Identifiers and Description
Gene Model Identifier
TTHERM_00630430Standard Name
RRP62 (exosome component RRP6-2)Aliases
PreTt06556 | 89.m00150 | 3831.m01451Description
RRP62 3-prime-5-prime exonucleaseGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Cellular Component
- intracellular (IEA) | GO:0005622
Molecular Function
- 3'-5' exonuclease activity (IEA) | GO:0008408
- nucleic acid binding (IEA) | GO:0003676
Biological Process
- nucleobase-containing compound metabolic process (IEA) | GO:0006139
Domains
No Data fetched for Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 9.7%
TetraMine Data
TTHERM_00630430
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_04330.1 9.997093137033517e-262 3-5 exonuclease (729 aa)
Oxytricha Contig8740.0.1.g10 1.9998745702418095e-48 3-5 exonuclease
Stentor Coeruleus SteCoe_7112 8.985825944049381e-37 DictyBase DDB_G0278593 3.000842737734004e-34 exdl2B on chromosome: 3 positi
on 240471 to 242531
SGD YOR001W 4.998021988471165e-24 RRP6 Nuclear exosome exonuclea
se component; has 3-5 exonucle
ase activity; involved in RNA
processing, maturation, survei
llance, degradation, tethering
, and export; has similarity t
o E. coli RNase D and to human
PM-Sc1 100 (EXOSC10); mutant
displays reduced transcription
elongation in the G-less-base
d run-on (GLRO) assay
WormBase WBGene00000796 8.000124778438792e-23 locus:crn-3 status:Confirmed
UniProt:G5EBX6 protein_id
:CAA90108.1
General Information
No Data fetched for General Information
Associated Literature
No Data fetched for Associated Literature
Sequences
>TTHERM_00630430(coding)
ATGAAAAATTACACAATTAAAGAGTTTTAACAATATAATCACAGTGTATTAAATCCCTTT
TAGCCTGAAAAGTATATTTTGATAGATACTTTAAATAAGCTGCAGGATTTAATTCCAATA
CTTTTAGAATAAACTAGGTTAGGAATAGATACAGAATAGAGCTTTGCCAAGACCTATGAA
GGATTTTTATGCTTGATACAAATTTCAACTGATTAAAATGACTATCTGATAGATGTTTTA
GGCATCAACAGCAAATAAGGAATTAATGAGTGTCTTTCTAAAGTTTTTTTGTGCAAAGAC
ATTATTAAAATTTTTTATGCTGGATAATAAGATATTTTATGGCTTAAGAGAGATTTTGAT
TTATCAGTAGTAAATTACTTCGATGTAAAAGAATGTGCAAGCTTCCTAAAAAAATCTGAT
GATAATTCACTTATTTAGCTGATTGATCGCTATTGCAATTACAAATTAGATAAGCAAAAG
AAAAAAGAGCTATAAGTTTCAGAGTGGTCAAATAGACCTTTAAGCAAAGAATAGTTAGAC
TATGCTGCTTTGGATTCTCATTACTTAATAAAAATTAGATATGAACTGTTGTGTGAGACT
ATATAAAGTGTCGGTTTTAAGAGAACTATTGAAGTCATTAACTAAATGCAGTAATAAACT
TTAAAGAAATATGAAAAGAAGAAGTTTGATTATTAGTACTTTTTTGATTTATTTTAGAAA
TAATTTAAGCATTAAGAGTTATATGCATCATAAATTGACAAGTAATCAGAAGTATACAGA
ATAATAAACGTAATATATTGTAGAATAGCCAAACTTAAAAATGAATATTCATAATTAAAT
AACTTAAATGCTAATAATTTGTTATTGGAACCTTCGCTTTTAGAACTAGCTTTTAAAATT
TATGATTTAAACAGTAATAAACTTGCTTTGTTGGAAGATTTAGACTTATAAACATTCTAA
AATATCAAATATCCCCAATCGCTTATATTTTTGTAAAGCTAAAGGGAGAAAATCATGTTA
ATTTTGAATTCATGGAATTAGAGTGAAGAAAAAAACAATTTATTATAAGAGTATGATAAA
TATGGATAAAAAAAGGCTAGCAGTCACACTGAAAAAGAAGAAAGGAAGCAGAAGAGAGCA
TAATAATTTGAGGAGTAGTTCTGCTTGAAAAAAGAACCATACGGAAATTGCTAAATTCTA
TCACCACTAGGTTTGAAACTTTGCAATTGTGATGAAAAAAAAGTTAAATGGTATCTCAAT
AAAGGACTAGCTACTTTAGTCAGTAGAGAGCCTTACACAATTATAAAATTAAATTTTTAG
CCTAATGGAAAGAATCATGAAGAATTAGAACAAGAAATTCATTTGAATGAAAACCAATTT
TATGCAAGCAAGAGAGAAACTGTTTGTGTAGTCTGTGGAAAAGATGAAAAATTCACTAAA
TATCATGTTATTCCCTCTATATACAGAACTCATTTTCCAAATAAATACAAAAGCCATAGA
TCTCATGACATTTTGTTATTATGTGTGAAATGTCACCAGAAAGCAGGAAAAAACGCAGAT
TTGTTAAAAGATTAACTATTGCAGTAATATAAAATAGAAAAACAGCAGTATTTTAAATAG
CAAAGCTTAAAATATATGGCTTAAAGAATGTATGCTAGTACTAAGTCATACTTAAAAAGC
AAAGAAAAAATGAATAAAGAAAATAGATAAAAGTGTAAAGAAAACATTAGACAATATTTC
GACGAATTGCTCAAAACACCTGATATTTAAAATAAGTTTCCTTAGTTAAAGGACAAACAA
TTTAAAGTCTCAACCACTGGAAAAATTAAAATTGATGAAGAATTTAGGAGTTTCTTTTCT
AATTTAGAAAAAGACTCTAAAAATATTAAAGATGAAGAAAAACAAAATGAGAGAATTTGG
GCTGGATAAAAAGTAGTTGAAAATTTGAAAACAGAAGATGACATTATTTTATTCATAAAA
ATGTGGAGACAGCACTTTTTAGATGTTATGCAACCAAAATATTTACCATTTGGATGGAAT
GTCAATCATAAATTTACAAGAGATTTTGGTAAAGAGTCTGTTTTCAATTAAATTGAAGGT
AATCAAACAGAAGATATCTCCTAACAAAGCCATATAACTGTTTCTGAAGGAATAAATTAG
CAACCATGA>TTHERM_00630430(protein)
MKNYTIKEFQQYNHSVLNPFQPEKYILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYE
GFLCLIQISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFD
LSVVNYFDVKECASFLKKSDDNSLIQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLD
YAALDSHYLIKIRYELLCETIQSVGFKRTIEVINQMQQQTLKKYEKKKFDYQYFFDLFQK
QFKHQELYASQIDKQSEVYRIINVIYCRIAKLKNEYSQLNNLNANNLLLEPSLLELAFKI
YDLNSNKLALLEDLDLQTFQNIKYPQSLIFLQSQREKIMLILNSWNQSEEKNNLLQEYDK
YGQKKASSHTEKEERKQKRAQQFEEQFCLKKEPYGNCQILSPLGLKLCNCDEKKVKWYLN
KGLATLVSREPYTIIKLNFQPNGKNHEELEQEIHLNENQFYASKRETVCVVCGKDEKFTK
YHVIPSIYRTHFPNKYKSHRSHDILLLCVKCHQKAGKNADLLKDQLLQQYKIEKQQYFKQ
QSLKYMAQRMYASTKSYLKSKEKMNKENRQKCKENIRQYFDELLKTPDIQNKFPQLKDKQ
FKVSTTGKIKIDEEFRSFFSNLEKDSKNIKDEEKQNERIWAGQKVVENLKTEDDIILFIK
MWRQHFLDVMQPKYLPFGWNVNHKFTRDFGKESVFNQIEGNQTEDISQQSHITVSEGINQ
QP>TTHERM_00630430(gene)
ATGAAAAATTACACAATTAAAGAGTTTTAACAATATAATCACAGTGTATTAAATCCCTTT
TAGCCTGAAAAGTATATTTTGATAGATACTTTAAATAAGCTGCAGGATTTAATTCCAATA
CTTTTAGAATAAACTAGGTTAGGTAACTTTTCAAATTTATTTATTTTTACATTGTTTATG
TAAATTATTTATAATATACAGGAATAGATACAGAATAGAGCTTTGCCAAGACCTATGAAG
GATTTTTATGCTTGATACAAATTTCAACTGATTAAAATGACTATCTGATAGATGTTTTAG
GCATCAACAGCAAATAAGGAATTAATGAGTGTCTTTCTAAAGTTTTTTTGTGCAAAGACA
TTATTAAAATTTTTTATGCTGGATAATAAGATATTTTATGGCTTAAGAGAGATTTTGATT
TATCAGTAGTAAATTACTTCGATGTAAAAGAATGTGCAAGCTTCCTAAAAAAATCTGATG
ATAATTCACTTATTTAGCTGATTGATCGCTATTGCAATTACAAATTAGATAAGCAAAAGA
AAAAAGAGCTATAAGTAAATAAATCAGTATTTATTTATATATATTTTTATTTTATTTATT
TTCCAAAAGGTTTCAGAGTGGTCAAATAGACCTTTAAGCAAAGAATAGTTAGACTATGCT
GCTTTGGATTCTCATTACTTAATAAAAATTAGATATGAACTGTTGTGTGAGACTATATAA
AGTGTCGGTTTTAAGAGAACTATTGAAGTCATTAACTAAATGCAGTAATAAACTTTAAAG
AAATATGAAAAGAAGAAGTTTGATTATTAGTACTTTTTTGATTTATTTTAGAAATAATTT
AAGCATTAAGAGTTATATGCATCATAAATTGACAAGTAATCAGAAGTATACAGAATAATA
AACGTAATATATTGTAGAATAGCCAAACTTAAAAATGAATATTCATAATTAAATAACTTA
AATGCTAATAATTTGTTATTGGAACCTTCGCTTTTAGAACTAGCTTTTAAAATTTATGAT
TTAAACAGTAATAAACTTGCTTTGTTGGAAGATTTAGACTTATAAACATTCTAAAATATC
AAATATCCCCAATCGCTTATATTTTTGTAAAGCTAAAGGGAGAAAATCATGTTAATTTTG
AATTCATGGAATTAGAGTGAAGAAAAAAACAATTTATTATAAGAGTATGATAAATATGGA
TAAAAAAAGGCTAGCAGTCACACTGAAAAAGAAGAAAGGAAGCAGAAGAGAGCATAATAA
TTTGAGGAGTAGTTCTGCTTGAAAAAAGAACCATACGGAAATTGCTAAATTCTATCACCA
CTAGGTTTGAAACTTTGCAATTGTGATGAAAAAAAAGTTAAATGGTATCTCAATAAAGGA
CTAGCTACTTTAGTCAGTAGAGAGCCTTACACAATTATAAAATTAAATTTTTAGCCTAAT
GGAAAGAATCATGAAGAATTAGAACAAGAAATTCATTTGAATGAAAACCAATTTTATGCA
AGCAAGAGAGAAACTGTTTGTGTAGTCTGTGGAAAAGATGAAAAATTCACTAAATATCAT
GTTATTCCCTCTATATACAGAACTCATTTTCCAAATAAGTAAATTTCATTTCCTTTCTCA
TAAAATATAAAATAGTTCGATGCATTAAAATAAAATTAAATAGATACAAAAGCCATAGAT
CTCATGACATTTTGTTATTATGTGTGAAATGTCACCAGAAAGCAGGAAAAAACGCAGATT
TGTTAAAAGATTAACTATTGCAGTAATATAAAATAGAAAAACAGCAGTATTTTAAATAGC
AAAGCTTAAAATATATGGCTTAAAGAATGTATGCTAGTACTAAGTCATACTTAAAAAGCA
AAGAAAAAATGAATAAAGAAAATAGATAAAAGTGTAAAGAAAACATTAGACAATATTTCG
ACGAATTGCTCAAAACACCTGATATTTAAAATAAGTTTCCTTAGTTAAAGGACAAACAAT
TTAAAGTCTCAACCACTGGAAAAATTAAAATTGATGAAGAATTTAGGAGTTTCTTTTCTA
ATTTAGAAAAAGACTCTAAAAATATTAAAGATGAAGAAAAACAAAATGAGAGAATTTGGG
CTGGATAAAAAGTAGTTGAAAATTTGAAAACAGAAGATGACATTATTTTATTCATAAAAA
TGTGGAGACAGCACTTTTTAGATGTTATGCAACCAAAATATTTACCATTTGGATGGAATG
TCAATCATAAATTTACAAGAGATTTTGGTAAAGAGTCTGTTTTCAATTAAATTGAAGGTA
ATCAAACAGAAGATATCTCCTAACAAAGCCATATAACTGTTTCTGAAGGAATAAATTAGC
AACCATGA