Identifiers and Description

Gene Model Identifier

TTHERM_00954180

Standard Name

SEH1 (nucleoporin Seh1)

Aliases

PreTt04994 | 176.m00067 | Seh1

Description

Nucleoporin common to both MAC and MIC NPCs

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• nuclear pore (ISS) | GO:0005643 | Ref:19375312

Biological Process

• transport (ISS) | GO:0006810 | Ref:19375312

Domains

• ( PF07170 ) Sortase B
• ( PF00400 ) WD domain, G-beta repeat

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.4%

TetraMine Data

TTHERM_00954180

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_13504.1	9.997093137033517e-262	hypothetical protein (369 aa)
Oxytricha	Contig17748.0.g4	4.001118334825066e-42	WD domain, G-beta repeat
DictyBase	DDB_G0277257	3.000619078166531e-39	DDB_G0277257 on chromosome: 2 position 7833225 to 7834846
WormBase	WBGene00003804	3.99801309251602e-27	locus:npp-18 Nucleoporin SEH 1 status:Confirmed UniProt :O45933 protein_id:CAA16333. 1
SGD	YLR208W	5.00179831534194e-27	SEC13 Component of the Nup84 n uclear pore sub-complex, the S ec13p-Sec31p complex of the CO PII vesicle coat, and the SEA (Seh1-associated) complex; req uired for vesicle formation in ER to Golgi transport and nuc lear pore complex organization ; the Nup84 subcomplex has a r ole in transcription elongatio n

General Information

No Data fetched for General Information

Associated Literature

1. Ref:25788697: Iwamoto M, Koujin T, Osakada H, Mori C, Kojidani T, Matsuda A, Asakawa H, Hiraoka Y, Haraguchi T (2015) Biased assembly of the nuclear pore complex is required for somatic and germline nuclear differentiation in Tetrahymena. Journal of cell science 128(9):1812-23
2. Ref:19375312: Iwamoto M, Mori C, Kojidani T, Bunai F, Hori T, Fukagawa T, Hiraoka Y, Haraguchi T (2009) Two distinct repeat sequences of Nup98 nucleoporins characterize dual nuclei in the binucleated ciliate tetrahymena. Current biology : CB 19(10):843-7

Sequences

>TTHERM_00954180(coding)
ATGAATTAGGAAGGATTTCAAGCAATCAACACTTTTCATTAAGATATAATACACGATATA
TCATTTGACTGGTATGGTTAAAGACTAGTCACTTGTTCATCTGACAGAAATGTAAAAATT
TGGCATAAAAACTAATCAGGAAAATGGGATTTATACCACTCAATCACTAATCAAGAAGGT
CCAGTTAGGAAAGTAAAATGGGCTCATCCTTAATTTGGAACTATTTTGGCTGCATGCTCA
ATGGATCGCTCTATTCATATTTATTAAGAATATAAAGATATTACTTCAATACAAAAGGAT
CCCAATGAATAATAATTATAAAAATAATGGAAACCCATCAAAATCTATAACGACAAAGAA
GTTATTGAAGACATGAAATTTGCTCCTATACATGTTGGTTTAATATTAGCTGTTGCAAGA
GCTGATGGAAGGATTAGTATTTTCCAATTTAAAGATCTTTTGAACTTACAAATTCATGAG
CAAATCTCGAATATCTCTGTCTCTCCTTTAGGAATTAATAGTATTTCTTGGAACAAAAAT
AGATTTGATAAGAAGCATATGATTGCAGTCGGATGTAAAGATAGAGATACATCTCAAACT
AAAAATTAAAATGGAATTAACGGCGTCAATTAAAAGTATATCGATGAAGAAATCAAATCC
GGTTAATCCTTCAAAATTATTGTCTTCAACAGTCTTTAAACTGTAAATGCTTAAGATCAC
TATCAAATGAAATTTGAATTCCAAGAAAGCAATGCTTAATAACTTATGCACACCTAAAAT
GTAAGTGATGTATCCTGGAGTTTAATAAATGGAAGATCTTTTCATTTAATTGCAACATGT
GGTAAAGAAGGAGCCAGAATTTGGTACATGAAACAATTATCTACAAACTAAAATGTCATA
TAAGTTATTAAAGTTATTGACTTGTTTGATCAAAATTACAGAGAAAGCATTGAAGTCCAA
AAGATATCTTGGAATATTATGGCTTCACTAGTAGCAACCTCTGACAGCAACAACGAAATT
AAAATCTTTAAATGTGTCGGAATGGGTAAATGGGAAAAAATTAAGAGTATTAAAGAAACT
TAGGATTCAGAATAATGA

>TTHERM_00954180(protein)
MNQEGFQAINTFHQDIIHDISFDWYGQRLVTCSSDRNVKIWHKNQSGKWDLYHSITNQEG
PVRKVKWAHPQFGTILAACSMDRSIHIYQEYKDITSIQKDPNEQQLQKQWKPIKIYNDKE
VIEDMKFAPIHVGLILAVARADGRISIFQFKDLLNLQIHEQISNISVSPLGINSISWNKN
RFDKKHMIAVGCKDRDTSQTKNQNGINGVNQKYIDEEIKSGQSFKIIVFNSLQTVNAQDH
YQMKFEFQESNAQQLMHTQNVSDVSWSLINGRSFHLIATCGKEGARIWYMKQLSTNQNVI
QVIKVIDLFDQNYRESIEVQKISWNIMASLVATSDSNNEIKIFKCVGMGKWEKIKSIKET
QDSEQ

>TTHERM_00954180(gene)
AAATATTATTTTTGTTTGTAATTTGATATATAAATATTTAATAAATAATAATAATAGCAA
ATAAACATACAAAGCAATTAATTAATTAATTTTTGTATTTAAAAATTAAAAAATATAATA
GCGCAAAGTTAATAAATATATTAATAGATAGATATTTTACTTAATTTTCATTTTAAAAGC
TAGTCAGTCTCACTATAAAAAATGAATTAGGAAGGATTTCAAGCAATCAACACTTTTCAT
TAAGATATAATACACGATATATCATTTGACTGTAATTATTTATTTACATTAGCAATCAAA
CCAATTAAAAGTAGCAATAAAACAGCTAGAAAAACAAATTAATGCTTTTGAAATTAGCTT
ATTAAAGCACATATTTGATTCGATTTGAATGATAAATTTATCAAATAAAAATATTTCATG
AAAATGCAGATATTTTATCTAGACAAAGAGTAAATATACTTTTATAATCAAGCAATTCTT
CTCCTTAAAAGTATAAATAAAATTATTTAGCTGGCAGAGTGCTTAGTTTAAAAAATAAGG
ATTTGTTCAAAAAATAATTATTAAGATTATTAATCTCGCTTTAAGATTTATTGATGAATT
AACAAGCTAAATTCATAAAAGATAAAAAATTATTCAGGTATAGCTATATAGTTCTCCATG
ATATTAGGAGAGTATATCTTGAATACCCCATTTCTCTTTATCCCTCGTTTGACTCCACTT
CAACTATTTAAGTCATAGCGGCAACACTTAAGGGAATGAATTTTTTCTACACTTATTTTT
TTACTAATTAAATTAATTAAATAATTTTGTTAGTATGAATCAATCATAGCTAAAATCTTT
AGCAAGATATCTTATTAAATAAAGAAAAGCTAGCATTAATTAATTATCTTACCTAACATT
TATTTATAATCAATTCATAAAATCAATTAAATATCTTATGGGTTTGCTTTCTAATCAATT
TTTATTCACATTAACAAATAAACAAAAAAACAAACAAATAAATAAATAGAATCAAAAACT
TGATTTTTTTTATTCAAATTTTATTTATAAATGGTTTCTTATATTATTTTTAGTTTTTTT
AGCTGTTTTTGCAATTAATTTACAATAAAAAATTTAATTTTGGAATAAATTTATTTTAAA
ACAAATAAATTGTTTTAAACCTGAATGAATTTTAAATTTTATTTACTTATTTTTAAATTA
ATTAATTATTAATTTCTTTATTATTTTAATGCTTGATTAAAGGGTATGGTTAAAGACTAG
TCACTTGTTCATCTGACAGAAATGTAAAAATTTGGCATAAAAACTAATCAGGAAAATGGG
ATTTATACCACTCAATCACTAATCAAGAAGGTCCAGTTAGGAAAGTAAAATGGGCTCATC
CTTAATTTGGAACTATTTTGGCTGCATGCTCAATGGATCGCTCTATTCATATTTATTAAG
AATATAAAGATATTACTTCAATACAAAAGGATCCCAATGAATAATAATTATAAAGTAATT
TATTTTTCTTTTAAAGATTTAAATTAAAATTTTTTGTTTTAGAATAATGGAAACCCATCA
AAATCTATAACGACAAAGAAGTTATTGAAGACATGAAATTTGCTCCTATACATGTTGGTT
TAATATTAGCTGTTGCAAGAGCTGATGGAAGGATTAGTATTTTCCAATTTAAAGATCTTT
TGAACTTACAAATTCATGAGCAAATCTCGAATATCTCTGTCTCTCCTTTAGGAATTAATA
GTATTTCTTGGAACAAAAATAGATTTGATAAGAAGCATATGATTGCAGTCGGATGTAAAG
ATAGAGATACATCTCAAACTAAAAATTAAAATGGAATTAACGGCGTCAATTAAAAGTATA
TCGATGAAGAAATCAAATCCGGTTAATCCTTCAAAATTATTGTCTTCAACAGTCTTTAAA
CTGTAAATGCTTAAGATCACTATCAAATGAAATTTGAATTCCAAGAAAGCAATGCTTAAT
AACTTATGCACACCTAAAATGTAAGTGATGTATCCTGGAGTTTAATAAATGGAAGATCTT
TTCATTTAATTGCAACATGTGGTAAAGAAGGAGCCAGAATTTGGTACATGAAACAATTAT
CTACAAACTAAAATGTCATATAAGTTATTAAAGTTATTGACTTGTTTGATCAAAATTACA
GAGAAAGCATTGAAGTCCAAAAGATATCTTGGAATATTATGGCTTCACTAGTAGCAACCT
CTGACAGCAACAACGAAATTAAAATCTTTAAATGTGTCGGAATGGGTAAATGGGAAAAAA
TTAAGAGTATTAAAGAAACTTAGGATTCAGAATAATGA