Identifiers and Description

Gene Model Identifier

TTHERM_00463370

Standard Name

RRP61 (exosome component RRP6-1)

Aliases

PreTt25789 | 54.m00245 | 3823.m01156

Description

3'-5' exonuclease family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• 3'-5' exonuclease activity (IEA) | GO:0008408
• nucleic acid binding (IEA) | GO:0003676

Biological Process

• nucleobase-containing compound metabolic process (IEA) | GO:0006139

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.5%

TetraMine Data

TTHERM_00463370

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_10720.1	2.0000211193600847e-137	3-5 exonuclease (1301 aa)
SGD	YOR001W	5.998760051700188e-30	RRP6 Nuclear exosome exonuclea se component; has 3-5 exonucle ase activity; involved in RNA processing, maturation, survei llance, degradation, tethering , and export; has similarity t o E. coli RNase D and to human PM-Sc1 100 (EXOSC10); mutant displays reduced transcription elongation in the G-less-base d run-on (GLRO) assay
DictyBase	DDB_G0271572	3.0000451088882257e-25	exosc10 on chromosome: 2 posit ion 601251 to 605014
WormBase	WBGene00000796	8.00344477495519e-22	locus:crn-3 status:Confirmed UniProt:G5EBX6 protein_id :CAA90108.1
Oxytricha	Contig14024.0.g55	9.997019043202629e-21	3-5 exonuclease
Stentor Coeruleus	SteCoe_17151	0.00000000003775134544279098

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00463370(coding)
ATGAAAAATCCATTTGACAGCAATAAATATTTTATGAACGAGAATTTAAATTTGGCTTTT
GAAAATATTTCAAAGCCTCAGCTGTTATTTAACGATAGCTATTTTACTGTCAGTAACAAT
ACTTAGTTGTAGAACCAATCGCAAGGCTAGCTTGTTGAAAAAATTAAAGCAATATAAAAC
AATATCATTCCTTACAACGAAATAAGATTCTTTTAAAATCTAAGAAACATACAAGCATGT
TTTACTTTTGACTTCGATAAAGACCAATCCAAATCATTGTACATTAAAACAGACTAAGAA
TTTAACAGAATGTTAGAGCTCTTGAGAAATGCTGGAGTCATATGCTGGGATGTGCATTTC
AATACTTACAGAAGTTTCTATGGTTTTGTTTGCTTTCTAGAAATTAGTACAATTGATCAA
GATTATATCATAGATTGCTTAAGTTTGAGAAATGAAATACATAGATTAAAGGAAATCTTT
TTGGATAAGTAGATTGTTAAAATAACTTTGGATTTACAAGAAAAAATAAATTGGCTTTAC
AGAGATTTTGGAATCTTAAATATCGTTAATAGCATTGATTTAAGTCTTTATTTAAAAGAA
TTAAATTTGCCTTCAATAATTTCTTATTTGTGTGGGACACTGTTGAATTATCCTTTTCAA
AAAATACTGCAAAACTTTGATTATCGTAAAAGACCTCTTAGCTTAAATGAAATTAATTAT
TTAAGAGCTTTTAGTTACTTTCCTTTGAGGATACTATCTATCCTAACAAATAATATCCTT
TCTATTGAAAAAAGTAAACTTGAAGAGCTATTTAACAAGAGTTAATTGGCTTCTTGTTTG
AGCTTAAAGCAACTAGAAAATCTCCTTTAAGAGAACTTAATTGAGAAACACTTTGAAATG
TTCTGTATTGATAGAAATTACAACGAACAATAACAATATTTTTTGAGAAAAATTTTGAAG
TGGAGAATACAGAGAGCCAAATTAGAAGATGAAAGTGTTGAATATATCTTCCCTGCATGC
ATAATTGAGAAATTTATTTCAGTGTATCCAACTTCTTCATAATAAGTGTTAGATGAATTA
GTAAAATATCAGCAAGAAATAAACCTCTAGCACTATGAAACATTTTACTCTTTTTTTGAT
GAGAGAAGCTATCAAAATTACAAAGAAAAGAATAGATTTAAACATGATACAAAATAATAA
CAACAATAAACCTATTAAATATAGCAAACTTAGCAAATGCAATCACCAACTCCCAAAAAA
ATGCAATCTATCCAAGGAAGCACTAACTAAACTCCTTAATTGCAAAAAGAGAATTCGCAG
CAATAAAACTAAGAATCCCCTCCTCTTAGTCCAACTTCTTTATTAAAAGCAGTTAACTGG
GTGGTAAAAAATCCGAACCATGAAGGAACACCAGAAAAAAATTACAAAAAATTGATAAGC
AGATAAAGTTTATCACCTTCGATACTAAAATATTCCCCATAAAATGGAGTTGATTCGCCT
TAACATGATAATATCATGAAGGATTTATTATGTGTAATCAATGAGAGAAACTCTAAACAA
TCCTAAGTTAAATTTTAGCATTCTGTTTAGAGAGAACTGAGTAGAATAAATAACATGGAG
GACACAAATGATACTGAAGAAGAGCAGTAATAAAAGGAAGACACTTTCTAAATGAACCTA
TTAAATAAGTTATAATCAAAATAATACTACATAAAAAACTCTAAAGAAAACCTTCCAAAC
AATATTACAGATATCTTTGAATTAGCTAATCGTAAAAGAAAGAAAAATAAAGATAAAAAG
AGAAAGAAAGAAGAAAAGTCACCACAATTAACTGCTTAGGTAAATAAATAAATAAACACA
CACACATTTCAATAAACTCTTTTTTTTAATTTAATCATTTTATTTATTTGTTTTATTAAT
TTAATAATTTATTTTACATTAAATTCTAAAAGAAGGAACAAAAAGAAAAAGAAAAATTAA
ATATAGATAAGCTTCTAAAAGACTTGA

>TTHERM_00463370(protein)
MKNPFDSNKYFMNENLNLAFENISKPQLLFNDSYFTVSNNTQLQNQSQGQLVEKIKAIQN
NIIPYNEIRFFQNLRNIQACFTFDFDKDQSKSLYIKTDQEFNRMLELLRNAGVICWDVHF
NTYRSFYGFVCFLEISTIDQDYIIDCLSLRNEIHRLKEIFLDKQIVKITLDLQEKINWLY
RDFGILNIVNSIDLSLYLKELNLPSIISYLCGTLLNYPFQKILQNFDYRKRPLSLNEINY
LRAFSYFPLRILSILTNNILSIEKSKLEELFNKSQLASCLSLKQLENLLQENLIEKHFEM
FCIDRNYNEQQQYFLRKILKWRIQRAKLEDESVEYIFPACIIEKFISVYPTSSQQVLDEL
VKYQQEINLQHYETFYSFFDERSYQNYKEKNRFKHDTKQQQQQTYQIQQTQQMQSPTPKK
MQSIQGSTNQTPQLQKENSQQQNQESPPLSPTSLLKAVNWVVKNPNHEGTPEKNYKKLIS
RQSLSPSILKYSPQNGVDSPQHDNIMKDLLCVINERNSKQSQVKFQHSVQRELSRINNME
DTNDTEEEQQQKEDTFQMNLLNKLQSKQYYIKNSKENLPNNITDIFELANRKRKKNKDKK
RKKEEKSPQLTAQVNKQINTHTFQQTLFFNLIILFICFINLIIYFTLNSKRRNKKKKKNQ
IQISFQKT

>TTHERM_00463370(gene)
ATGAAAAATCCATTTGACAGCAATAAATGTAAGATAGCAGTTTGATTTTTCCATTCAATT
TAACAAATAGTCTTAAACATAAATAACTTCATCAATTTTATAATATGGCAGATTTTATGA
ACGAGAATTTAAATTTGGCTTTTGAAAATATTTCAAAGCCTCAGCTGTTATTTAACGATA
GCTATTTTACTGTCAGTAACAATACTTAGTTGTAGAACCAATCGCAAGGCTAGCTTGTTG
AAAAAATTAAAGCAATATAAAACAATATCATTCCTTACAACGAAATAAGATTCTTTTAAA
ATCTAAGAAACATACAAGCATGTTTTACTTTTGACTTCGATAAAGACCAATCCAAATCAT
TGTACATTAAAACAGACTAAGAATTTAACAGAATGTTAGAGCTCGTAAAATCTTTTATTA
AAAAAATGGTTTTTATTTACAGATTTAAAATAATTTGAAAAGTTGAGAAATGCTGGAGTC
ATATGCTGGGATGTGCATTTCAATACTTACAGAAGTTTCTATGGTTTTGTTTGCTTTCTA
GAAGTACTTAAATTGTTGCCAATTAATCATAAATTTGAACATTTTTTATAAGATTCCTAA
TAAAATATTTACTTAGGATGATATATTTTTGTTTAAAATACATTTGATATCTTGATAGAT
AGATCTACAATACAAACAAATACTTGATTTTAATATTCATTTTTATCATTAAAGATTAGT
ACAATTGATCAAGATTATATCATAGATTGCTTAAGTTTGAGAAATGAAATACATAGATTA
AAGGAAATCTTTTTGGATAAGTAGATTGTTAAAATAACTTTGGATTTACAAGAAAAAATA
AATTGGCTTTACAGAGATTTTGGAATCTTAAATATCGTTAATAGCATTGATTTAAGTCTT
TATTTAAAAGAATTAAATTTGCCTTCAATAATTTCTTATTTGTGTGGGACACTGTTGAAT
TATCCTTTTCAAAAAATACTGCAAAACTTTGATTATCGTAAAAGACCTCTTAGCTTAAAT
GAAATTAATTATTTAAGAGCTTTTAGTTACTTTCCTTTGAGGATACTATCTATCCTAACA
AATAATATCCTTTCTATTGAAAAAAGTAAACTTGAAGAGCTATTTAACAAGAGTTAATTG
GCTTCTTGTTTGAGCTTAAAGCAACTAGAAAATCTCCTTTAAGAGAACTTAATTGAGAAA
CACTTTGAAATGTTCTGTATTGATAGAAATTACAACGAACAATAACAATATTTTTTGAGA
AAAATTTTGAAGTGGAGAATACAGAGAGCCAAATTAGAAGATGAAAGTGTTGAATATATC
TTCCCTGCATGCATAATTGAGAAATTTATTTCAGTGTATCCAACTTCTTCATAATAAGTG
TTAGATGAATTAGTAAAATATCAGCAAGAAATAAACCTCTAGCACTATGAAACATTTTAC
TCTTTTTTTGATGAGAGAAGCTATCAAAATTACAAAGAAAAGAATAGATTTAAACATGAT
ACAAAATAATAACAACAATAAACCTATTAAATATAGCAAACTTAGCAAATGCAATCACCA
ACTCCCAAAAAAATGCAATCTATCCAAGGAAGCACTAACTAAACTCCTTAATTGCAAAAA
GAGAATTCGCAGCAATAAAACTAAGAATCCCCTCCTCTTAGTCCAACTTCTTTATTAAAA
GCAGTTAACTGGGTGGTAAAAAATCCGAACCATGAAGGAACACCAGAAAAAAATTACAAA
AAATTGATAAGCAGATAAAGTTTATCACCTTCGATACTAAAATATTCCCCATAAAATGGA
GTTGATTCGCCTTAACATGATGTAAAAAATTTATTTGAATAAGTTTAAGATTGAAAAAGT
TTTTTTATTAAAAGAATATCATGAAGGATTTATTATGTGTAATCAATGAGAGAAACTCTA
AACAATCCTAAGTTAAATTTTAGCATTCTGTTTAGAGAGAACTGAGTAGAATAAATAACA
TGGAGGACACAAATGATACTGAAGAAGAGCAGTAATAAAAGGAAGACACTTTCTAAATGA
ACCTATTAAATAAGTTATAATCAAAATAATACTACATAAAAAACTCTAAAGAAAACCTTC
CAAACAATATTACAGATATCTTTGAATTAGCTAATCGTAAAAGAAAGAAAAATAAAGATA
AAAAGAGAAAGAAAGAAGAAAAGTCACCACAATTAACTGCTTAGGTAAATAAATAAATAA
ACACACACACATTTCAATAAACTCTTTTTTTTAATTTAATCATTTTATTTATTTGTTTTA
TTAATTTAATAATTTATTTTACATTAAATTCTAAAAGAAGGAACAAAAAGAAAAAGAAAA
ATTAAATATAGATAAGCTTCTAAAAGACTTGA