Identifiers and Description

Gene Model Identifier

TTHERM_00241840

Standard Name

SAF5 (SWI/SNF-associated factor 5)

Aliases

PreTt18922 | 20.m00386 | 3706.m00150

Description

PHD-finger protein; PHD-finger containing protein. Member of the SWI/SNF complex.

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• zinc ion binding (IEA) | GO:0008270
• protein binding (IEA) | GO:0005515

Biological Process

• regulation of transcription, DNA-templated (IEA) | GO:0006355

Domains

• ( PF00628 ) PHD-finger
• ( PF03107 ) DC1 domain
• ( PF07649 ) C1-like domain
• ( PF08792 ) A2L zinc ribbon domain
• ( PF00130 ) Phorbol esters/diacylglycerol binding domain (C1

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 19%

TetraMine Data

TTHERM_00241840

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_07810.1	1.0003491030231826e-151	PHD-finger family protein (601 aa)
Oxytricha	Contig14802.0.g27	1.0002335610448659e-38	PHD-finger
WormBase	WBGene00011729	2.000769134519826e-18	locus:set-16 status:Partiall y_confirmed UniProt:G5EGI1 protein_id:CAB03348.3
DictyBase	DDB_G0272064	0.00000000009998509410508463	DDB_G0272064 on chromosome: 2 position 1150556 to 1158821
SGD	YJR119C	0.000000019990673443141236	JHD2 JmjC domain family histon e demethylase specific for H3- K4 (histone H3 Lys4); removes methyl groups specifically add ed by Set1p methyltransferase; protein levels regulated by N ot4p (E3 ubiquitin ligase) pol yubiquitin-mediated degradatio n

General Information

No Data fetched for General Information

Associated Literature

1. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences

>TTHERM_00241840(coding)
ATGTAGAAACTCTTAAAATATATCTGCTTATTTATTGTAAACTATTAACTTTCATCTTTT
ATTACTAATAATTTTCTACATTTTCTGTCGCTATATAAAAATTTATTAAATAAAAAGCAA
AGCGAGCGCAGGTTAAGAAATTTAAATAATAAATTCTTAATTTAATTAGATCAAATAAAC
ATATATTTATTATTTTTAGTTAGTTTTCTTTTAGAAAGAAAGAAATTTTTTACGCACGTT
GATTAAATGTTGAATAAATTTGTTCTGGATAAACAAACAGATAGAAATTTCAGTCCGTTT
GATAAATACATTTTTGAGTAATTGCATTTAAATTCTAATAAAATTAATCCCTTTCACACA
GATTGCAAATTTACAAAGAGAAGAGTATGCTATTGCAACTATCATAATAGCTCTTTAATA
GAGCAAAGATCATAAGAGTTAAACGAAGCAGTAAATAGATATTTAAAGGTTGACTATAGT
GGAGCTACAAAGCAAGATTTAAAGAGGTCACTCATAAATAGATAGCTCGCTTAAGAAAAA
GTTAAAAGGTTATAGGATTTAGAAGATTTATTTTACATGGCACCAAAATATGAAAAGTAC
GTTGAAGCTTAAAAAGAAGAGGAAAATGCAATCTTAAGAGAATAAATCATTTAGGAATAA
AAGAACATGATCATTAATGGGCAGTGCTACTATTGTCAAACTACTCATTCAAATAAATTT
TATGAGATAAGTCCTAATCCTGCTGAGACTGTCGTTATCTGTGAAGAATGCGCAATTTCT
AATCATCCTGAAGTAGTTACTTACAATAACAAGCCTGCTTAAAAGCCTGAAAATCTTATC
GAAAAGAAAAAAAAGAGGCAAGAAGCTCAAGCTAAAAGATTACAAACTCTTCAAGCAAAG
AAATTACTCAAAATGGGTACCTTGGATTAAAATTCTAATAAGCAAAATAAATAAGGAAAT
GAAAAAAGCACAACAAAGCTTGACAAAGAAGATGACGAAGATGAAAGTGACATTTCAGAA
ACTTAAAAAGAATGCAATTGGGAAAAATGCAAAAAGAAAAATAAAAGTGATCCTGAAGAC
ATTCTTGTTTGCAAAAATTGCAACAAGAGCTTTCATGCTGAGTGCTGCGATCCTCCTCTT
GAAAAGGGAATAGTTTCAAAGTACGATTGGTTTTGTACAGAATGCAAGCTATGTATTGCT
TGTAACAAAAACACTAAAGAAAATGAATTGCTTATGTGCGACTGTTGTGATAGACCATTC
CACATGAGCTGTTTGGAACCAGCAAGAACTGATATTCCAGAAGGTAGATGGTTTTGTAAA
GATTGTGAAAAATGTCCATGCTGTGGAGTTCTCTTATTCTAAAATTATTCAAGAGAACTG
CTTAAGTAGTATTCAAAATAATAAGTGGATAATAAAATAATATGTAAAGATTGTTGGGTA
TACTACCAATAAAAAAAATACTGTCCTATTTGCTTCAAAATAATAGAAGAAAATGCGGAA
GGCTAGTTTGTGTATTGTGATAAATGTGAATTATGGCTACATTACGAGTGTGAAAAGAAG
CTTAGCAACAGATCCTTTAGAGAAATTAACAGATCAAAATAGTTTTGTTGTAGTAAATGT
AAGGTTATTGAAGACAGTAAGTAAAAATGA

>TTHERM_00241840(protein)
MQKLLKYICLFIVNYQLSSFITNNFLHFLSLYKNLLNKKQSERRLRNLNNKFLIQLDQIN
IYLLFLVSFLLERKKFFTHVDQMLNKFVLDKQTDRNFSPFDKYIFEQLHLNSNKINPFHT
DCKFTKRRVCYCNYHNSSLIEQRSQELNEAVNRYLKVDYSGATKQDLKRSLINRQLAQEK
VKRLQDLEDLFYMAPKYEKYVEAQKEEENAILREQIIQEQKNMIINGQCYYCQTTHSNKF
YEISPNPAETVVICEECAISNHPEVVTYNNKPAQKPENLIEKKKKRQEAQAKRLQTLQAK
KLLKMGTLDQNSNKQNKQGNEKSTTKLDKEDDEDESDISETQKECNWEKCKKKNKSDPED
ILVCKNCNKSFHAECCDPPLEKGIVSKYDWFCTECKLCIACNKNTKENELLMCDCCDRPF
HMSCLEPARTDIPEGRWFCKDCEKCPCCGVLLFQNYSRELLKQYSKQQVDNKIICKDCWV
YYQQKKYCPICFKIIEENAEGQFVYCDKCELWLHYECEKKLSNRSFREINRSKQFCCSKC
KVIEDSKQK

>TTHERM_00241840(gene)
ATGTAGAAACTCTTAAAATATATCTGCTTATTTATTGTAAACTATTAACTTTCATCTTTT
ATTACTAATAATTTTCTACATTTTCTGTCGCTATATAAAAATTTATTAAATAAAAAGCAA
AGCGAGCGCAGGTTAAGAAATTTAAATAATAAATTCTTAATTTAATTAGATCAAATAAAC
ATATATTTATTATTTTTAGTTAGTTTTCTTTTAGAAAGAAAGAAGTAAAAAAGCTTGTTT
TAAATTAGTTTATCAAATTAATAAAAAATAGATTTTTTACGCACGTTGATTAAATGTTGA
ATAAATTTGTTCTGGATAAACAAACAGATAGAAATTTCAGTCCGTTTGATAAATACATTT
TTGAGTAATTGCATTTAAATTCTAATAAAATTAATCCCTTTCACACAGGTAATTTGAGAA
ATAATATCATTTTAAGATATAAAGAGGTGACTTTTGGTAATAAATTCTATTTTTTTAACA
AGATTGCAAATTTACAAAGAGAAGAGTATGCTATTGCAACTATCATAATAGCTCTTTAAT
AGAGCAAAGAGTAAGAATGAAATTTATTACTAAATAAATATTTAAAAAATGTATTTTACT
ATCTATTAATAGTCATAAGAGTTAAACGAAGCAGTAAATAGATATTTAAAGGTTGACTAT
AGTGGAGCTACAAAGCAAGATTTAAAGAGGTCACTCATAAATGTATTATTATTTCTATAG
ATGCAATAAATATAACTAGATTTATAATATTAGAGATAGCTCGCTTAAGAAAAAGTTAAA
AGGTTATAGGATTTAGAAGATTTATTTTACATGGCACCAAAATATGAAAAGTACGTTGAA
GCTTAAAAAGAAGAGGAAAATGCAATCTTAAGAGAATAAATCATTTAGGAATAAAAGAAC
ATGATCATTAATGGGCAGTGCTACTATTGTCAAACTACTCATTCAAATAAATTTTATGAG
ATAAGTCCTGTAATATTTTTTAGATCCTTTAATGAAATAAATATTTAGTTTGGCGGAACA
AAATGCTTGATAAAAATAGATAGAATTTAATAATGAATGTTTTAATTAGAATTTTAATTT
ATAAAATGATTAAATAACAATTTGAAATGCATATCTTTTTAATTAAAATACTGATAGAAT
CCTGCTGAGACTGTCGTTATCTGTGAAGAATGCGCAATTTCTAATCATCCTGAAGTAGTT
ACTTACAATAAGTAATTTATATCAAATATATTTATTAAACTGTCTCACTCTTCTCAATAT
TTTTTTATTATAATTTTAGCAAGCCTGCTTAAAAGCCTGAAAATCTTATCGAAAAGAAAA
AAAAGAGGCAAGAAGCTCAAGCTAAAAGATTACAAACTCTTCAAGCAAAGAAATTACTCA
AAATGGGTACCTTGGATTAAAATTCTAATAAGCAAAATAAATAAGGAAATGAAAAAGTAA
TTAATTAATTTTCCATATTTAGCAAATCAGTATATAAATTAAATATATTTTTAGAGCACA
ACAAAGCTTGACAAAGAAGATGACGAAGATGAAAGTGACATTTCAGAAACTTAAAAAGAA
TGCAATTGGGAAAAATGCAAAAAGAAAAATAAAAGTGATCCTGAAGACATTCTTGTTTGC
AAAAATTGCAACAAGAGCTTTCATGCTGAGTGCTGCGATCCTCCTCTTGAAAAGGGAATA
GTTTCAAAGTACGATTGGTTTTGTACAGAATGCAAGCTATGTATTGCTTGTAACAAAAAC
ACTAAAGTAAATGAAAATAAATTTAATATTCACTTATTTATTTAATTTTGTTAAGATTGA
TTCAAATTATTTTAATCACATTAAGCAAGCAAATTTAAATTTCCCCAAAAAATATTTTAG
GAAAATGAATTGCTTATGTGCGACTGTTGTGATAGACCATTCCACATGAGCTGTTTGGAA
CCAGCAAGAACTGATATTCCAGAAGGTAGATGGTTTTGTAAAGATTGTGAAAAATGTCCA
TGCTGTGGAGTTCTCTTATTCTAAAATTATTCAAGAGAACTGCTTAAGTAGTATTCAAAA
TAATAAGTGGATAATAAAATAATATGTAAAGATTGTTGGGTATACTACCAATAAGTAATT
CTTTAAATAAAATTTTCAAAAAATTATCTTTATTTACCCAAATATAAATAGAAAAAATAC
TGTCCTATTTGCTTCAAAATAATAGAAGAAAATGCGGAAGGCTAGTTTGTGTATTGTGAT
AAATGTGAATTATGTAAATTTAAAATAGATTTTTAATAATAATAGTTTTTAAAATGCCAT
TTTTCAATAATTTAAAATAGGGCTACATTACGAGTGTGAAAAGAAGCTTAGCAACAGATC
CTTTAGAGAAATTAACAGATCAAAATAGTTTTGTTGTAGTAAATGTAAGGTTATTGAAGA
CAGTAAGTAAAAATGA