Identifiers and Description

Gene Model Identifier

TTHERM_00857880

Standard Name

RRM58 (RNA recognition motif-containing protein 58)

Aliases

PreTt09052 | 152.m00072

Description

polyadenylate-binding protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF08777 ) RNA binding motif
• ( TIGR01661 ) ELAV/HuD family splicing factor
• ( TIGR01622 ) splicing factor, CC1-like family
• ( TIGR01659 ) sex-lethal family splicing factor
• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,
• ( TIGR01628 ) polyadenylate binding protein, human types

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.2%

TetraMine Data

TTHERM_00857880

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_07184.1	1.9998745702418095e-48	hypothetical protein (1214 aa)
Oxytricha	Contig1956.0.g14	2.0004286606204839e-16	RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase	WBGene00004701	0.0000000029989608248573072	locus:rsp-4 Probable splicin g factor, arginine/serine-rich 4 status:Confirmed UniPro t:Q09511 protein_id:CCD68735 .1
SGD	YGR159C	0.0000008998839737394744	NSR1 Nucleolar protein that bi nds nuclear localization seque nces, required for pre-rRNA pr ocessing and ribosome biogenes is
DictyBase	DDB_G0277353	0.000004000864880866421	DDB_G0277353 on chromosome: 2 position 7808700 to 7811174

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00857880(coding)
ATGTTTGTAGAAAGTGAAGTTTTTACTGAAAATACTTAATCAAACTCACAATTTATAGCA
AATAATTTCTAGTAAATGGTGAAAGATGAATCTAAAATTAGCAATATAAAAGATACTTAT
GTAAAAGAAAATGATATAAACTCATCAAGAATTAACGCTGATGAAGATAATAGATAATAG
TCTATGTCTTCTAAATTCTCCAATCGCAATACATCTGCTTCTTCAAGAAGATAATCTTCT
TAAGTAAGCGCTCCTAGGTCTTCTAGATCTTCTTCTTCTGGATCTTCCTGCTCTTCCTCA
TCATCATAATCTTCTTCATCATCATAAAGGTCTCGATCATCTTCTTCATCTTCCTCCTAA
ACATATCGCACATCAAAAATGAGTAAAAGCTCAAAGATTTAGGATAAAAGAGCAACTAGA
AATGAAAATGAGTCTTAAAATAGCAAATGCTTGTACATAGCGAATTTAAGTGAGAAAGTG
ACTGAATCAAATTTAAAGAAACTTTTTGAAGAGTATGGAGAAATAGATTATGTAAATATA
TGCTATAAACCTTACAGTTAGTAATAACAGGGTATTAAAATACCTGCTGGATATGCCTTT
ATAAAATATTACAAGGAGAAAGATGCTTAAAGAGCATTAAATCACCTCGATGAAACAAAT
TTAAAAGGAAAAAAAATAAAAATTGAATATGCAAAAAGAGAGAAGCCCAGATAGTCAAAG
GATGGACCATACCATAAAATTGGAAATGTTTATAATAAAAAATAATCAGATAATTAAACA
GAGTTAAATAAATGTGATAAGATGAGTAAAAAGGATGTTCAATATTTTTCGAATTATAAC
CCTTCTGAATAAAATAAGTATAAAAGTCAAAGGCACTACATAAAGGATAAATAATCATCC
CAAAATTTATTAAAGAAAACTAATTCTGAATTTGTTGATAATAGATAGAACCTGACGATG
GATTAATAAGATTGCTTTGCAAATTAAGATTCCTACAGAAATAACTAAAAAGCAAACACA
TAAGTTAAATCTAGAAGCCGCAGCAGAAGCAGAACTTTAAGTGATAAAGTTATTTTGATT
ATGGACTTCATGATATCTAAAAGCGATAATAAGAACTAACATTAAACAATCGATTAGCAT
ACTGCTACTGTTAAAGAAGAAGATCAAAAAGTGCTTGATGAAGCCACTCTCTAGCATATT
ATGAATAAAAATGCAAATTAATAATAAATAAGCTCAATTTATGAAAATCAATCTAAAAAT
ATACGCCAAAAAACTGTTTATTCTGAAAAAAGGTAGATGGATTAGGTTAACAAAGGAAGC
TGTCTCTATATTTCGAATTTAAGCCATAAAGTGACTGATTAGCAGCTAAAGAAGATCTTT
AGCACATATGGAAGAGTTGAATATGCAAATATTTGTTACGAGCCATATAGTTAGCAGTAA
AGAGGATAAAAAATCCCTAGAGGAATAGGATTTGTCAAATACGCTAGGAATTCAGATGCT
TTGAAAGCGATTGAAGAGCTTGATGGAAAAATGATAAAAAATAAAGAAATTAAAATAATG
CTTTCTAAAAGAGATGAGCCAAGAGTTTCGCACAAAGGACCCTACTTTGGCAAAAGCCCT
AAAAAAGATAAAAAAGACTCAGATAGCAAGAAAGAATCAAAAAGGATTTAAAAGTAATCT
TCTTATTAATCCCAAACTTCAGAAGAAAATAATTCGATTGAAAGACATAGATCTATTAGC
AGGGAATCATCTGAGTCTAATGGGGATTTGACTTTCTAATAAAAATAAAAAAACTAAGCT
AAAACACATTAAGGAATAATAGATTAAGAATAATTGAATCTGAAAAATAAACAAAAGCAT
CAAAGCGATAGTTAAAATATATTATATAATGGTAGATCTACTCGCCATTAAAATAATAAA
TAAAAAAATTAAAATGATGAAAAGGACGATTAACGCATCCATGAAGAGCTAAATAAATAG
GTTAACCACTTCCAAACTTCAATATAAAATGAAAAATAAATGAATGTGTAAAATAGATCT
AGATCAAGATCTAATGAAAACTACAAAGAAAAGTAGTATAAATCAAACCAAAAGTAAACA
AGGTATAATCGTTTTAAATAGCACGGATAAAGATCTTCATCTACTTCTAACAACACATCA
TAATCCTCTTCTTCTTCGCATTCATCGTCATCATCATCTTCTTCTCCCTCATCATAACAA
TCTAGTCCTAGTTCTTCACCTTCTTAATTTTCTCGTAAAAAAAAAAAGTAGAGTGTAAGA
AAGTATAAAAATGATCAATCTTCTTAAAACAATAACAAAAGATCCAAAAAAAACTCAAAA
CAATATCGATAAAGGTCTTCATCATCTTCTTCATAATCTAACAACTCTACCTAATAATAA
AATAAAAATTCAATTAGAATAAGAAATTGA

>TTHERM_00857880(protein)
MFVESEVFTENTQSNSQFIANNFQQMVKDESKISNIKDTYVKENDINSSRINADEDNRQQ
SMSSKFSNRNTSASSRRQSSQVSAPRSSRSSSSGSSCSSSSSQSSSSSQRSRSSSSSSSQ
TYRTSKMSKSSKIQDKRATRNENESQNSKCLYIANLSEKVTESNLKKLFEEYGEIDYVNI
CYKPYSQQQQGIKIPAGYAFIKYYKEKDAQRALNHLDETNLKGKKIKIEYAKREKPRQSK
DGPYHKIGNVYNKKQSDNQTELNKCDKMSKKDVQYFSNYNPSEQNKYKSQRHYIKDKQSS
QNLLKKTNSEFVDNRQNLTMDQQDCFANQDSYRNNQKANTQVKSRSRSRSRTLSDKVILI
MDFMISKSDNKNQHQTIDQHTATVKEEDQKVLDEATLQHIMNKNANQQQISSIYENQSKN
IRQKTVYSEKRQMDQVNKGSCLYISNLSHKVTDQQLKKIFSTYGRVEYANICYEPYSQQQ
RGQKIPRGIGFVKYARNSDALKAIEELDGKMIKNKEIKIMLSKRDEPRVSHKGPYFGKSP
KKDKKDSDSKKESKRIQKQSSYQSQTSEENNSIERHRSISRESSESNGDLTFQQKQKNQA
KTHQGIIDQEQLNLKNKQKHQSDSQNILYNGRSTRHQNNKQKNQNDEKDDQRIHEELNKQ
VNHFQTSIQNEKQMNVQNRSRSRSNENYKEKQYKSNQKQTRYNRFKQHGQRSSSTSNNTS
QSSSSSHSSSSSSSSPSSQQSSPSSSPSQFSRKKKKQSVRKYKNDQSSQNNNKRSKKNSK
QYRQRSSSSSSQSNNSTQQQNKNSIRIRN

>TTHERM_00857880(gene)
ATGTTTGTAGAAAGTGAAGTTTTTACTGAAAATACTTAATCAAACTCACAATTTATAGCA
AATAATTTCTAGTAAATGGTGAAAGATGAATCTAAAATTAGCAATATAAAAGATACTTAT
GTAAAAGAAAATGATATAAACTCATCAAGAATTAACGCTGATGAAGATAATAGATAATAG
TCTATGTCTTCTAAATTCTCCAATCGCAATACATCTGCTTCTTCAAGAAGATAATCTTCT
TAAGTAAGCGCTCCTAGGTCTTCTAGATCTTCTTCTTCTGGATCTTCCTGCTCTTCCTCA
TCATCATAATCTTCTTCATCATCATAAAGGTCTCGATCATCTTCTTCATCTTCCTCCTAA
ACATATCGCACATCAAAAATGAGTAAAAGCTCAAAGATTTAGGATAAAAGAGCAACTAGA
AATGAAAATGAGTCTTAAAATAGTATAAATTTATTAAATTTAGTTTGATTATGCTATTAA
AAATCCATTAAAAATATCATCAAAAATATTCTCAAAAAGGCAAATGCTTGTACATAGCGA
ATTTAAGTGAGAAAGTGACTGAATCAAATTTAAAGAAACTTTTTGAAGAGTATGGAGAAA
TAGATTATGTAAATATATGCTATAAACCTTACAGTTAGTAATAACAGGGTATTAAAATAC
CTGCTGGATATGCCTTTATAAAATATTACAAGGAGAAAGATGCTTAAAGAGCATTAAATC
ACCTCGATGAAACAAATTTAAAAGGAAAAAAAATAAAAATTGAATATGCAAAAAGAGAGA
AGCCCAGATAGTCAAAGGATGGACCATACCATAAAATTGGAAATGTTTATAATAAAAAAT
AATCGTAAGAATATTAATTAAATATTTAATTTTAAAATAATTTATTATTGAACCAGTTAA
AAAAGGAAAAGAAGTTAATCATTAGAGCATATTAAAGATAAATTTTCTTAGAAAAATAAA
TATATTAGAGATAATTAAACAGAGTTAAATAAATGTGATAAGATGAGTAAAAAGGATGTT
CAATATTTTTCGAATTATAACCCTTCTGAATAAAATAAGTATAAAAGTCAAAGGCACTAC
ATAAAGGATAAATAATCATCCCAAAATTTATTAAAGAAAACTAATTCTGAATTTGTTGAT
AATAGATAGAACCTGACGATGGATTAATAAGATTGCTTTGCAAATTAAGATTCCTACAGA
AATAACTAAAAAGCAAACACATAAGTTAAATCTAGAAGCCGCAGCAGAAGCAGAAGTAAT
TCTATGAGGAATAAATACTCGTGAGAGCATAAAACTATTATAACATATTTTGTTTATTTT
ACTAATTTAAAAACAATATTCTACCTTTTTGTAAATGAAATTTTAAGAATGTCCTATTTT
AATAGCAGTAAAAGCATATTAAATAATCTTCACAAACAAAAACCCTCTTCTATCAAAGAA
AGATTGATAATTAATTAATTATAAAAACTAGAAATTATTTAGTCTTAAAACAATGTTTTC
TTGAGAAAAAAATTATAAATCTTAGGTGTAAAAAGACTTAAATAAAAATAAAATATTGAT
CTCCCATTTTTTTATTAAATTTATTAAAAAATTTACTAATTTACTCTATTTTATTTATCT
GGGACTCTATTTATTGCAGCTAGCTAGCTGAAAATTTAAATAATTTTGATCATAGATTAT
AAAGACTGATTTTGTAAATTAAATGAATTAGATTGATTATTAAAAACTTATATAGCTATG
ATGAAATATAAAATTTTTTAAATGACGAAAATTACGTGTAAAAAATATTATATTTTTTTG
AGTAATAATTGAAACATAATACATTTTTTTCAATTTTATAAATAGATCAATGAAAAAACA
CAGTTGTTAATGTGAAAAAGTCTAGTTTTGAATTTCAGGTAATTTAATAGAAGAATGTAT
TAAAATAGTTATTTAGTTTGTAAAAAATAGTTATTCTATTTTGAGACTTGTAAGCCTCAT
GCTATATTTATGAAGGAAAGGATATATGAAGCAAAAGAAAAATCTAAATAAATAAATACG
CATAAATTATAAGATTAATCAAAAAGGCAAGAAAAATAACATTTACTCTCAAACAAAGTC
TTTTAGCTAATAAAAAGATAATAATGTGCAAAAAAAAGTGATATTCTTTAATTATATTGC
ATATTTTATTAAAAGAATTAGAAGAACAAAATTTTTATAGCAGCTGGAGCTAATTCAAAT
TTTAGCTTTAAGTGATAAAGTTATTTTGATTATGGACTTCATGATATCTAAAAGCGATAA
TAAGAACTAACATTGTAAAATCATTTTTATAAATTCATTTTAGACTTTTATATTATTTGT
TGTTTCAAATTTAGAACAGCACTAATTTTGCAAGATAATTTAAAATTATCAATTTGTGCC
TTTAAAAAAGAAAAGTAGAAAGACGGAAATACTTTAATTTAAGCTTTGCCTATTAGATTT
CTCTTAAATTTTTTTTATATAAATAAGAAACAATCGATTAGCATACTGCTACTGTTAAAG
AAGAAGATCAAAAAGTGCTTGATGAAGCCACTCTCTAGCATATTATGAATAAAAATGCAA
ATTAATAATAAATAAGCTCAATTTATGAAAATCAATCTAAAAATATACGCCAAAAAACTG
TTTATTCTGAAAAAAGGTAGATGGATTAGGTTAACAAAGGTAGATTTCTTACAAATTTTC
ATATAAATTACCTTAAATTTACTCATAATTGCTTAATAATTAACAGGAAGCTGTCTCTAT
ATTTCGAATTTAAGCCATAAAGTGACTGATTAGCAGCTAAAGAAGATCTTTAGCACATAT
GGAAGAGTTGAATATGCAAATATTTGTTACGAGCCATATAGTTAGCAGTAAAGAGGATAA
AAAATCCCTAGAGGAATAGGATTTGTCAAATACGCTAGGAATTCAGATGCTTTGAAAGCG
ATTGAAGAGCTTGATGGAAAAATGATAAAAAATAAAGAAATTAAAATAATGCTTTCTAAA
AGAGATGAGCCAAGAGTTTCGCACAAAGGACCCTACTTTGGCAAAAGCCCTAAAAAGTAT
TAAATTTTTTCAATTAATTAAATAAATAAAATAAAAATAAGGTTAAATCATTGTTAAAAT
ATCATAGTTTAAAATAATTTTAAAATTAAAATAATACTTATAAAATTGTTTGAAATAATA
AAAAAACAAATATCTTATGACAAACCAAGCAAAAAATAATAATTCGCCAAAGTATTATAT
TTGTTTTGTTAAATGATTACTTCAATAATTATTAAGAAAATTAATTAATTTTTTTTAAAG
TCAAATAATGAACAAAAAATTAATTAAAAAATTTGAAAATAAATAAAAGAAAGCAAAAAT
CATCTTCTTTTGTTAGTTTTTCTTTAAAATTCACTATAATTAATTTAATTAACTAACTTG
TTATCAAAGCGCATTCTTTCTTTTTATAAACCAAAACTATAGCTTGATATTATTTTTAAT
ATTACTAATTTTAATTAAGAGATAAAAAAGACTCAGATAGCAAGAAAGAATCAAAAAGGA
TTTAAAAGTAATCTTCTTATTAATCCCAAACTTCAGAAGAAAATAATTCGATTGAAAGAC
ATAGATCTATTAGCAGGGAATCATCTGAGTCTAATGGGGATTTGACTTTCTAATAAAAAT
AAAAAAACTAAGCTAAAACACATTAAGGAATAATAGATTAAGAATAATTGAATCTGAAAA
ATAAACAAAAGCATCAAAGCGATAGTTAAAATATATTATATAATGGTAGATCTACTCGCC
ATTAAAATAATAAATAAAAAAATTAAAATGATGAAAAGGACGATTAACGCATCCATGAAG
AGCTAAATAAATAGGTTAACCACTTCCAAACTTCAATATAAAATGAAAAATAAATGAATG
TGTAAAATAGATCTAGATCAAGATCTAATGAAAACTACAAAGAAAAGTAGTATAAATCAA
ACCAAAAGTAAACAAGGTATAATCGTTTTAAATAGCACGGATAAAGATCTTCATCTACTT
CTAACAACACATCATAATCCTCTTCTTCTTCGCATTCATCGTCATCATCATCTTCTTCTC
CCTCATCATAACAATCTAGTCCTAGTTCTTCACCTTCTTAATTTTCTCGTAAAAAAAAAA
AGTAGAGTGTAAGAAAGTATAAAAATGATCAATCTTCTTAAAACAATAACAAAAGATCCA
AAAAAAACTCAAAACAATATCGATAAAGGTCTTCATCATCTTCTTCATAATCTAACAACT
CTACCTAATAATAAAATAAAAATTCAATTAGAATAAGAAATTGA