Identifiers and Description

Gene Model Identifier

TTHERM_01099050

Standard Name

RRM53 (RNA recognition motif-containing protein 53)

Aliases

PreTt20575 | 232.m00042

Description

RRM53 RNA recognition motif protein; polyadenylate-binding protein- putative

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF08777 ) RNA binding motif
  • ( PF00076 ) RNA recognition motif. (a.k.a. RRM,

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.5%

TetraMine Data

TTHERM_01099050

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_19377.12.0004261429631518e-110hypothetical protein (275 aa)
SGDYER165W0.00000000002000577768187062PAB1 Poly(A) binding protein,
part of the 3-end RNA-processi
ng complex, mediates interacti
ons between the 5 cap structur
e and the 3 mRNA poly(A) tail,
involved in control of poly(A
) tail length, interacts with
translation factor eIF-4G
OxytrichaContig11357.0.g940.000000009996807949091551RNA recognition motif_ (a_k_a_
RRM, RBD, or RNP domain)
WormBaseWBGene000039030.0000007997233352734267locus:pab-2 status:Confirmed
UniProt:Q19581 protein_id
:CAA90446.2

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_01099050(coding)
ATGGCTGACAAGGAAGAAATCACTTTAGATGCTTATGCTAAGAAGCAAAAATTCTAAGAA
GGTGGCAATAAAAAGAAGGAAAACGGCAAAGGAGGAAAAGGTAGAATTGAAAAGAAATTG
AACGGAGTAAAATCTGTCAAAGGTGCTATCCGTCGTACTGGTCGCTAAGATAACAATCGC
TCTGGAGGGAAACCTCGTTAAAACTCCTCAAATAATTCAAACAAATAGAGGAGCATCAGC
AGACCTGTTAAGGAATCTAGACCTGCTAAGATCAAAACTGTTCGCCCTATTCCTGAACAC
AAAAAAAGAATCGTCAAAGTTTACAACTTAGTTCCTAATATTAACAACGAAGAATTCTAT
AACCTCTTTGTCAAATATGGAAGTATCGAGTAATCAAAGATCGAAACTGATAAGAAAGGA
AAGTCTGAAGAAAAGGGTTATGTTGTTTACAGAGATAACGATGCTGCTAAGCGTGCTATT
GATGACTTGAATGGTGTCGAATTAGAAGGTAGAATAATTACAGTTGAATTCATGAAGGAC
GGTGACAAACTCCCTGATAGACAAAATAACAATGCTAGCAGTGGAGAAAGAGAAAGAAGA
AACTCCGATAGCCATAATAGCCAAGGTGTATAAAAGAAGAGAATCTTTAAGGATAAGGAT
AACAGAAGAGATAGCAGAAGAGATAGAGATAGAAACAGTAACAATGGCAACAAAAGAAGA
GATTTCGATAGAAATAGAAGAAATAACGGTTCTCACAATAATAATGGAAACAGAAATAGA
AACAATAACAGAAATAATAACAATAACAGAAATAACAATAGAAATAACAGAAAATACAGC
AAATGA


>TTHERM_01099050(protein)
MADKEEITLDAYAKKQKFQEGGNKKKENGKGGKGRIEKKLNGVKSVKGAIRRTGRQDNNR
SGGKPRQNSSNNSNKQRSISRPVKESRPAKIKTVRPIPEHKKRIVKVYNLVPNINNEEFY
NLFVKYGSIEQSKIETDKKGKSEEKGYVVYRDNDAAKRAIDDLNGVELEGRIITVEFMKD
GDKLPDRQNNNASSGERERRNSDSHNSQGVQKKRIFKDKDNRRDSRRDRDRNSNNGNKRR
DFDRNRRNNGSHNNNGNRNRNNNRNNNNNRNNNRNNRKYSK


>TTHERM_01099050(gene)
ATGGCTGACAAGGAAGAAATCACTTTAGATGCTTATGCTAAGAAGCAAAAATTCTAAGAA
GGTGGCAATAAAAAGAAGGAAAACGGCAAAGGAGGAAAAGGTAGAATTGAAAAGAAATTG
AACGGAGTAAAATCTGTCAAAGGTGCTATCCGTCGTACTGGTCGCTAAGATAACAATCGC
TCTGGAGGGGTATATTCTATAATAAACAATAATTAAATTACTCGATGAATAAATCTGCTA
AAACGATTAAGATATTTTGCCTATTCAAAACAATTACTAACTATCTAAGGAGCTAAAATC
GGCAAGCTAGATTAGAAGGCATGAGGAGGAAAAAATATTTTCATCGTTTAGTTATTCTTC
TATTTCTATCATTTTTCAAAAAAAGGGGATACTTAGTATTAAATAAAAGTTTTCCTTTTT
TAGAAAAATGCTGTTTAATGATTGATATTGATGATTGATAAGGAGAGTAAAAACAGTCTA
GGTCATTCATTAATATTCCTTTTCAAAAGAAAAAAATTCTTTTAATACTTAAAAGCAGAA
ATAAAATGATTTGATTCTGCTAGACAGTCTTTACTATATTAGTAAAAAGCAAAATAAAAA
AGCCAAGTGCATGAAAAAAATAATATTCCAAAATGAACTTTTCCTAAATTTAATTGCCAG
ATTGGCACATTTTCCCCCACTATACAATCACCAACACACACACTCAAATCTCATAAATCC
CCCATAAAAATCCCTTTTAAATAGTTGATTTTATTTGAATTTTATCTTTGGTTAAGAGAA
ACAGTATTGTTTGTTGATTAGGCATGGTGATTGCCTAATCCTAATATTATACGACGTATA
ATTTATTTGTATGGGCAAAAACTTTATAAAAAGAATGAGTTATTGGTGTCGTGATGTTAA
ATGAATGAATTTTTTAAATTCTATCAATTTTTATTTTAAAAGACTTGGACAAAGTCTAAA
TTTCAATTTCTACCTCCTGCGATTGTTTCTTTCTTAATAAGATAATCGAGAATTCAAATA
AAAAATGTTTGTTAATCCTTTTTGATAATCTGTGGCTTTCTATTTTTTTGAGCTATAAAA
CCCTATCATTCATACTTAGCACTATTCTCATATTATCATTCATATGTTCAAAAGTTTCTG
ATCACATAAGAAATTAGTAAAGACAAGATTATCTTTCAAATTTTAAGTAAAAACAACTTA
TCTAGACATAAAAATAATAAATTTTTGAAAACAGAAATTAAAAATAGCTATTTTATTTAA
AAATCTTATAAGCACAAATAAGATCAGAGTTATGTAAAAAACAAACATAAAAATTTAAAG
CAAAATAATTTATGATAAAATCAATTCTAGGATTTAACATTCAAAAGATAAATTATGATA
TTAAAATGAATTATAACTAATGAAATCAGATATCTATAAAGCTGAATCTATCTATATTTG
ATAAAATACTTAAGATTTAGTTAAATATTCTCCTGTAAACATTAAAATTTTATTTTCCAT
TAAATAAATAGCTATAAAGTATTAACTTCCTATCAAACTAGATATTATAAATAAATATGC
GTTAGTATAATTCTAAATAAGAAGTAAGGCATATCTATCTATCCTTTATCACATCAAATC
ATTATCAATCATTATTTTTGTTTAAATCTAGAAGAAAACTAATTTAAATTAGAAAAAATT
TGGTTAAGCAATTAGCGTGTATCACCAATAATTAATATTACATAGAAATAATTAGAAGTT
TAGAAACAGATTTATTCATGTTATATGAATGGTTAATTAATATTTTAAAAAATATTATTT
TTATTAGAAACCTCGTTAAAACTCCTCAAATAATTCAAACAAATAGAGGAGCATCAGCAG
ACCTGTTAAGGAATCTAGACCTGCTAAGATCAAAACTGTTCGCCCTATTCCTGAACACAA
AAAAAGAATCGTCAAAGTTTACAACTTAGTTCCTAATATTAACAACGAAGAATTCTATGT
AAAATTTTTAAGCTGCCTTATTTCAAAAAGTTTATCTTTGTTCTAAATAAAATAAGAACC
TCTTTGTCAAATATGGAAGTATCGAGTAATCAAAGATCGAAACTGATAAGAAAGGAAAGT
CTGAAGAAAAGGGTTATGTTGTTTACAGAGATAACGATGCTGCTAAGCGTGCTATTGATG
ACTTGAATGGTAACTTATATAATTTAAATCTCAAAAAGCAAACAATTCATTTAATTAGCT
TCAATAATAACTTTTCTTTTTGTAATACTCTAAGGTGTCGAATTAGAAGGTAGAATAATT
ACAGTTGAATTCATGAAGGACGGTGACAAACTCCCTGATAGACAAAATAACAATGCTAGC
AGTGGAGAAAGAGAAAGAAGAAACTCCGATAGCCATAATAGCCAAGGTGTATAAAAGAAG
AGAATCTTTAAGGATAAGGATAACAGAAGAGATAGGTAATTTATTACAAAAGCATTCATA
AACTGATTGCTCATCACATATAATTTAAAAAAATAAACAGCAGAAGAGATAGAGATAGAA
ACAGTAACAATGGCAACAAAAGAAGAGATTTCGATAGAAATAGAAGAAATAACGGTTCTC
ACAATAATAATGGAAACAGAAATAGAAACAATAACAGAAATAATAACAATAACAGAAATA
ACAATAGAAATAACAGAAAATACAGCAAATGA