Identifiers and Description

Gene Model Identifier

TTHERM_00649100

Standard Name

RRM62 (RNA recognition motif-containing protein 62)

Aliases

PreTt09224 | 94.m00142 | 3677.m00050

Description

RRM62 U2 snRNP auxiliary factor small subunit

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• nucleic acid binding (IEA) | GO:0003676
• zinc ion binding (IEA) | GO:0008270

Domains

• ( PF08648 ) Protein of unknown function (DUF1777)
• ( PF00642 ) Zinc finger C-x8-C-x5-C-x3-H type (and

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 12.8%

TetraMine Data

TTHERM_00649100

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_17866.1	9.997316819378982e-180	zinc finger protein (330 aa)
Oxytricha	Contig706.0.g82	1.0003926095686843e-81	Zinc finger C-x8-C-x5-C-x3-H t ype (and similar)
DictyBase	DDB_G0285077	9.997652352281279e-57	u2af1 on chromosome: 4 positio n 2799520 to 2801698
WormBase	WBGene00006698	8.000462645699572e-47	locus:uaf-2 status:Confirmed UniProt:Q9U2U0 protein_id :CAB55137.1
Stentor Coeruleus	SteCoe_33425	2.4426007377405277e-36

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00649100(coding)
ATGTTTGATTTTTTATTTGTTTGTTTCTTTGAGAGGGGAAAGAAAAAAGAGAAAAGAGAA
AAATATTAATATAATTATTTAATAATCAAAGAAAAGTAAAGAGAAAAGACTTAAATCTTA
GAAAAGCGGTAGAAAAAGGAAGTCTATAGACAATATCTAAATAAACTAAGTTAAGGTATA
AATTTTAGTTAGCTAGCTTATTAGTAAAGGAAAGCAAAGAAAGCAAGTAAGGTAGTAAAA
GTTAGTTAGTAGTAGAAGTAGTAAGGTTAATAGTAAAAGTAAGTAAATAAGTAAGTTTAA
GTTTTAGAAATGGCTGAGAAATTAAGTCGTATGTATGGTACAGAAGAAGACAAGGTCAAT
TGTCCCTTCTACTTTAAAATTGGTGCTTGCAGATATGAAAATAAATGTCTCAGAATCCAC
AACAGACCCTCTGAGAGTTAGACTATCTTGATTAAGCACATGTACTAGAACTCCCCCACT
GAGTTGGCTTTGGCTTAGGGTAATAGAGTCAGCGAAGAAGAAGCTTAGAAGGCTTTGAAT
CACTACGAAGAATTTTATGAGGAAGTCTTTTTGGAGTTAGCAAGTTACGGAGAAATTGAT
GACTTGATCATTTGTGATAACATCGGTGATCACATGAAAGGAAACGTTTACGTTAAATAT
GTTAGGGAAAGCGAAGCTCTTAAGTGCTTGATGTCCTTAAAGACTCGTTATTACGACAAG
CAACAGCTCCAACCTGAATTCTCTCCCGTTACTGATTTCTCTAATGCAAAATGCAAACAA
TATATTGAAGGTCAGTGCAAAAGAAGTGGATACTGTAATTACATTCACTCTAAGCCTATC
GGTAGACCATTCAGAAGATCCCTTTTCAGATAAATGTACGAAGAGCATCCTGAATACAAG
AACAGGTCTCGCTCTCGCTCTAGATCAGATGATGATGAGAGATCTAAAAAGAAAAGAAAG
GATAAGGAAAGATCTGAAAAACATGAAAAAGACTCCAAAAAGAAGCATTCTCGTTCCAGA
AGCTCCCATAAAAAGCACAAGAAAGATAAAGATAAAAAGAAGAAGAAGTCTAGATCTCAC
TCCAAGCATTCTAAGTCAGCTTCTCCTGGCTACAAAAACTCTGAAGAAAGAAGAGCTGAT
ATCGCAAAGTGGGGCGAGGAAGATGATGAAGAAGACATGAAAGTCAATGCAAGCGGTTCA
GTCAACAATAATGGAACCACCAGCAATAACGAATAAAGCGACAGCAATAACAAGCAAGGC
ACTCACGATTATTTAGCCTAGCTTGTTAAGCCATAGAATTGA

>TTHERM_00649100(protein)
MFDFLFVCFFERGKKKEKREKYQYNYLIIKEKQREKTQILEKRQKKEVYRQYLNKLSQGI
NFSQLAYQQRKAKKASKVVKVSQQQKQQGQQQKQVNKQVQVLEMAEKLSRMYGTEEDKVN
CPFYFKIGACRYENKCLRIHNRPSESQTILIKHMYQNSPTELALAQGNRVSEEEAQKALN
HYEEFYEEVFLELASYGEIDDLIICDNIGDHMKGNVYVKYVRESEALKCLMSLKTRYYDK
QQLQPEFSPVTDFSNAKCKQYIEGQCKRSGYCNYIHSKPIGRPFRRSLFRQMYEEHPEYK
NRSRSRSRSDDDERSKKKRKDKERSEKHEKDSKKKHSRSRSSHKKHKKDKDKKKKKSRSH
SKHSKSASPGYKNSEERRADIAKWGEEDDEEDMKVNASGSVNNNGTTSNNEQSDSNNKQG
THDYLAQLVKPQN

>TTHERM_00649100(gene)
ATGTTTGATTTTTTATTTGTTTGTTTCTTTGAGAGGGGAAAGAAAAAAGAGAAAAGAGAA
AAATATTAATATAATTATTTAATAATCAAAGAAAAGTAAAGAGAAAAGACTTAAATCTTA
GAAAAGCGGTAGAAAAAGGAAGTCTATAGACAATATCTAAATAAACTAAGTTAAGGTATA
AATTTTAGTTAGCTAGCTTATTAGTAAAGGAAAGCAAAGAAAGCAAGTAAGGTAGTAAAA
GTTAGTTAGTAGTAGAAGTAGTAAGGTTAATAGTAAAAGTAAGTAAATAAGTAAGTTTAA
GTTTTAGAAATGGCTGAGAAATTAAGTCGTATGTATGGTACAGAAGAAGACAAGGTCAAT
TGTCCCTTCTACTTTAAAATTGGTGCTTGCAGATATGAAAATAAATGTCTCAGAATCCAC
AACAGACCCTCTGAGAGTTAGACTATCTTGATTAAGCACATGTACTAGAACTCCCCCACT
GAGTTGGCTTTGGCTTAGGGTAATAGAGTCAGCGAAGAAGAAGCTTAGAAGGCTTTGAAT
CACTACGAAGAATTTTATGAGGAAGTCTTTTTGGAGTTAGCAAGTTACGGAGAAATTGAT
GACTTGATCATTTGTGATAACATCGGTGATCACATGAAAGGAAACGTTTACGTTAAATAT
GTTAGGGAAAGCGAAGCTCTTAAGTGCTTGATGTCCTTAAAGACTCGTTATTACGACAAG
CAACAGCTCCAACCTGAATTCTCTCCCGTTACTGATTTCTCTAATGCAAAATGCAAACAA
TATATTGAAGGTCAGTGCAAAAGAAGTGGATACTGTAATTACATTCACTCTAAGCCTATC
GGTAGACCATTCAGAAGATCCCTTTTCAGATAAATGTACGAAGAGCATCCTGAATACAAG
AACAGGTCTCGCTCTCGCTCTAGATCAGATGATGATGAGAGATCTAAAAAGAAAAGAAAG
GATAAGGAAAGATCTGAAAAACATGAAAAAGACTCCAAAAAGAAGCATTCTCGTTCCAGA
AGCTCCCATAAAAAGCACAAGAAAGATAAAGATAAAAAGAAGAAGAAGTCTAGATCTCAC
TCCAAGCATTCTAAGTCAGCTTCTCCTGGCTACAAAAACTCTGAAGAAAGAAGAGCTGAT
ATCGCAAAGTGGGGCGAGGAAGATGATGAAGAAGACATGAAAGTCAATGCAAGCGGTTCA
GTCAACAATAATGGAACCACCAGCAATAACGAATAAAGCGACAGCAATAACAAGCAAGGC
ACTCACGATTATTTAGCCTAGCTTGTTAAGCCATAGAATTGA