Identifiers and Description
Gene Model Identifier
TTHERM_00655870Standard Name
RRM39 (RNA recognition motif-containing protein 39)Aliases
PreTt03681 | 96.m00150Description
RRM39 polypyrimidine tract-binding proteinGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
No Data fetched for Gene Ontology Annotations
Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.1%
TetraMine Data
TTHERM_00655870
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_18022.1 9.997093137033517e-262 polypyrimidine tract-binding p
rotein (871 aa)
WormBase WBGene00004207 0.000000000010004361180063202 locus:ptb-1 status:Confirmed
UniProt:Q8T3E6 protein_id
:CAD30435.1
DictyBase DDB_G0284321 0.0000000029989608248573072 DDB_G0284321 on chromosome: 4
position 1760065 to 1764027
Oxytricha Contig511.0.0.g1 0.00000030014504373857585 RNA recognition motif_ (a_k_a_
RRM, RBD, or RNP domain)
SGD YIR009W 0.000030009396760408108 MSL1 U2B component of U2 snRNP
, involved in splicing, binds
the U2 snRNA stem-loop IV in v
itro but requires association
of Lea1p for in vivo binding;
does not contain the conserved
C-terminal RNA binding domain
found in other family members
General Information
No Data fetched for General Information
Associated Literature
No Data fetched for Associated Literature
Sequences
>TTHERM_00655870(coding)
ATGTCTTAGGCAAATAAACTTCAAAAATCGCAGCCTGTTCAAATATAATAGCACTTAAAC
GGAAATCAAGCCAAGCAATCGTTATCTTCAGTTATGCAGTAGCAGCAATAAAAAATAAGT
GCTTAAGAATAGTCTTTGAAAAATGAAGATTAGGCTATGCACAGAACCCACATGAAGGCT
AATACAATCGAAAATCTATCACCTGTGTTACTTGTAATTTTCAATACTAACGAAGCTAAG
ACAAACTAGGATCTCTTTGACATGTTTTCGTCTTATGTGAGAGTGATTCGTGTTTTAATA
TTTGAAAGAAAAGAAAATAATACAAAGTGCTTTGTCGAAATGATGACATAATCTGAGGCT
ACTTATGTAAAAAACTAAATTTCCTTCTAGAAGACTAAGAATTTGTTAAAAAATTTACAA
GTTTATTATGCTTAAATCTCAACAATCGACTTGTAAAACCATTATTCAGAAGGCTAAGAC
TTTACTAGCTTCTATGCAACTCATCCTAATTTCACTTGTTAATACATTTAGGAAACTTAA
TAATACTCTCAGAACCCTATTTTGTAAAACAGCACCATCAACCCCAAATTAAGCAGTCAA
GCAGCTTTTTAAAATAGCTTCTTAAACCCAGGCAAAAATAATGTTCAATAATCTATTAAC
AGTCCTTCAGCTTTTTATAACAATTATAACCCAAATAACTAAAGTTTTGCTGGTCCTGCT
AATAATAAAACTGCAGGATTTGGAGCTCCTTACGTTAATTCTTAGCAATTTTTACCTAAT
CATGTACCAGCTGAAATGGACAATAATTTCGATTAATCACATTTTCTAGATGGATAAATT
CGTCCAAGCTCTATTTCTTCTATTGATTATCAAATGCAGTCAAATTTACATTTATCTCAA
TACAATCATACTTCAATTCACCCTCATTCTCAATACACCACCAATGGCGGTAACAGCGGT
AATCTAACAAGCAGACACACCATTCACGGAAATCCTAATATGCAACCTAATAACACTCCA
TTCGAATCCAAAATTTATTACACAACTCAATAGCCTCAACAATAGCAAAATATTAATTAA
CGCAACACTATGTCTTAATAGCTTTACAGAGATTTGCAAAAGAAGGAATAAGTTTTATCG
CATCACATTAATTAAAATATGTAGCAAAATATGCAAAAATCCGCTCTTCTTCTATCACCT
TATTTCAATGTCACTCCTGGCATAAATAAGCCAGAGATGATAAACAATCCACCTCCTATT
TCCTTGAACAGTAGCACTAACAGGAGTCCTTCATCCACCTCTTACTCAATAAATAACAAC
AACTTAAATAATGCTAATCAAATATAATATGACTCTGATGTTGATGAAAATGTCTAAGTC
AGTTAACCTTCAGCATTCAGAACTAAGTATCGTGATGTCTAATTTTTCAATGGCAACTCC
AGCAACGTAGGCTATTTAGAAGATGTTGATCTTTAGTAATAGCAAATGGGAGCTGACTAA
GAGGCTAAAAAAGTTCTATTTGTTAGACATCTTGACTTTCCTGATTTAAAAATATCTATG
CTTTATAACCTTTTTAGCAATTATGGAAATATTGTGAAAATTATTTTCATGAAGCAGAAG
AGACAAGCTCTGATAGAATTCGAAGAAACTTCATAAGCAACCGCAGCCAAAGAAAATTTA
AACAACTTGCCATACTACAATGCTTAAATTAAAATAGATTACTCCAAATATGACCAAATA
GACCTCCAAAAGAAGAAACTTCATTCTGGAGAAAATAACGAACAAGAATAAGTCCTGTAA
ATCCCTCAATAATGCTTCAGATATAAAAATAAAAAGGGAATTCCGCAGTACGCTCCTAAA
AGCACTCTCCATGTTTCTAACATCAAAAAAGAATTCTTCGACTACAACCTAATTTAAGAT
TTCTTTTCTTCTTCAGGTGCAAAAATAAAGATGCTAAAACTCATTCCTAATGAAAAAAAG
TAAATGTGTCTAATTCAATTTGAAACCCTTGATGATGCTCTAAGAGTAATATCAACTTTC
CACGATACACCTTTCCATGGTAGAAACCTGTGCATTTCATTCACGAAGAGTGCAAACTCA
ATATAGTAAGCTCCTGGATAATAAAATAATATCAATACTAACTTCTCTAGCTCTAATAAC
ATGAGCAACAATTTAGAATAATAATAGTAAATACTTATGAAATAGCAATAACAAATGCAA
AATTAACAATATAATATCAACATTTTGAACTAAAATTAACTTCTTATTTAACAATAGCAA
TATTAGAATCCCTAATATGGTCAAAACAACACATTCTAAATCAATAACTTTGCCAATAAT
AACAACAATACTCATGGACTTGCTGCTCAACAGTCAACTTTGTTTGGTTACGATCTTAGT
GATAACAATTATCACCAATACTATGATGAATACAATGACAGTGATGAAGATCCTTAAGTG
ACTAATTCTATTTAGAACTTAGGTATTTGA>TTHERM_00655870(protein)
MSQANKLQKSQPVQIQQHLNGNQAKQSLSSVMQQQQQKISAQEQSLKNEDQAMHRTHMKA
NTIENLSPVLLVIFNTNEAKTNQDLFDMFSSYVRVIRVLIFERKENNTKCFVEMMTQSEA
TYVKNQISFQKTKNLLKNLQVYYAQISTIDLQNHYSEGQDFTSFYATHPNFTCQYIQETQ
QYSQNPILQNSTINPKLSSQAAFQNSFLNPGKNNVQQSINSPSAFYNNYNPNNQSFAGPA
NNKTAGFGAPYVNSQQFLPNHVPAEMDNNFDQSHFLDGQIRPSSISSIDYQMQSNLHLSQ
YNHTSIHPHSQYTTNGGNSGNLTSRHTIHGNPNMQPNNTPFESKIYYTTQQPQQQQNINQ
RNTMSQQLYRDLQKKEQVLSHHINQNMQQNMQKSALLLSPYFNVTPGINKPEMINNPPPI
SLNSSTNRSPSSTSYSINNNNLNNANQIQYDSDVDENVQVSQPSAFRTKYRDVQFFNGNS
SNVGYLEDVDLQQQQMGADQEAKKVLFVRHLDFPDLKISMLYNLFSNYGNIVKIIFMKQK
RQALIEFEETSQATAAKENLNNLPYYNAQIKIDYSKYDQIDLQKKKLHSGENNEQEQVLQ
IPQQCFRYKNKKGIPQYAPKSTLHVSNIKKEFFDYNLIQDFFSSSGAKIKMLKLIPNEKK
QMCLIQFETLDDALRVISTFHDTPFHGRNLCISFTKSANSIQQAPGQQNNINTNFSSSNN
MSNNLEQQQQILMKQQQQMQNQQYNINILNQNQLLIQQQQYQNPQYGQNNTFQINNFANN
NNNTHGLAAQQSTLFGYDLSDNNYHQYYDEYNDSDEDPQVTNSIQNLGI>TTHERM_00655870(gene)
ATGTCTTAGGCAAATAAACTTCAAAAATCGCAGCCTGTTCAAATATAATAGCACTTAAAC
GGAAATCAAGCCAAGCAATCGTTATCTTCAGTTATGCAGTAGCAGCAATAAAAAATAAGT
GCTTAAGAATAGTCTTTGAAAAATGAAGATTAGGCTATGCACAGAACCCACATGAAGGCT
AATACAATCGAAAATCTATCACCTGTGTTACTTGTAATTTTCAATACTAACGAAGCTAAG
ACAAACTAGGATCTCTTTGACATGTTTTCGTCTTATGTGAGAGTGATTCGTGTTTTAATA
TTTGAAAGAAAAGAAAATAATACAAAGTGCTTTGTCGAAATGATGACATAATCTGAGGCT
ACTTATGTAAAAAACTAAATTTCCTTCTAGAAGACTAAGAATTTGTTAAAAAATTTACAA
GTTTATTATGCTTAAATCTCAACAATCGACTTGTAAAACCATTATTCAGAAGGCTAAGAC
TTTACTAGCTTCTATGCAACTCATCCTAATTTCACTTGTTAATACATTTAGGAAACTTAA
TAATACTCTCAGAACCCTATTTTGTAAAACAGCACCATCAACCCCAAATTAAGCAGTCAA
GCAGCTTTTTAAAATAGCTTCTTAAACCCAGGCAAAAATAATGTTCAATAATCTATTAAC
AGTCCTTCAGCTTTTTATAACAATTATAACCCAAATAACTAAAGTTTTGCTGGTCCTGCT
AATAATAAAACTGCAGGATTTGGAGCTCCTTACGTTAATTCTTAGCAATTTTTACCTAAT
CATGTACCAGCTGAAATGGACAATAATTTCGATTAATCACATTTTCTAGATGGATAAATT
CGTCCAAGCTCTATTTCTTCTATTGATTATCAAATGCAGTCAAATTTACATTTATCTCAA
TACAATCATACTTCAATTCACCCTCATTCTCAATACACCACCAATGGCGGTAACAGCGGT
AATCTAACAAGCAGACACACCATTCACGGAAATCCTAATATGCAACCTAATAACACTCCA
TTCGAATCCAAAATTTATTACACAACTCAATAGCCTCAACAATAGCAAAATATTAATTAA
CGCAACACTATGTCTTAATAGCTTTACAGAGATTTGCAAAAGAAGGAATAAGTTTTATCG
CATCACATTAATTAAAATATGTAGCAAAATATGCAAAAATCCGCTCTTCTTCTATCACCT
TATTTCAATGTCACTCCTGGCATAAATAAGCCAGAGATGATAAACAATCCACCTCCTATT
TCCTTGAACAGTAGCACTAACAGGAGTCCTTCATCCACCTCTTACTCAATAAATAACAAC
AACTTAAATAATGCTAATCAAATATAATATGACTCTGATGTTGATGAAAATGTCTAAGTC
AGTTAACCTTCAGCATTCAGAACTAAGTATCGTGATGTCTAATTTTTCAATGGCAACTCC
AGCAACGTAGGCTATTTAGAAGATGTTGATCTTTAGTAATAGCAAATGGGAGCTGACTAA
GAGGCTAAAAAAGTTCTATTTGTTAGACATCTTGACTTTCCTGATTTAAAAATATCTATG
CTTTATAACCTTTTTAGCAATTATGGAAATATTGTGAAAATTATTTTCATGAAGCAGAAG
AGACAAGCTCTGATAGAATTCGAAGAAACTTCATAAGCAACCGCAGCCAAAGAAAATTTA
AACAACTTGCCATACTACAATGCTTAAATTAAAATAGATTACTCCAAATATGACCAAATA
GACCTCCAAAAGAAGAAACTTCATTCTGGAGAAAATAACGAACAAGAATAAGTCCTGTAA
ATCCCTCAATAATGCTTCAGATATAAAAATAAAAAGGGAATTCCGCAGTACGCTCCTAAA
AGCACTCTCCATGTTTCTAACATCAAAAAAGAATTCTTCGACTACAACCTAATTTAAGAT
TTCTTTTCTTCTTCAGGTGCAAAAATAAAGATGCTAAAACTCATTCCTAATGAAAAAAAG
TAAATGTGTCTAATTCAATTTGAAACCCTTGATGATGCTCTAAGAGTAATATCAACTTTC
CACGATACACCTTTCCATGGTAGAAACCTGTGCATTTCATTCACGAAGAGTGCAAACTCA
ATATAGTAAGCTCCTGGATAATAAAATAATATCAATACTAACTTCTCTAGCTCTAATAAC
ATGAGCAACAATTTAGAATAATAATAGTAAATACTTATGAAATAGCAATAACAAATGCAA
AATTAACAATATAATATCAACATTTTGAACTAAAATTAACTTCTTATTTAACAATAGCAA
TATTAGAATCCCTAATATGGTCAAAACAACACATTCTAAATCAATAACTTTGCCAATAAT
AACAACAATACTCATGGACTTGCTGCTCAACAGTCAACTTTGTTTGGTTACGATCTTAGT
GATAACAATTATCACCAATACTATGATGAATACAATGACAGTGATGAAGATCCTTAAGTG
ACTAATTCTATTTAGAACTTAGGTATTTGA