Identifiers and Description

Gene Model Identifier

TTHERM_00691500

Standard Name

RRP41 (exosome complex exonuclease RRP41)

Aliases

PreTt02988 | 106.m00175 | 3674.m00041

Description

3' exoribonuclease family, domain 1 containing protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• RNA binding (IEA) | GO:0003723
• 3'-5'-exoribonuclease activity (IEA) | GO:0000175

Biological Process

• RNA processing (IEA) | GO:0006396

Domains

• ( TIGR01966 ) ribonuclease PH
• ( PF02425 ) Paralytic/GBP/PSP peptide
• ( TIGR02065 ) exosome complex exonuclease 1
• ( PF01138 ) 3' exoribonuclease family, domain 1
• ( PF03725 ) 3' exoribonuclease family, domain 2

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.6%

TetraMine Data

TTHERM_00691500

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_17594.1	9.99955252024689e-165	3 exoribonuclease family, doma in 1 containing protein (241 a a)
Oxytricha	Contig15304.0.g55	2.998863950472602e-38	3 exoribonuclease family, doma in 1
WormBase	WBGene00007201	9.99893167504554e-35	locus:exos-4.1 Putative exos ome complex component RRP41 status:Confirmed UniProt:Q17 533 protein_id:CAA97771.3
DictyBase	DDB_G0291328	1.0004572433669413e-23	DDB_G0291328 on chromosome: 6 position 128308 to 129151
Stentor Coeruleus	SteCoe_12747	2.1151310375910805e-19
SGD	YGR195W	2.99851380290819e-19	SKI6 Exosome non-catalytic cor e component; involved in 3-5 R NA processing and degradation in both the nucleus and the cy toplasm; has similarity to E. coli RNase PH and to human hRr p41p (EXOSC4)

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00691500(protein)
MNQDFLVLQEFREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHNKSTR
RESEGFLNVQYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIV
SVIQADGSAKSSIFNAISLALMDAGIPMKDFTVSSTVISLNSEILLDATYQEQKKASAEL
IISYLPRSDQVDFMEMKSSKISQQDTKEMCKIAVDGCKQMYQILRTFVLESSVKTLLSTR

>TTHERM_00691500(coding)
ATGAATTAAGATTTTTTAGTGTTGTAAGAGTTTAGAGAAGATGGTAGAAAAAAAAATGAG
CTGCGTAAAGTAGATTGCATATTAGGATTTGATTAAACTGTTGAAGGATCTTGTAAATTG
ATTTAAGGATTGACTGAAATAGTTTGCTTGATAAAGGGACCTCATAATAAATCAACTAGA
AGAGAATCAGAAGGATTTTTAAATGTTTAATATAATGTAGCCCCATTCAGTGGAACTGAT
AGAAGAAAAATTTCCAAATTCGATAAGGATTGGAACGAATTCACTGAAAATTTAAGAGTC
AGTTTTGAAAGTGTAATTCTAACAGAGCAATTAGGTTCAGGAGAAATTGATATTATAGTT
TCAGTTATTTAAGCTGATGGTAGTGCCAAAAGCTCAATTTTTAATGCCATTTCCTTAGCT
TTAATGGATGCAGGTATTCCAATGAAGGATTTCACTGTATCTTCAACAGTAATAAGCTTA
AACAGCGAAATTTTATTAGATGCAACATACTAGGAGTAAAAAAAAGCTAGTGCAGAATTG
ATAATATCTTATTTACCAAGAAGTGATTAGGTAGATTTTATGGAAATGAAATCAAGTAAA
ATAAGTTAATAAGATACTAAAGAGATGTGTAAAATTGCGGTTGATGGTTGTAAATAAATG
TATCAAATATTAAGAACTTTCGTTTTGGAAAGCTCAGTAAAAACTCTTTTGAGCACAAGA
TGA

>TTHERM_00691500(gene)
ATGAATTAAGATTTTTTAGTGTTGTAAGAGTTTAGAGAAGATGGTAGAAAAAAAAATGAG
CTGCGTAAAGTAGATTGCATATTAGGATTTGATTAAACTGTTGAAGGATCTTGTAAATTG
ATTTAAGGATTGACTGAAATAGTTTGCTTGATAAAGGGACCTCATAATGTATTTATTAAC
ATTATTAAATTTAGTTAAATAAAAATAATTCTATGAAATACAAAAGAAATCAACTAGAAG
AGAATCAGAAGGATTTTTAAATGTTTAATATAATGTAGCCCCATTCAGTGGAACTGATAG
AAGAAAAATTTCCAAATTCGATAAGTAATAAATAGTTTAAACTGCAGATGTTTTATCATT
TATATTATATAATAATGTAGGGATTGGAACGAATTCACTGAAAATTTAAGAGTCAGTTTT
GAAAGTGTAATTCTAACAGAGCAATTAGGTTCAGGAGAAATTGATATTATAGTTTCAGTT
ATTTAAGCTGATGGTAGTGCCAAAAGCTCAATTTTTAATGCCATTTCCTTAGCTTTAATG
GATGCAGGTATGCTTTTTTAATTAATAAACTTTTCTCAAATTTTAATCGAAATATTTGCA
TTAAATAAGGTATTCCAATGAAGGATTTCACTGTATCTTCAACAGTAATAAGCTTAAACA
GCGAAATTTTATTAGGTAAATTATATTCATGAAGTTTTAAAAGTAGTAAATAAAATATAT
AAAAAAGATGCAACATACTAGGAGTAAAAAAAAGCTAGTGCAGAATTGATAATATCTTAT
TTACCAAGAAGTGATTAGGTAGATTTTATGGAAATGAAATCAAGTAAAATAAGTTAATAA
GATACTAAAGAGATGTGTAAAATTGCGGTTGATGGTTGTAAATAAATGTATCAAATATTA
AGAACTTTCGTTTTGGAAAGCTCAGTAAAAACTCTTTTGAGCACAAGATGA