Identifiers and Description

Gene Model Identifier

TTHERM_00655870

Standard Name

RRM39 (RNA recognition motif-containing protein 39)

Aliases

PreTt03681 | 96.m00150

Description

RNA recognition motif-containing protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF08675 ) RNA binding domain
• ( TIGR01649 ) hnRNP-L/PTB/hephaestus splicing factor family
• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.1%

TetraMine Data

TTHERM_00655870

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_18022.1	9.997093137033517e-262	polypyrimidine tract-binding p rotein (871 aa)
WormBase	WBGene00004207	0.000000000010004361180063202	locus:ptb-1 status:Confirmed UniProt:Q8T3E6 protein_id :CAD30435.1
DictyBase	DDB_G0284321	0.0000000029989608248573072	DDB_G0284321 on chromosome: 4 position 1760065 to 1764027
Oxytricha	Contig511.0.0.g1	0.00000030014504373857585	RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
SGD	YIR009W	0.000030009396760408108	MSL1 U2B component of U2 snRNP , involved in splicing, binds the U2 snRNA stem-loop IV in v itro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00655870(coding)
ATGTCTTAGGCAAATAAACTTCAAAAATCGCAGCCTGTTCAAATATAATAGCACTTAAAC
GGAAATCAAGCCAAGCAATCGTTATCTTCAGTTATGCAGTAGCAGCAATAAAAAATAAGT
GCTTAAGAATAGTCTTTGAAAAATGAAGATTAGGCTATGCACAGAACCCACATGAAGGCT
AATACAATCGAAAATCTATCACCTGTGTTACTTGTAATTTTCAATACTAACGAAGCTAAG
ACAAACTAGGATCTCTTTGACATGTTTTCGTCTTATGTGAGAGTGATTCGTGTTTTAATA
TTTGAAAGAAAAGAAAATAATACAAAGTGCTTTGTCGAAATGATGACATAATCTGAGGCT
ACTTATGTAAAAAACTAAATTTCCTTCTAGAAGACTAAGAATTTGTTAAAAAATTTACAA
GTTTATTATGCTTAAATCTCAACAATCGACTTGTAAAACCATTATTCAGAAGGCTAAGAC
TTTACTAGCTTCTATGCAACTCATCCTAATTTCACTTGTTAATACATTTAGGAAACTTAA
TAATACTCTCAGAACCCTATTTTGTAAAACAGCACCATCAACCCCAAATTAAGCAGTCAA
GCAGCTTTTTAAAATAGCTTCTTAAACCCAGGCAAAAATAATGTTCAATAATCTATTAAC
AGTCCTTCAGCTTTTTATAACAATTATAACCCAAATAACTAAAGTTTTGCTGGTCCTGCT
AATAATAAAACTGCAGGATTTGGAGCTCCTTACGTTAATTCTTAGCAATTTTTACCTAAT
CATGTACCAGCTGAAATGGACAATAATTTCGATTAATCACATTTTCTAGATGGATAAATT
CGTCCAAGCTCTATTTCTTCTATTGATTATCAAATGCAGTCAAATTTACATTTATCTCAA
TACAATCATACTTCAATTCACCCTCATTCTCAATACACCACCAATGGCGGTAACAGCGGT
AATCTAACAAGCAGACACACCATTCACGGAAATCCTAATATGCAACCTAATAACACTCCA
TTCGAATCCAAAATTTATTACACAACTCAATAGCCTCAACAATAGCAAAATATTAATTAA
CGCAACACTATGTCTTAATAGCTTTACAGAGATTTGCAAAAGAAGGAATAAGTTTTATCG
CATCACATTAATTAAAATATGTAGCAAAATATGCAAAAATCCGCTCTTCTTCTATCACCT
TATTTCAATGTCACTCCTGGCATAAATAAGCCAGAGATGATAAACAATCCACCTCCTATT
TCCTTGAACAGTAGCACTAACAGGAGTCCTTCATCCACCTCTTACTCAATAAATAACAAC
AACTTAAATAATGCTAATCAAATATAATATGACTCTGATGTTGATGAAAATGTCTAAGTC
AGTTAACCTTCAGCATTCAGAACTAAGTATCGTGATGTCTAATTTTTCAATGGCAACTCC
AGCAACGTAGGCTATTTAGAAGATGTTGATCTTTAGTAATAGCAAATGGGAGCTGACTAA
GAGGCTAAAAAAGTTCTATTTGTTAGACATCTTGACTTTCCTGATTTAAAAATATCTATG
CTTTATAACCTTTTTAGCAATTATGGAAATATTGTGAAAATTATTTTCATGAAGCAGAAG
AGACAAGCTCTGATAGAATTCGAAGAAACTTCATAAGCAACCGCAGCCAAAGAAAATTTA
AACAACTTGCCATACTACAATGCTTAAATTAAAATAGATTACTCCAAATATGACCAAATA
GACCTCCAAAAGAAGAAACTTCATTCTGGAGAAAATAACGAACAAGAATAAGTCCTGTAA
ATCCCTCAATAATGCTTCAGATATAAAAATAAAAAGGGAATTCCGCAGTACGCTCCTAAA
AGCACTCTCCATGTTTCTAACATCAAAAAAGAATTCTTCGACTACAACCTAATTTAAGAT
TTCTTTTCTTCTTCAGGTGCAAAAATAAAGATGCTAAAACTCATTCCTAATGAAAAAAAG
TAAATGTGTCTAATTCAATTTGAAACCCTTGATGATGCTCTAAGAGTAATATCAACTTTC
CACGATACACCTTTCCATGGTAGAAACCTGTGCATTTCATTCACGAAGAGTGCAAACTCA
ATATAGTAAGCTCCTGGATAATAAAATAATATCAATACTAACTTCTCTAGCTCTAATAAC
ATGAGCAACAATTTAGAATAATAATAGTAAATACTTATGAAATAGCAATAACAAATGCAA
AATTAACAATATAATATCAACATTTTGAACTAAAATTAACTTCTTATTTAACAATAGCAA
TATTAGAATCCCTAATATGGTCAAAACAACACATTCTAAATCAATAACTTTGCCAATAAT
AACAACAATACTCATGGACTTGCTGCTCAACAGTCAACTTTGTTTGGTTACGATCTTAGT
GATAACAATTATCACCAATACTATGATGAATACAATGACAGTGATGAAGATCCTTAAGTG
ACTAATTCTATTTAGAACTTAGGTATTTGA

>TTHERM_00655870(protein)
MSQANKLQKSQPVQIQQHLNGNQAKQSLSSVMQQQQQKISAQEQSLKNEDQAMHRTHMKA
NTIENLSPVLLVIFNTNEAKTNQDLFDMFSSYVRVIRVLIFERKENNTKCFVEMMTQSEA
TYVKNQISFQKTKNLLKNLQVYYAQISTIDLQNHYSEGQDFTSFYATHPNFTCQYIQETQ
QYSQNPILQNSTINPKLSSQAAFQNSFLNPGKNNVQQSINSPSAFYNNYNPNNQSFAGPA
NNKTAGFGAPYVNSQQFLPNHVPAEMDNNFDQSHFLDGQIRPSSISSIDYQMQSNLHLSQ
YNHTSIHPHSQYTTNGGNSGNLTSRHTIHGNPNMQPNNTPFESKIYYTTQQPQQQQNINQ
RNTMSQQLYRDLQKKEQVLSHHINQNMQQNMQKSALLLSPYFNVTPGINKPEMINNPPPI
SLNSSTNRSPSSTSYSINNNNLNNANQIQYDSDVDENVQVSQPSAFRTKYRDVQFFNGNS
SNVGYLEDVDLQQQQMGADQEAKKVLFVRHLDFPDLKISMLYNLFSNYGNIVKIIFMKQK
RQALIEFEETSQATAAKENLNNLPYYNAQIKIDYSKYDQIDLQKKKLHSGENNEQEQVLQ
IPQQCFRYKNKKGIPQYAPKSTLHVSNIKKEFFDYNLIQDFFSSSGAKIKMLKLIPNEKK
QMCLIQFETLDDALRVISTFHDTPFHGRNLCISFTKSANSIQQAPGQQNNINTNFSSSNN
MSNNLEQQQQILMKQQQQMQNQQYNINILNQNQLLIQQQQYQNPQYGQNNTFQINNFANN
NNNTHGLAAQQSTLFGYDLSDNNYHQYYDEYNDSDEDPQVTNSIQNLGI

>TTHERM_00655870(gene)
ATGTCTTAGGCAAATAAACTTCAAAAATCGCAGCCTGTTCAAATATAATAGCACTTAAAC
GGAAATCAAGCCAAGCAATCGTTATCTTCAGTTATGCAGTAGCAGCAATAAAAAATAAGT
GCTTAAGAATAGTCTTTGAAAAATGAAGATTAGGCTATGCACAGAACCCACATGAAGGCT
AATACAATCGAAAATCTATCACCTGTGTTACTTGTAATTTTCAATACTAACGAAGCTAAG
ACAAACTAGGATCTCTTTGACATGTTTTCGTCTTATGTGAGAGTGATTCGTGTTTTAATA
TTTGAAAGAAAAGAAAATAATACAAAGTGCTTTGTCGAAATGATGACATAATCTGAGGCT
ACTTATGTAAAAAACTAAATTTCCTTCTAGAAGACTAAGAATTTGTTAAAAAATTTACAA
GTTTATTATGCTTAAATCTCAACAATCGACTTGTAAAACCATTATTCAGAAGGCTAAGAC
TTTACTAGCTTCTATGCAACTCATCCTAATTTCACTTGTTAATACATTTAGGAAACTTAA
TAATACTCTCAGAACCCTATTTTGTAAAACAGCACCATCAACCCCAAATTAAGCAGTCAA
GCAGCTTTTTAAAATAGCTTCTTAAACCCAGGCAAAAATAATGTTCAATAATCTATTAAC
AGTCCTTCAGCTTTTTATAACAATTATAACCCAAATAACTAAAGTTTTGCTGGTCCTGCT
AATAATAAAACTGCAGGATTTGGAGCTCCTTACGTTAATTCTTAGCAATTTTTACCTAAT
CATGTACCAGCTGAAATGGACAATAATTTCGATTAATCACATTTTCTAGATGGATAAATT
CGTCCAAGCTCTATTTCTTCTATTGATTATCAAATGCAGTCAAATTTACATTTATCTCAA
TACAATCATACTTCAATTCACCCTCATTCTCAATACACCACCAATGGCGGTAACAGCGGT
AATCTAACAAGCAGACACACCATTCACGGAAATCCTAATATGCAACCTAATAACACTCCA
TTCGAATCCAAAATTTATTACACAACTCAATAGCCTCAACAATAGCAAAATATTAATTAA
CGCAACACTATGTCTTAATAGCTTTACAGAGATTTGCAAAAGAAGGAATAAGTTTTATCG
CATCACATTAATTAAAATATGTAGCAAAATATGCAAAAATCCGCTCTTCTTCTATCACCT
TATTTCAATGTCACTCCTGGCATAAATAAGCCAGAGATGATAAACAATCCACCTCCTATT
TCCTTGAACAGTAGCACTAACAGGAGTCCTTCATCCACCTCTTACTCAATAAATAACAAC
AACTTAAATAATGCTAATCAAATATAATATGACTCTGATGTTGATGAAAATGTCTAAGTC
AGTTAACCTTCAGCATTCAGAACTAAGTATCGTGATGTCTAATTTTTCAATGGCAACTCC
AGCAACGTAGGCTATTTAGAAGATGTTGATCTTTAGTAATAGCAAATGGGAGCTGACTAA
GAGGCTAAAAAAGTTCTATTTGTTAGACATCTTGACTTTCCTGATTTAAAAATATCTATG
CTTTATAACCTTTTTAGCAATTATGGAAATATTGTGAAAATTATTTTCATGAAGCAGAAG
AGACAAGCTCTGATAGAATTCGAAGAAACTTCATAAGCAACCGCAGCCAAAGAAAATTTA
AACAACTTGCCATACTACAATGCTTAAATTAAAATAGATTACTCCAAATATGACCAAATA
GACCTCCAAAAGAAGAAACTTCATTCTGGAGAAAATAACGAACAAGAATAAGTCCTGTAA
ATCCCTCAATAATGCTTCAGATATAAAAATAAAAAGGGAATTCCGCAGTACGCTCCTAAA
AGCACTCTCCATGTTTCTAACATCAAAAAAGAATTCTTCGACTACAACCTAATTTAAGAT
TTCTTTTCTTCTTCAGGTGCAAAAATAAAGATGCTAAAACTCATTCCTAATGAAAAAAAG
TAAATGTGTCTAATTCAATTTGAAACCCTTGATGATGCTCTAAGAGTAATATCAACTTTC
CACGATACACCTTTCCATGGTAGAAACCTGTGCATTTCATTCACGAAGAGTGCAAACTCA
ATATAGTAAGCTCCTGGATAATAAAATAATATCAATACTAACTTCTCTAGCTCTAATAAC
ATGAGCAACAATTTAGAATAATAATAGTAAATACTTATGAAATAGCAATAACAAATGCAA
AATTAACAATATAATATCAACATTTTGAACTAAAATTAACTTCTTATTTAACAATAGCAA
TATTAGAATCCCTAATATGGTCAAAACAACACATTCTAAATCAATAACTTTGCCAATAAT
AACAACAATACTCATGGACTTGCTGCTCAACAGTCAACTTTGTTTGGTTACGATCTTAGT
GATAACAATTATCACCAATACTATGATGAATACAATGACAGTGATGAAGATCCTTAAGTG
ACTAATTCTATTTAGAACTTAGGTATTTGA