Identifiers and Description

Gene Model Identifier

TTHERM_00421000

Standard Name

RRM18 (RNA Recognition Motif-containing protein 18)

Aliases

PreTt07225 | 46.m00280 | 3679.m00130

Description

RNA recognition motif-containing protein; 2014 reannotation incorporated RRM19 (TTHERM_00421010) into this gene model

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF08777 ) RNA binding motif
• ( TIGR01661 ) ELAV/HuD family splicing factor
• ( TIGR01622 ) splicing factor, CC1-like family
• ( TIGR01659 ) sex-lethal family splicing factor
• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,
• ( TIGR01628 ) polyadenylate binding protein, human types

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.2%

TetraMine Data

TTHERM_00421000

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_10974.1	9.997093137033517e-262	hypothetical protein (307 aa)
DictyBase	DDB_G0270634	2.9990874792167046e-33	DDB_G0270634 on chromosome: 1 position 3530459 to 3532109
WormBase	WBGene00006807	8.999890565246037e-26	locus:unc-75 status:Confirme d UniProt:G5EE68 protein_i d:CAB03896.4
Oxytricha	Contig18677.0.g10	9.997019043202629e-21	RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
SGD	YER165W	3.001003044337619e-17	PAB1 Poly(A) binding protein, part of the 3-end RNA-processi ng complex, mediates interacti ons between the 5 cap structur e and the 3 mRNA poly(A) tail, involved in control of poly(A ) tail length, interacts with translation factor eIF-4G
Stentor Coeruleus	SteCoe_20459	6.305116760146989e-16

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00421000(coding)
ATGAATACCAACGAATACATAGACTAATTCGATTAAAATAAAAATATGGGAGCTTATTAC
GATAGCAATGGTTATGCTATGTAAAACTAGTAATAAATGGATTAAACCTACCAAAACCCT
CAAAACGAAATTAAGGAAGGTGGTGATCTACTTAAAATTAACAATACTTAAATTTTGATC
CGTAGATAGGAAAATACAGTCGATTTAAAACTCTTTGTCGGTTAACTACCAAAGACATGG
GAAAAAGAGCAAGTTAAAGATTTCTTTTCTAAATTCGGCAGAATTTATGAAGTTTAGATT
ATTAGAGACAATAAGGGATAACACAAGGGTTGCGCTTTTGTTAAATTTGCTTCAATGACT
GACGCAGAAAAAGCTATTGAAGCTGTAAAAAACACCACCTTTCCAGGAATGAAGAATAAC
GTTGAAATTAAATGGGCTGACAACGAAGAAGAAAGACTTGGTGTCAACTAAGACTCTGAC
CATAAATTATTTATTGGTTCTCTTCCTAAGTCTTGCACTGAATAAAATATTAAAGATATC
TTTGAATTTTTTGGTGAAATTGAAGAATTACACCTTATGAAGGATAACTAGTAAAACACA
AGATAAGCATTTTTAAAATTCAAACAAAAAGAAAAAGCTCACCTTGCTATCAGAAACTTA
AACTCTCAAGTCTACATCAATGATGCTGAAAATCCAATTGAAGTTAGATTCGCTAAGAAA
TATGTTAAGCAAGAAAAGCCAAATCCTACTCCAGCTCCTAAACCTGACCCTGCTCCTGCT
CCTTAGCAAATCAGCTGGTAAAAAGTATACTTCAAATACTACACTGAAGAGAATGAACCT
TACTACTTCCATCCTCTTCTAAATACTAGTGCCTTTGACAAACCTGGTCCTGGAAGCTTG
ATTTTAGATATTGATGGAAATCAAGAATACATAGATAACAACCCTAGACCTACAAGAAAC
GAACCTGTTGTTATTAATGATAGAAAGGATGTTTATGGCAAAAAGCATGGACCTCCTGGA
GCCAATCTTTTTATATTCCACTTGCCCAATGACTACAGAGATTCCGATTTAGAAAAACTC
TTTTCAGAATATGGTGAGGTAATTTCTGCTAGAGTCAATACAAGACCTGATGGAACAAGC
AAAGGATTTGGTTTCATTAGTTATAACCACCCATCTTAGGCAGAGGCTGCAATCACTGCT
CTCAACGGACTCTAGATTAAAAATAAGAGACTAAAAGTTGAAATAAAAAAAGAAGGAATG
GATAACAATGGAAACATGAAGCAATCCAACCCTGGATCTTTAAACCAAACTTCTTTCCAT
CCATTCTGA

>TTHERM_00421000(protein)
MNTNEYIDQFDQNKNMGAYYDSNGYAMQNQQQMDQTYQNPQNEIKEGGDLLKINNTQILI
RRQENTVDLKLFVGQLPKTWEKEQVKDFFSKFGRIYEVQIIRDNKGQHKGCAFVKFASMT
DAEKAIEAVKNTTFPGMKNNVEIKWADNEEERLGVNQDSDHKLFIGSLPKSCTEQNIKDI
FEFFGEIEELHLMKDNQQNTRQAFLKFKQKEKAHLAIRNLNSQVYINDAENPIEVRFAKK
YVKQEKPNPTPAPKPDPAPAPQQISWQKVYFKYYTEENEPYYFHPLLNTSAFDKPGPGSL
ILDIDGNQEYIDNNPRPTRNEPVVINDRKDVYGKKHGPPGANLFIFHLPNDYRDSDLEKL
FSEYGEVISARVNTRPDGTSKGFGFISYNHPSQAEAAITALNGLQIKNKRLKVEIKKEGM
DNNGNMKQSNPGSLNQTSFHPF

>TTHERM_00421000(gene)
TTTTTATCTTGGCTACCAGGCAAAAGAAAAATCATATAAATAATTAAAATTAGAAAGAGT
TAATATCAAAAATCTTATTATAAAGAGCAAGTTTTGAATATAAGTAAAACAGACATAAGA
GATAAAATGAATACCAACGAATACATAGACTAATTCGATTGTAAATAATGAAATTAAAAA
AAAATTTCTAACTTTAATTTACTTAACCTATGAGGAGAATTATCTTAAATATGTTTTATA
ATTATCAAATTACATAGAAAATAAAAATATGGGAGCTTATTACGATAGCAATGGTTATGC
TATGTAAAACTAGTAATAAATGGATTAAACCTACCAAAACCCTCAAAACGAAATTAAGGA
AGGTGGTGATCTACTTAAAATTAACAATGTAAATTACTTAGCACTTTAATTTCTCTTTAT
TTATTTTAATGGACTGTATGATAGAATTATAATAACACACACACACATTAAAATCTTAAT
AAGAAAAAAATAATGATCATATAGACCATCTTACAAATAAAAAACTGAGAATAATTTTAT
TATTTTTAATTAAATAGACTTAAATTTTGATCCGTAGATAGGAAAATACAGTCGATTTAA
AACTCTTTGTCGGTTAACTACCAAAGACATGGTAAAAATAAAATTAGTAAAAGTTAAGTA
TTTATTGACTCAATTTTTAAATAGGGAAAAAGAGCAAGTTAAAGATTTCTTTTCTAAATT
CGGCAGAATTTATGAAGTTTAGATTATTAGAGACAATAAGGGATAACACAAGGGTTGCGC
TTTTGTTAAATTTGCTTCAATGACTGACGCAGAAAAAGCTATTGAAGCTGTAAAAAACAC
CACCTTTCCAGGAGTAAATATTAATAAAATAGATTTTTAGACAAATTTATTTATTCTTAT
AAAATTAACTAGCAATATATATCTATCTATCTATACATTTATACATCTATTAATTCATTA
ATTTCTTAATTAATTTTCTTTTAAATTTTTAATTTCATTAGATGAAGAATAACGTTGAAA
TTAAATGGGCTGACAACGAAGAAGAAAGACTTGGTGTCAACTAAGACTCTGACCATAAAT
TATTTATTGGTTCTCTTCCTAAGTCTTGCACTGAAGTAATAAAATTTAGGACTAAGATTT
AAGGTTTTTAAATATAATATTTTAATAGTAAAATATTAAAGATATCTTTGAATTTTTTGG
TGAAATTGAAGAATTACACCTTATGAAGGATAACTAGTAAAACACAAGATAAGCATTTTT
AAAATTCAAACAAAAAGAAAAAGCTCACCTTGCTATCAGAAACTTAAACTCTCAAGTCTA
CATCAATGATGCTGAAAATCCAATTGAAGTTAGATTCGCTAAGAAATATGTTAAGCAAGA
AAAGCCAGTAAAATTTTTTATTTAAAATATTTTTTATTTTAGTGATCAAAGCGGCTTAAA
GATTGCCGAATAAGGGTGGGTTTGATTGATCATGTGAAAAGGTAAGTTAAAAAAAAGTAA
TAAGGAAATTTTATTTGTTTATTGATGGATAAAATTGGTTAGCCTTGTGAAATTCTAAAT
CTAAGTTCTAGATAGATAAATGATCAATCTTTGAATCATAATAAGATAACTAAAAGTGAG
GGCATCATTAATAACAATCAATCAAGCAAGTAAGCAGCAAGCAAACAAAAAAAAACACAA
CAGAAAATAGAATCAAAGTCTAACATTAGAAAGAAAGAAATCAAATTAACAAAATAACTA
AGTAACTAAGTTACTAACTAACTAACTAACTAACTAATTAACTAATAACAATCAAACAAC
TGATCAACCAAAAAATTAGAGAGGATGAAGTAGATTGAAACGAAAAAGAGATGAATCTCG
TCTTATTAGAAATAAAATAAAAGCAAGTTATCTATAATTAATAGAATAAATTAATAAATA
ATTAAAATATTATTATGAGTAAGTAGTCTACATAATCTAATAGTAAGTATGTGATCGCAT
GTATCGTGTAAATTAATGTTGTAGTTGTTGTTTAAATAATAAAATAGTAATAAATTATGT
TGTTGTTATTGATGTTCCATCTTGTTATAATTACTTAAAAGCTAAATTATCAAAATCCCT
GTTTACTAACAAACAAACAAACTAATTAACTAATAAGATCATATATCATCTATCTATCTA
TCTCAATCAATCATAAACAAACTACTTAAACACATGCATCAATCGATTTGTCTAATAGTT
ATATATTATCTATTCAACAAAAAAAAAATAAAAGCAATTTTACAGCTTTTCAAACCAATT
CTTTTAATATTTTCATTTATCAAACTAAATTTAAAATTCAAAAATAAATAAAAACTTTAT
TTTTTTAAATACAGAATCCTACTCCAGCTCCTAAACCTGACCCTGCTCCTGCTCCTTAGC
AAATCAGCGTAAGGATATTTAATCAAAAAATTTAATTTTTAAGTTTTAAAATTTAAAATT
TAGTGGTAAAAAGTATACTTCAAATACTACACTGAAGAGAATGAACCTTACTACTTCCAT
CCTCTTCTAAATACTAGTGCCTTTGACAAACCTGGTCCTGGAAGCTTGATTTTAGATATT
GATGGAAATCAAGAATACATAGATAACAACCCTAGACCTACAAGAAACGAACCTGTTGTT
ATTAATGATAGAAAGGATGTTTGTAAATATATTTCAAAATTTTAAATTAATAAAATAAAA
ATTAAAAAATTAATTCACTTCCTAAAATAAAACATTTCATTTTTTATTTTTTTTAAACTT
ACTTTTTAAACTAAATATTAAATTATTTTTATTAAAATAGATGGTAAAATATTATTTAGA
TGATTCTGATTGCACAACATAGTTTTTATTTACAAGCTAATTATCTAAATCATTTATTTT
ACTTTTTTCTATTAAAATTAATAGATGGCAAAAAGCATGGACCTCCTGGAGCCAATCTTT
TTATATTCCACTTGCCCAATGACTACAGAGATTCCGATTTAGAAAAACTCTTTTCAGAAT
ATGGTGAGGTAATTTCTGCTAGAGTCAATACAAGACCTGATGGAACAAGCAAAGGATTTG
GTAAATATTGAAGCTCTTTAAGTTAATTTTTAATGCTTAAATTATTTTAGGTTTCATTAG
TTATAACCACCCATCTTAGGCAGAGGCTGCAATCACTGCTCTCAACGGACTCTAGATTAA
AAGTAAATAAAATATTAGAGTAAATATAAAATATAAATAAATTTTAATATAAATAGATAA
GAGACTAAAAGTTGAAATAAAAAAAGAAGGAATGGATAACAATGGAAACATGAAGCAATC
CAACCCTGGATCTTTAAACCAAACTTCTTTCCATCCATTCTGA