Identifiers and Description
Gene Model Identifier
TTHERM_00241840Standard Name
SAF5 (SWI/SNF-associated factor 5)Aliases
PreTt18922 | 20.m00386 | 3706.m00150Description
PHD-finger protein; PHD-finger containing protein. Member of the SWI/SNF complex.Genome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Molecular Function
- zinc ion binding (IEA) | GO:0008270
- protein binding (IEA) | GO:0005515
Biological Process
- regulation of transcription, DNA-templated (IEA) | GO:0006355
Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 19%
TetraMine Data
TTHERM_00241840
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_07810.1 1.0003491030231826e-151 PHD-finger family protein (601
aa)
Oxytricha Contig14802.0.g27 1.0002335610448659e-38 PHD-finger
WormBase WBGene00011729 2.000769134519826e-18 locus:set-16 status:Partiall
y_confirmed UniProt:G5EGI1
protein_id:CAB03348.3
DictyBase DDB_G0272064 0.00000000009998509410508463 DDB_G0272064 on chromosome: 2
position 1150556 to 1158821
SGD YJR119C 0.000000019990673443141236 JHD2 JmjC domain family histon
e demethylase specific for H3-
K4 (histone H3 Lys4); removes
methyl groups specifically add
ed by Set1p methyltransferase;
protein levels regulated by N
ot4p (E3 ubiquitin ligase) pol
yubiquitin-mediated degradatio
n
General Information
No Data fetched for General Information
Associated Literature
- Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10
Sequences
>TTHERM_00241840(coding)
ATGTAGAAACTCTTAAAATATATCTGCTTATTTATTGTAAACTATTAACTTTCATCTTTT
ATTACTAATAATTTTCTACATTTTCTGTCGCTATATAAAAATTTATTAAATAAAAAGCAA
AGCGAGCGCAGGTTAAGAAATTTAAATAATAAATTCTTAATTTAATTAGATCAAATAAAC
ATATATTTATTATTTTTAGTTAGTTTTCTTTTAGAAAGAAAGAAATTTTTTACGCACGTT
GATTAAATGTTGAATAAATTTGTTCTGGATAAACAAACAGATAGAAATTTCAGTCCGTTT
GATAAATACATTTTTGAGTAATTGCATTTAAATTCTAATAAAATTAATCCCTTTCACACA
GATTGCAAATTTACAAAGAGAAGAGTATGCTATTGCAACTATCATAATAGCTCTTTAATA
GAGCAAAGATCATAAGAGTTAAACGAAGCAGTAAATAGATATTTAAAGGTTGACTATAGT
GGAGCTACAAAGCAAGATTTAAAGAGGTCACTCATAAATAGATAGCTCGCTTAAGAAAAA
GTTAAAAGGTTATAGGATTTAGAAGATTTATTTTACATGGCACCAAAATATGAAAAGTAC
GTTGAAGCTTAAAAAGAAGAGGAAAATGCAATCTTAAGAGAATAAATCATTTAGGAATAA
AAGAACATGATCATTAATGGGCAGTGCTACTATTGTCAAACTACTCATTCAAATAAATTT
TATGAGATAAGTCCTAATCCTGCTGAGACTGTCGTTATCTGTGAAGAATGCGCAATTTCT
AATCATCCTGAAGTAGTTACTTACAATAACAAGCCTGCTTAAAAGCCTGAAAATCTTATC
GAAAAGAAAAAAAAGAGGCAAGAAGCTCAAGCTAAAAGATTACAAACTCTTCAAGCAAAG
AAATTACTCAAAATGGGTACCTTGGATTAAAATTCTAATAAGCAAAATAAATAAGGAAAT
GAAAAAAGCACAACAAAGCTTGACAAAGAAGATGACGAAGATGAAAGTGACATTTCAGAA
ACTTAAAAAGAATGCAATTGGGAAAAATGCAAAAAGAAAAATAAAAGTGATCCTGAAGAC
ATTCTTGTTTGCAAAAATTGCAACAAGAGCTTTCATGCTGAGTGCTGCGATCCTCCTCTT
GAAAAGGGAATAGTTTCAAAGTACGATTGGTTTTGTACAGAATGCAAGCTATGTATTGCT
TGTAACAAAAACACTAAAGAAAATGAATTGCTTATGTGCGACTGTTGTGATAGACCATTC
CACATGAGCTGTTTGGAACCAGCAAGAACTGATATTCCAGAAGGTAGATGGTTTTGTAAA
GATTGTGAAAAATGTCCATGCTGTGGAGTTCTCTTATTCTAAAATTATTCAAGAGAACTG
CTTAAGTAGTATTCAAAATAATAAGTGGATAATAAAATAATATGTAAAGATTGTTGGGTA
TACTACCAATAAAAAAAATACTGTCCTATTTGCTTCAAAATAATAGAAGAAAATGCGGAA
GGCTAGTTTGTGTATTGTGATAAATGTGAATTATGGCTACATTACGAGTGTGAAAAGAAG
CTTAGCAACAGATCCTTTAGAGAAATTAACAGATCAAAATAGTTTTGTTGTAGTAAATGT
AAGGTTATTGAAGACAGTAAGTAAAAATGA>TTHERM_00241840(protein)
MQKLLKYICLFIVNYQLSSFITNNFLHFLSLYKNLLNKKQSERRLRNLNNKFLIQLDQIN
IYLLFLVSFLLERKKFFTHVDQMLNKFVLDKQTDRNFSPFDKYIFEQLHLNSNKINPFHT
DCKFTKRRVCYCNYHNSSLIEQRSQELNEAVNRYLKVDYSGATKQDLKRSLINRQLAQEK
VKRLQDLEDLFYMAPKYEKYVEAQKEEENAILREQIIQEQKNMIINGQCYYCQTTHSNKF
YEISPNPAETVVICEECAISNHPEVVTYNNKPAQKPENLIEKKKKRQEAQAKRLQTLQAK
KLLKMGTLDQNSNKQNKQGNEKSTTKLDKEDDEDESDISETQKECNWEKCKKKNKSDPED
ILVCKNCNKSFHAECCDPPLEKGIVSKYDWFCTECKLCIACNKNTKENELLMCDCCDRPF
HMSCLEPARTDIPEGRWFCKDCEKCPCCGVLLFQNYSRELLKQYSKQQVDNKIICKDCWV
YYQQKKYCPICFKIIEENAEGQFVYCDKCELWLHYECEKKLSNRSFREINRSKQFCCSKC
KVIEDSKQK>TTHERM_00241840(gene)
ATGTAGAAACTCTTAAAATATATCTGCTTATTTATTGTAAACTATTAACTTTCATCTTTT
ATTACTAATAATTTTCTACATTTTCTGTCGCTATATAAAAATTTATTAAATAAAAAGCAA
AGCGAGCGCAGGTTAAGAAATTTAAATAATAAATTCTTAATTTAATTAGATCAAATAAAC
ATATATTTATTATTTTTAGTTAGTTTTCTTTTAGAAAGAAAGAAGTAAAAAAGCTTGTTT
TAAATTAGTTTATCAAATTAATAAAAAATAGATTTTTTACGCACGTTGATTAAATGTTGA
ATAAATTTGTTCTGGATAAACAAACAGATAGAAATTTCAGTCCGTTTGATAAATACATTT
TTGAGTAATTGCATTTAAATTCTAATAAAATTAATCCCTTTCACACAGGTAATTTGAGAA
ATAATATCATTTTAAGATATAAAGAGGTGACTTTTGGTAATAAATTCTATTTTTTTAACA
AGATTGCAAATTTACAAAGAGAAGAGTATGCTATTGCAACTATCATAATAGCTCTTTAAT
AGAGCAAAGAGTAAGAATGAAATTTATTACTAAATAAATATTTAAAAAATGTATTTTACT
ATCTATTAATAGTCATAAGAGTTAAACGAAGCAGTAAATAGATATTTAAAGGTTGACTAT
AGTGGAGCTACAAAGCAAGATTTAAAGAGGTCACTCATAAATGTATTATTATTTCTATAG
ATGCAATAAATATAACTAGATTTATAATATTAGAGATAGCTCGCTTAAGAAAAAGTTAAA
AGGTTATAGGATTTAGAAGATTTATTTTACATGGCACCAAAATATGAAAAGTACGTTGAA
GCTTAAAAAGAAGAGGAAAATGCAATCTTAAGAGAATAAATCATTTAGGAATAAAAGAAC
ATGATCATTAATGGGCAGTGCTACTATTGTCAAACTACTCATTCAAATAAATTTTATGAG
ATAAGTCCTGTAATATTTTTTAGATCCTTTAATGAAATAAATATTTAGTTTGGCGGAACA
AAATGCTTGATAAAAATAGATAGAATTTAATAATGAATGTTTTAATTAGAATTTTAATTT
ATAAAATGATTAAATAACAATTTGAAATGCATATCTTTTTAATTAAAATACTGATAGAAT
CCTGCTGAGACTGTCGTTATCTGTGAAGAATGCGCAATTTCTAATCATCCTGAAGTAGTT
ACTTACAATAAGTAATTTATATCAAATATATTTATTAAACTGTCTCACTCTTCTCAATAT
TTTTTTATTATAATTTTAGCAAGCCTGCTTAAAAGCCTGAAAATCTTATCGAAAAGAAAA
AAAAGAGGCAAGAAGCTCAAGCTAAAAGATTACAAACTCTTCAAGCAAAGAAATTACTCA
AAATGGGTACCTTGGATTAAAATTCTAATAAGCAAAATAAATAAGGAAATGAAAAAGTAA
TTAATTAATTTTCCATATTTAGCAAATCAGTATATAAATTAAATATATTTTTAGAGCACA
ACAAAGCTTGACAAAGAAGATGACGAAGATGAAAGTGACATTTCAGAAACTTAAAAAGAA
TGCAATTGGGAAAAATGCAAAAAGAAAAATAAAAGTGATCCTGAAGACATTCTTGTTTGC
AAAAATTGCAACAAGAGCTTTCATGCTGAGTGCTGCGATCCTCCTCTTGAAAAGGGAATA
GTTTCAAAGTACGATTGGTTTTGTACAGAATGCAAGCTATGTATTGCTTGTAACAAAAAC
ACTAAAGTAAATGAAAATAAATTTAATATTCACTTATTTATTTAATTTTGTTAAGATTGA
TTCAAATTATTTTAATCACATTAAGCAAGCAAATTTAAATTTCCCCAAAAAATATTTTAG
GAAAATGAATTGCTTATGTGCGACTGTTGTGATAGACCATTCCACATGAGCTGTTTGGAA
CCAGCAAGAACTGATATTCCAGAAGGTAGATGGTTTTGTAAAGATTGTGAAAAATGTCCA
TGCTGTGGAGTTCTCTTATTCTAAAATTATTCAAGAGAACTGCTTAAGTAGTATTCAAAA
TAATAAGTGGATAATAAAATAATATGTAAAGATTGTTGGGTATACTACCAATAAGTAATT
CTTTAAATAAAATTTTCAAAAAATTATCTTTATTTACCCAAATATAAATAGAAAAAATAC
TGTCCTATTTGCTTCAAAATAATAGAAGAAAATGCGGAAGGCTAGTTTGTGTATTGTGAT
AAATGTGAATTATGTAAATTTAAAATAGATTTTTAATAATAATAGTTTTTAAAATGCCAT
TTTTCAATAATTTAAAATAGGGCTACATTACGAGTGTGAAAAGAAGCTTAGCAACAGATC
CTTTAGAGAAATTAACAGATCAAAATAGTTTTGTTGTAGTAAATGTAAGGTTATTGAAGA
CAGTAAGTAAAAATGA