Identifiers and Description

Gene Model Identifier

TTHERM_01050590

Standard Name

RRP40 (exosome component RRP40)

Aliases

PreTt27802 | 212.m00060

Description

component of the exosome exonuclease complex

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.8%

TetraMine Data

TTHERM_01050590

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_01462.1	1.0001999920370885e-161	hypothetical protein (249 aa)
DictyBase	DDB_G0276783	2.998577119979921e-31	DDB_G0276783 on chromosome: 2 position 7291532 to 7292461
Oxytricha	Contig20442.0.g90	1.000382677035467e-28	Tht1-like nuclear fusion prote in
SGD	YOL142W	3.0000451088882257e-25	RRP40 Exosome non-catalytic co re component; involved in 3-5 RNA processing and degradation in both the nucleus and the c ytoplasm; predicted to contain both S1 and KH RNA binding do mains; has similarity to human hRrp40p (EXOSC3)
WormBase	WBGene00010325	1.9994498063102785e-22	locus:exos-3 status:Confirme d UniProt:Q93830 protein_i d:CAB01875.1
Stentor Coeruleus	SteCoe_24647	0.0000000000006914400106940203

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_01050590(coding)
ATGGAAATAGAAAAATAGTAATAGCCTGCTTTGAATATAGTTTTACCAGGAGAGTAAATA
GATTTGAGCTAGCTTACAGGATAGCTTTAAATCGATGAAAAATCGTTTACATTGACCACT
GATAATTAATTATACTCAAATAAATCAGGTGTTTTAGTTGATACCTAGCTAAAAGATGGG
TCCTGTGGTTTAACAGTCAAAGCTTACGCTCAAAAATATTATGCAGAAGTTGATGATTAT
GTTATTGGAGTAATTAAGGGTAGAGTATAAGAATATTATTTGGTTGATATTGGAGCTTAA
GAAGATGCATTATTATCTTTTTATGGCTTTGAAGGTGCCACTAAAAAGAATAGACCAAAT
TTAAGAGATGGATCTTTGATATTTTGCAGAGTTACTGAAGCAAATAAATATATGAAAATT
AAAGTTGATTGTATTCATCCTAAAATTAAAAAGTAGTGGATGACTGGAGAATCATTTTTT
GGATAGTTAAAAGACGGTATGGTTTCTAATATCTCAATTGAATATGCAAGGAGTATAATA
GGATAAGGAGACTTCGTATTTAGAGCATTTAAAAAATACATTAAATCTTTTGAGACAGCA
ATAGGTTCAAACGGTAAAGTTTGGATCAAAACACTCTAACCATAAAATACAATTTTGATC
CTTAACGTGCTTAATAAATGTGAGAATATGTCTATCGAATAAATTAAAGTTTATGTTGAT
TAAATCTCTCCTTTGCTTGTAAAAGAATGA

>TTHERM_01050590(protein)
MEIEKQQQPALNIVLPGEQIDLSQLTGQLQIDEKSFTLTTDNQLYSNKSGVLVDTQLKDG
SCGLTVKAYAQKYYAEVDDYVIGVIKGRVQEYYLVDIGAQEDALLSFYGFEGATKKNRPN
LRDGSLIFCRVTEANKYMKIKVDCIHPKIKKQWMTGESFFGQLKDGMVSNISIEYARSII
GQGDFVFRAFKKYIKSFETAIGSNGKVWIKTLQPQNTILILNVLNKCENMSIEQIKVYVD
QISPLLVKE

>TTHERM_01050590(gene)
ATGGAAATAGAAAAATAGTAATAGCCTGCTTTGAATATAGTTTTACCAGGAGAGTAAATA
GATTTGAGCTAGCTTACAGGATAGCTTTAAATCGATGAAAAATCGTTTACATTGACCACT
GATAATTAATTATACTCAAATAAATCAGGTGTTTTAGTTGATACCTAGCTAAAAGATGGG
TCCTGTGGTTTAACAGTCAAAGCTTACGCTCAAAAATATTATGCAGAAGTTGATGATTAT
GTTATTGGAGTAATTAAGGGTAGAGTATAAGAATATTATTTGGTTGATATTGGAGCTTAA
GAAGATGCATTATTATCTTTTTATGGCTTTGAAGGTGCCACTAAAAAGAATAGACCAAAT
TTAAGAGATGGATCTTTGATATTTTGCAGAGTTACTGAAGCAAATAAATATATGAAAATT
AAAGTTGATTGTATTCATCCTAAAATTAAAAAGTAGTGGATGACTGGAGAATCATTTTTT
GGATAGTTAAAAGACGGTATGGTTTCTAATATCTCAATTGAATATGCAAGGAGTATAATA
GGATAAGGAGACTTCGTATTTAGAGCATTTAAAAAATACATTAAATCTTTTGAGACAGCA
ATAGGTTCAAACGGTAAAGTTTGGATCAAAACACTCTAACCATAAAATACAATTTTGATC
CTTAACGTGCTTAATAAATGTGAGAATATGTCTATCGAATAAATTAAAGTTTATGTTGAT
TAAATCTCTCCTTTGCTTGTAAAAGAATGA