Identifiers and Description

Gene Model Identifier

TTHERM_00898250

Standard Name

RRM52 (RNA recognition motif-containing protein 52)

Aliases

PreTt20530 | 160.m00066

Description

RRM52 RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor; RNA binding protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.2%

TetraMine Data

TTHERM_00898250

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_41364.1	1.0004671766404936e-76	RNA binding protein (119 aa)
Oxytricha	Contig11357.0.g94	2.9994376937714457e-52	RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase	WBGene00016808	5.997418848378574e-45	Pre-mRNA branch site p14-like protein status:Confirmed U niProt:Q8ITY4 protein_id:CCD 65337.1
DictyBase	DDB_G0286297	2.0008536325002377e-42	DDB_G0286297 on chromosome: 4 position 4322636 to 4323120
Stentor Coeruleus	SteCoe_17406	2.8625185805493937e-20
SGD	YGL044C	0.0000000006000548789370351	RNA15 Cleavage and polyadenyla tion factor I (CF I) component involved in cleavage and poly adenylation of mRNA 3 ends; in teracts with the A-rich polyad enylation signal in complex wi th Rna14p and Hrp1p; mutant di splays reduced transcription e longation in the G-less-based run-on (GLRO) assay; required for gene looping

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00898250(coding)
ATGAGCAATAAGATTGTTAAGTTACCCCCTGAGGTTAATAGAGTAGTTTATGTTAGAAAT
CTACCATATAAAATATCAGCAGAAGAATTATATGATGTTTTTGGAACTTATGGTCCAATT
AGATAAATAAGAAAGGGAGTTAGTGGTGATAAAAAAGGAACAGCATTTGTAGTTTATGAA
GATATTTTTGATGCAAAGACTGCAGTTGAACATTTAAATGGTTTTAATGTTGCAGGCAGA
TATTTAATTGTTTTATATTATCAACCTCATAAAATCAACAAAAAGACTGATTTACAAAAG
AAATAAGAAGAAGTTGATCGTTTAAAAGAAATAGCAAGCAAATAAACTTAATAGTGA

>TTHERM_00898250(protein)
MSNKIVKLPPEVNRVVYVRNLPYKISAEELYDVFGTYGPIRQIRKGVSGDKKGTAFVVYE
DIFDAKTAVEHLNGFNVAGRYLIVLYYQPHKINKKTDLQKKQEEVDRLKEIASKQTQQ

>TTHERM_00898250(gene)
ATGAGCAATAAGATTGTAAATATTAGCATTAAAAAACCAATTTTATATTCTAAAATATTT
TAATTCAAATAGGTTAAGTTACCCCCTGAGGTTAATAGAGTAGTTTATGTTAGAAATCTA
CCATATAAAATATCAGCAGAAGAATTATATGATGTTTTTGGAACTTATGGTCCAATTAGA
TAAATAAGAAAGTAAATAAATTATTTTTATTCAAATTGAAAATAGCTAATTATTTTATCA
ATATTCAATAGGGGAGTTAGTGGTGATAAAAAAGGAACAGCATTTGTAGTTTATGAAGAT
ATTTTTGATGCAAAGACTGCAGTTGAACATTTAAATGGTTTTAATGTTGCAGGCAGATAT
TTAATTGTTTTATATTATCAACCTCATAAAATCAACAAAAAGACTGATTTACAAAAGAAA
TAAGAAGAAGTTGATCGTTTAAAAGAAATAGCAAGCAAATAAACTTAATAGTGA