Identifiers and Description

Gene Model Identifier

TTHERM_00658750

Standard Name

RRM41 (RNA recognition motif-containing protein 41)

Aliases

PreTt02160 | 97.m00146 | 3724.m00053

Description

RNA recognition motif-containing protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• zinc ion binding (IEA) | GO:0008270
• nucleic acid binding (IEA) | GO:0003676

Domains

• ( PF00098 ) Zinc knuckle
• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.4%

TetraMine Data

TTHERM_00658750

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_16217.1	5.9995201161793426e-102	RNA binding protein (316 aa)
Oxytricha	Contig1956.0.g14	0.00000019998969434520019	RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase	WBGene00003902	0.0000029996948234116693	locus:pab-1 status:Confirmed UniProt:Q9U302 protein_id :CAA21572.1
DictyBase	DDB_G0283687	0.000004000864880866421	DDB_G0283687 on chromosome: 4 position 982205 to 984735
SGD	YER165W	0.000004000864880866421	PAB1 Poly(A) binding protein, part of the 3-end RNA-processi ng complex, mediates interacti ons between the 5 cap structur e and the 3 mRNA poly(A) tail, involved in control of poly(A ) tail length, interacts with translation factor eIF-4G

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00658750(coding)
ATGTCATTCTCTATTAAAAGTAATTAGATTGATAAATAGATAGATAGACAGAAAAGCAGA
TCAAACAAAGTGATATATATTTATAAAACTATTAATCAAAGAAAGGAAAGTCATAAAAAA
AATAATAATAAATTAGAAGAAATAAATAAATAAATTTTGAAAAAATAATAATTGCATTAA
ATTTAAAAAATGTCTCGCCCATAAACAAAGCTTTATGTTGCCAAATTCGGTAACAACGTA
GGTAGAAAAGAAATCGAAGAAACTTTTGGTAAGTATGGTGATATCTATAGTTGCAAAGTA
AATGACCGTGAAGGTTATGCAACTGTATCTTACAAATATTAAGATTAAGCTGATAAAGCT
ATTTCAAAACTTAATGGATCTGATGTTTTAGGTGGAAGTTTATTGGTAGAACATACTCTC
AAGAAGAGCAGAGATGATGACCATAGCAGATATCCCAGAGACAGCAGATATGGTAACAGC
AGTTATAGAGATCAAAATGGATACAGAGGAGGTCCTTAAAGCTCTTCTCGTTATGGTGGA
GATCGTGGTCGCAGTAGTGGAGATAGAGATAGCTACAGAAGAGGAACTAGTGGACCACCT
AGAACTGATAAAGAAAAATATATGAAGGAAGGTTTATGCTTCACCTGCAAGGGATAAGGT
CATATCTCTAAAAATTGTCCTGAAGCTAGAAACGGTGGAAGTGGAAGAGACAGAAGAGAC
TCTAGAGGCGGAAGAGTTAATGGATTTAGACCTGATAGAGAAAGAAGACCTTATAGAGAA
AGAAGTAGAAGTAATGATAGAAGCAAGGGCAAGAGCAGAAGAGACAATAGCAGAAGCAGA
AGCCCTCATGATAAGTATGCTGACAAGGATAGAAAGAGAAGATCAAGAAAGCACTCTAGA
AAGAGCAGTTCTTCTAGCAGCCACTCAGGAAGATCTAATTCTAGAAAGGACAGAAAGAGA
TCTGAATCTTCCTCTTCTCAATCCTCTAGATCAAATTCTAATTCTAGCCGCTCTAATTCA
GCAAGCGTTAATAAGTAATAAAATGGAGATATGAAAATGAACGGCAACATGAATGACTAA
ATTAAAGATATGAATGTTTCTCAATGA

>TTHERM_00658750(protein)
MSFSIKSNQIDKQIDRQKSRSNKVIYIYKTINQRKESHKKNNNKLEEINKQILKKQQLHQ
IQKMSRPQTKLYVAKFGNNVGRKEIEETFGKYGDIYSCKVNDREGYATVSYKYQDQADKA
ISKLNGSDVLGGSLLVEHTLKKSRDDDHSRYPRDSRYGNSSYRDQNGYRGGPQSSSRYGG
DRGRSSGDRDSYRRGTSGPPRTDKEKYMKEGLCFTCKGQGHISKNCPEARNGGSGRDRRD
SRGGRVNGFRPDRERRPYRERSRSNDRSKGKSRRDNSRSRSPHDKYADKDRKRRSRKHSR
KSSSSSSHSGRSNSRKDRKRSESSSSQSSRSNSNSSRSNSASVNKQQNGDMKMNGNMNDQ
IKDMNVSQ

>TTHERM_00658750(gene)
TGATTTTGACTAAAAAATTCAGATTTCTTTTTATTTATTTAATAAATTTAAAAAGAGAGA
AACAGATGTCATTCTCTATTAAAAGTAATTAGATTGATAAATAGATAGATAGACAGAAAA
GCAGATCAAACAAAGTGATATATATTTATAAAACTATTAATCAAAGAAAGGAAAGTCATA
AAAAAAATAATAATAAATTAGAAGAAATAAATAAATAAATTTTGAAAAAATAATAATTGC
ATTAAATTTAAAAAATGTCTCGCCCATAAACAAAGCTTTATGTTGCCAAATTCGGTAACA
ACGTAGGTAGAAAAGAAATCGAAGAAACTTTTGGTAAGTATGGTGATATCTATAGTTGCA
AAGTAAATGACCGTGAAGGTTATGCAACTGTATCTTACAAATATTAAGATTAAGCTGATA
AAGCTATTTCAAAACTTAATGGATCTGATGTTTTAGGTGGAAGTTTATTGGTAGAACATA
CTCTCAAGAAGAGCAGAGATGATGACCATAGCAGATATCCCAGAGACAGCAGATATGGTA
ACAGCAGTTATAGAGATCAAAATGGATACAGAGGAGGTCCTTAAAGCTCTTCTCGTTATG
GTGGAGATCGTGGTCGCAGTAGTGGAGATAGAGATAGCTACAGAAGAGGAACTAGTGGAC
CACCTAGAACTGATAAAGAAAAATATATGAAGGAAGGTTTATGCTTCACCTGCAAGGGAT
AAGGTCATATCTCTAAAAATTGTCCTGAAGCTAGAAACGGTGGAAGTGGAAGAGACAGAA
GAGACTCTAGAGGCGGAAGAGTTAATGGTAAATATTTGATATAATCAATCATATATGTTT
AATAAATAAAATCCTCTTAACTCCTTTAGAATATTTAGTTTTATTTGATAAAAAAATGAA
TAAATATAATTTTAAAATGAATTATTTAACATTTTCGAATGCTAAATATTTAAGGAATCA
TAGATTTTGAAAATTTATTTGGTTTATTGGTCTTGCGTTTAAACAAATCTCATTAAAATT
TAAAAATGAGTTTTTTTGTTTTTTAAATTCTTAACTCCTTAGGACTGAAATTGATTGATT
AATTTATTTAATTTTCTGCTTTTCTTCTATTATATTAGCTTAATTTGTTGTGAAAAAGGA
CAATAGATAGATAATTAGATAGTTAGCTAAAAATTCTTTTTAAATTAATCTCAAACTTCC
TTTTATATTAAATAATCTAATTAATTAATTAATATTCACTGATGTGTCTAATTAGTTAAT
TAATTTCAGAGAAATAAAGCACCACCAAAATACAACTTAAGCCACTTTTTTTTATTTTTT
GAATATTGCTCCAAAAGCATAAAAATTTAAATTAGAATATAATCACACATACATACATAG
TCATTTACTTATATTTAGAAACAATTTTATATAAATAATAGGATTTAGACCTGATAGAGA
AAGAAGACCTTATAGAGAAAGAAGTAGAAGTAATGATAGAAGCAAGGGCAAGAGCAGAAG
AGACAATAGCAGAAGCAGAAGCCCTCATGATAAGTATGCTGACAAGGATAGAAAGAGAAG
ATCAAGAAAGCACTCTAGAAAGAGCAGTTCTTCTAGCAGCCACTCAGGAAGATCTAATTC
TAGAAAGGACAGAAAGAGATCTGAATCTTCCTCTTCTCAATCCTCTAGATCAAATTCTAA
TTCTAGCCGCTCTAATTCAGCAAGCGTTAATAAGTAATAAAATGGAGATATGAAAATGAA
CGGCAACATGAATGACTAAATTAAAGATATGAATGTTTCTCAATGAAGATCATTTAATCA
AAATAAAACAATATAAATAAATAATTGATTCTTTCATCTCATAAATAAGATATAATATCA
TAATATAATTAAAACTATATACTTTGAAGAGTCTTGGTGTTTTTAGTAATTTCATTCATA
ATAAATATACCTCGAGTGCTCATATAGTACCTTTAAGCCTATTATATATCTATCTATCCT
TCATTATTAGTTATGGAACAGATATTACAAGTAGATTTGAAGAGAGTAAGAATATAAGCA
AAGCTATAAACAGATAAAGCCAATAAACTAGTAAGCAGTAAAAGAAAGCAATAAATTAAG
TGAGATGCATATACATTAAGGCAGAAAAAATAATAACGAATAAAATGCTTAAGTTTATCA
ACCATAAATTGTAGTTCAAACAAACAAACAAAAAAATGTAATCAAACGAAAAAATAAAAA
AATAAGGTTTTAATTCTTCTCTTTTTAAACAAACCTCAAACTCTCTTTCTAAATACTTTA
ATCATCTAAATTCTATTATCACCATTATTATCATTATTATTATAATATATTTATATTTTT
TTTTTGAGAAAGTATAAAATAATTTTATTGTGATGTTTTTTGTTCCTTATTATTATGTGA
GACTCGATCTATGCATGAATGAATTACTATTATTTTGATTGAAATTCAGAATTGTGTTCA
GATTAGAGTTTGTTCCAGCTGAAATATGAGATTGATTGATTGAAATTATGAATGAAATGA
TTTGAAATTGAATTCAAAATGAAAAAATGATTGATTGTGTTGTTGATAAGTTTTTTGTGA
CAGATTTCAGAATTATTGTGAATTTTGTGGAAAATTAAGGAATTTATTAGATTTTTTCAA
AGAAAAGATAATTTTCATGCATGTTGGTTGGTTGGTTGAAAAAGAATGATTTGTAATTGA
AGAAATAATTTGATTAGATTTGTAAAGAAAAATTACATTGGAGAAATAAAAGAGAAAATC
AGATTTTACAGAAAAAATTAAATTTATCCAGAAAAAATATTATTTTAAAGAGAGATTTGT
TCATATTAATTATTCAATCAAGCAAGTCTAAAATTTACAAATATGAAATGAAAGAAAGAA
AGAAAGAAATAAAGAAATAAAGTAAGTTTTAAAAAAATATTACTCTAACCAAATATTTTA
GGTATGAAATCAAATAAATTTTATTCATAAAAGGCATATTATTAAATTGTATTTATTTTT
ATAATTTAGGACAAATTTTGTTGGGAGATTATCCTTTTTAAATTTATTTTATTTAAAATA
ATTTAAATCTTTTCCAAAAA