAAAGATTGAGGGAGAAAGC
TAAGATAAGCTGAAAGAGCAAATTCAAAGCTAGTAAGAACTTTGCAATAATTTAGAATAA
TAAATCAGTGCTTTACTTCTCCGTAAACAACAATATATTTCAAAAGAGTACGAAATAGAT
TAAAAAAAGGAATTACTAGTAGTAAGCCCTGATTTTATCCAAAAAAATTCTCATCTTTCT
AAAGATAATTTAAAAGATAAGCTGAATAGAATTACTTAATAAACAACCATTAAGAAATAC
ACAGCAAAAGATAAAATTCTATTTGAAAAATTAAAAGATTTGGACGAGAAATATGAAGAA
TACAAATCCAAATACACTGAATTAACAAAAAATGAAGAATAAGCCAAAAATCTAATTGAT
TAATTTAAATCAAAATGTGAATAAACTATTAAAATGGCATTTTCTAAGTTTGAGCATTAT
ATGAAAAATTATTTCAAATAAATATCTTCTGCAGGTACAATAGACGTTAAACTTATGCAT
AATCATGAAATCAGTATATCAGTTGCTTTTAAATAAACTACAAATGAAACAAAAAAGACA
AATAGAAAAGAGCTAAGTGGAGGAGAAAAGAGTTGTCTTGCTATTCTTATTTTAATGGCT
CTATAGAGATGTGATCCAGCTCCATACTATATATTTGATGAATTTGATGCAGCATTAGAC
GCTGGTTATATTAGACCTATTGCAAAGATGTAAGTTAATTTTTAATTAAGTATTAAATTA
ATAACACATACTTATTTATTTATTTACTATTACGCAAAAGAATATCTGAAAATAGCTAAA
AGTCTTAATTTTTAATTGTTTCACACAAGTTTGAATTTTTATAAGCTTTACAACAAGAAA
ATTGTAAGTGCTTCTAGATATCACTAAAAGACAAAATAAGCGAGATAGAAGAGAAGACTT
TATCAGCTGCAATAAATTTTGTTAAAAATGGTTGAAAATGTGTTAAAAAGATAAATAGTT
TTTCCAAAAATTAGTCTCCATATAATTAATTATAAATTAAAATATTTTTCCATATATTTA
TTAACTGTATGTAATTTTAATCTAAATCATCAAATAGAGCATTCATTTTTTTTTTTAGCT
TACAAAATTTGTGGCTTATAATTCAATCTTATTTATTTAATTAATTTTAATTAAGAAGCT
GCTTAATTTTCTTGTGTTTATTTATGA>TTHERM_00294810(protein)
MSIKSISIEKFKSYSNCKIEGLSDNINILYGKNGSGKSNLLAALSFISSDQYDRADRAQL
MKNYKEGDPKVEIELDNLVKIDKKDMEDEPKAQKVIPTSGDSVLLSRTLEQRENVYRVDD
RVVNLNQFNNIFECFGLSRKNPFTIVAQNRIQEISNMSDSEIYKLLQQVAGIEAFMNKQE
KAEELFEKAQREKEGIDQSLQEIEDKISQLSGEKEQYAQNQEQEIIIQSLQSIYYDKLKE
ELQKKKLECNKEINNQKLQEEKQKLQDLQNQKEAKNEELLRFKEKLQRLTVIEEQVKSDQ
MNLQNKVNSLEQNIQKLKSIKTNKDEKEIEARLKEVNIQCTKLQKDLDEVIDKITNEKDG
IDTKQQEYEQLVLREKFKTQQEKQSYFNQRIQDIKQSISEKSQTQQNLKEKVKKSEQRLN
LVNQEIEKLQNQINSFQTESNKAQKTINDKKNQIQKLRQEQLEKRKTINDKKIELEDLNN
QIKKRVDDIQKQLKSGLIQAIEQIEESIQKEGIQGYKGLLIDHLQFNSALTYAYDIAQKG
KLFSLIVDNQNTASLIIDIVKKLKIKTSNLNIIPLDWVEDDIDDEKENQIAGFGFQKLFD
TRYVKAKGDHADDIKRLAKNIFEKYGVIKEYEHALEVASQFKVNCITEKRQIVYSGGFIS
HVGFCTVAKVDKITLYNEYKSFKAKKDAIAKEIEQLEKSMNDIQLQQNDINSNVSKEQAS
LAKQSNTIFMNRQLIKSSEVEKKVLTDELNETNQLLQSFSQQLKDLEQEKIGLENTSKSS
KFEPLNQEDKQKMYKLQEEIKSKTTVLQKSLKEKQNVEKEYNKYRNEEQQLTNHLSQLSE
GGGMKDGEVLFQSIDQRISSSEQDLKHQESILKAQKAIVEKATQSKKTLEEQIKKIEGES
QDKLKEQIQSQQELCNNLEQQISALLLRKQQYISKEYEIDQKKELLVVSPDFIQKNSHLS
KDNLKDKLNRITQQTTIKKYTAKDKILFEKLKDLDEKYEEYKSKYTELTKNEEQAKNLID
QFKSKCEQTIKMAFSKFEHYMKNYFKQISSAGTIDVKLMHNHEISISVAFKQTTNETKKT
NRKELSGGEKSCLAILILMALQRCDPAPYYIFDEFDAALDAGYIRPIAKMQVNFQLSIKL
ITHTYLFIYYYAKEYLKIAKSLNFQLFHTSLNFYKLYNKKIVSASRYHQKTKQARQKRRL
YQLQQILLKMVENVLKRQIVFPKISLHIINYKLKYFSIYLLTVCNFNLNHQIEHSFFFLA
YKICGLQFNLIYLINFNQEAAQFSCVYL>TTHERM_00294810(gene)
ATGAGCATTAAATCAATATCTATAGAAAAATTTAAAAGTTACTCTAACTGCAAGATAGAA
GGACTCTCTGACAATATAAATATTCTGTATGGCAAGAATGGTTCTGGAAAATCTAATTTG
TTGGCTGGTACATAAAAAATATTACTTAGAAATTTAGCTTTTAATATATTTTTTTTGCTA
AAATTAGCTTTATCATTTATAAGTTCTGATTAGTACGATAGAGCTGATCGAGCATAATTA
ATGAAAGTAATATATATTTTCATAAATAAATTCTAAATTAAGAACTAACCTATTTTTATT
TTATATAGAATTATAAAGAAGGTGATCCTAAGGTCGAAATAGAGTTAGATAATTTAGTTA
AAATAGATAAAAAAGATATGGAAGATGAGCCAAAAGCACAAAAAGTTATTCCTGTACTCT
TTTTTATGAGTTTTATTAATTTAATTATTTTGTATTATTGTTCAAATTGATGAAAAATGT
TAATTTTTATTTAATATTCTTATTTAGACCAGCGGTGATAGTGTTTTATTAAGTAGAACT
TTAGAGTAAAGGGAGAATGTTTATAGGGTAGATGATAGAGTTGTTAATTTAAATTAGTTT
AATAATATTTTTGAGTGCTTTGGTCTTTCAAGAAAGAATCCTTTTACAATAGTTGCATAA
AATAGAATTTAAGAAATATCAAACATGAGTGATTCAGAAATCTATAAGTTGTTACAGCAA
GTAGCTGGAATAGAAGCTTTTATGAATAAATAAGAAAAAGCAGAAGAGCTTTTCGAAAAA
GCTTGTAATTTTTTATTTTAATACTAAATAATAATATGAAGGAAATATAATTTTAAAGAG
AGAGAAAAGGAAGGCATAGATTAATCCTTACAAGAAATAGAAGATAAAATAAGCTAGTTA
AGTGGTGAGAAAGAATAGTATGCACAAAATTAAGAATAGGAAATTATTATATAAAGGTAT
AAAAAACATTATTGCCTTTGAAAATATAAATATGTTTTTTTAATATTTTATTAGCTTGTA
ATCTATCTATTATGATAAATTGAAAGAAGAGCTTTAAAAGAAGAAATTAGAATGCAACAA
AGAAATCAATAATCAAAAATTGTAAGAAGAGAAGTAAAAGCTTCAGGATTTATAAAATTA
GAAAGAAGCTAAAAATGAAGAACTATTAAGATTTAAAGAAAAATTGCAAAGATTAACAGT
TATAGAAGAGCAAGTAAAATCAGATTAAATGAATCTTTAAAACAAAGTCAACAGTCTTGA
GTAGAATATCTAAAAATTAAAATCAATAAAAACTAACAAAGATGAAAAAGAAATTGAAGC
AAGATTAAAAGAAGTTAATATTTAATGCACTAAATTATAAAAAGATCTTGATGAAGTCAT
TGATAAAATAACAAATGAAAAAGATGGGTAAATAAATCATTTTAATATGAATAAAAAAAT
TTTTATTGATGTTTAATTTTGATAAAGGATTGACACCAAGCAGTAAGAATATGAGCAATT
AGTCTTAAGAGAAAAGTTTAAAACTTAGTAAGAAAAGCAAAGCTATTTTAATCAGAGAAT
CCAAGACATTAAACAAAGTATTAGTGAAAAATCATAAACTTAACAGAATCTTAAAGAGAA
AGTGAAAAAATCTGAATAAAGACTAAACTTAGTTAATTAAGAAATTGAAAAATTGTAAAA
TCAAATAAATAGTTTTTAAACTGAATCCAATAAGGCACAAAAAACTATAAATGGTAATTA
ATTAATTAAAATATTTAAATTATTTTTATTAACTTAAAATTAGATAAAAAGAATTAAATC
TAAAAATTGAGACAAGAGTAGCTTGAAAAGAGAAAGACAATTAATGATAAAAAAATAGAG
TTGGAAGATTTAAACAACTAAATAAAAAAGAGAGTTGATGATATACAAAAGTAGTTGAAA
TCAGGATTAATCCAAGCAATTGAGCAAATCGAGGAATCAATATAAAAAGAAGGTATTTAG
GGATATAAAGGACTGCTTATAGATCATCTTTAATTTAATTCTGCACTTACTTATGCATAT
GATATTGCTCAAAAAGGTATTTCACATTTTTTATTTTTCTTGCAAATATTTATTTTTTTA
TAAACTTATTGCTAGGAAAATTATTTTCTTTGATAGTCGATAATCAAAATACTGCCTCTT
TAATAATTGATATTGTTAAGAAATTGAAGATTAAAACATCAAATTTAAATATTATTCCCC
TAGATTGGGTTGAAGATGATATTGATGATGAAAAAGAAAACTAAATTGCAGGATTCGGAT
TTTAAAAGCTATTTGATACTAGGTATGTTAAGGCAAAAGGAGATCATGCAGATGATATAA
AAAGGTTAGCTAAGAATATTTTTGAAAAATATGGTGTAATTAAAGAGTATGAACATGCCC
TAGAGGTAGCATCTTAATTTAAAGTAAACTGCATTACAGAGAAGAGATAAATTGTTTATA
GTGGAGGTTTTATTTCTCATGTTGGTTTTTGTACTGTGGCTAAAGTAGATAAAATAACAC
TTTACAATGAATACAAAAGCTTTAAAGCTAAGAAAGATGCTATTGCTAAAGAAATAGAGC
AACTAGAGAAGTCTATGAATGATATTTAATTGTAATAAAATGATATAAATTCAAATGTAA
GCAAAGAATAAGCTAGCTTAGCAAAATAGAGTAACACTATATTTATGAATCGTTAACTAA
TTAAATCATCTGAAGTAGAGAAAAAAGTATTGACTGATGAGTTAAACGAAACAAATTAAC
TCCTATAGTCTTTTTCTTAATAACTTAAAGATTTAGAATAAGAGAAAATAGGTTTAGAAA
ATACTAGCAAATCCTCTAAATTTGAACCCTTGAATTAAGAGGACAAGTAAAAAATGTATA
AACTATAAGAAGAAATTAAGTCTAAAACTACTGTTTTGTAAAAATCTCTGAAAGAAAAGT
AAAATGTAGAAAAAGAGTATAACAAGTATAGAAATGAAGAATAATAGCTAACTAATCATT
TATCCCAATTATCAGAAGGTGGTGGTATGAAAGATGGTGAAGTCTTATTTTAAAGCATTG
ATCAAAGAATAAGTTCTTCAGAGTAAGACCTCAAACATCAAGAAAGTATTCTCAAAGCTT
AAAAAGCAATTGTGGAAAAAGCTACACAAAGTAAGAAAACACTCGAAGAATAAATAAAAA
AGATTGAGGGAGAAAGCTAAGATAAGCTGAAAGAGCAAATTCAAAGCTAGTAAGAACTTT
GCAATAATTTAGAATAATAAATCAGTGCTTTACTTCTCCGTAAACAACAATATATTTCAA
AAGAGTACGAAATAGATTAAAAAAAGGAATTACTAGTAGTAAGCCCTGATTTTATCCAAA
AAAATTCTCATCTTTCTAAAGATAATTTAAAAGATAAGCTGAATAGAATTACTTAATAAA
CAACCATTAAGAAATACACAGCAAAAGATAAAATTCTATTTGAAAAATTAAAAGATTTGG
ACGAGAAATATGAAGAATACAAATCCAAATACACTGAATTAACAAAAAATGAAGAATAAG
CCAAAAATCTAATTGATTAATTTAAATCAAAATGTGAATAAACTATTAAAATGGCATTTT
CTAAGTTTGAGCATTATATGAAAAATTATTTCAAATAAATATCTTCTGCAGGTACAATAG
ACGTTAAACTTATGCATAATCATGAAATCAGTATATCAGTTGCTTTTAAATAAACTACAA
ATGGTATTTTTAAAGCATCAAAAAAAAGTATTTAACAAAATATTTATTATATTAGAAACA
AAAAAGACAAATAGAAAAGAGCTAAGTGGAGGAGAAAAGAGTTGTCTTGCTATTCTTATT
TTAATGGCTCTATAGAGATGTGATCCAGCTCCATACTATATATTTGATGAATTTGATGCA
GCATTAGACGCTGGTTATATTAGACCTATTGCAAAGATGTAAGTTAATTTTTAATTAAGT
ATTAAATTAATAACACATACTTATTTATTTATTTACTATTACGCAAAAGAATATCTGAAA
ATAGCTAAAAGTCTTAATTTTTAATTGTTTCACACAAGTTTGAATTTTTATAAGCTTTAC
AACAAGAAAATTGTAAGTGCTTCTAGGTAAATATTGAATTTCAATTACTCTATTAAAATT
AATTTAAATAATAGATATCACTAAAAGACAAAATAAGCGAGATAGAAGAGAAGACTTTAT
CAGCTGCAATAAATTTTGTTAAAAATGGTTGAAAATGTGTTAAAAAGATAAATAGTTTTT
CCAAAAATTAGTCTCCATATAATTAATTATAAATTAAAATATTTTTCCATATATTTATTA
ACTGTATGTAATTTTAATCTAAATCATCAAATAGAGCATTCATTTTTTTTTTTAGCTTAC
AAAATTTGTGGCTTATAATTCAATCTTATTTATTTAATTAATTTTAATTAAGAAGCTGCT
TAATTTTCTTGTGTTTATTTATGA