Identifiers and Description
Gene Model Identifier
TTHERM_00469100
Standard Name
RPT4 (26S proteasome regulatory subunit T4)
Aliases
PreTt18712 | 55.m00267 | 3710.m00115
Description
RPT4 26S proteasome regulatory ATPase subunit 10B
Genome Browser (Macronucleus)
Genome Browser (Micronucleus)
Gene Ontology Annotations
Cellular Component
Domains
( PF00004 ) ATPase, AAA family
( PF00158 ) Sigma-54 interaction domain
( TIGR02902 ) ATP-dependent protease LonB
( TIGR02881 ) stage V sporulation protein K
( TIGR01242 ) 26S proteasome subunit P45 family
( TIGR01552 ) prevent-host-death family protein
( TIGR00635 ) Holliday junction DNA helicase RuvB
( TIGR01241 ) ATP-dependent metallopeptidase HflB
( TIGR00382 ) ATP-dependent Clp protease, ATP-binding subunit
( PF07724 ) ATPase family associated with various
( PF07726 ) ATPase family associated with various
( PF07728 ) ATPase family associated with various
Gene Expression Profile
Tetrahymena Functional Genomics Database:
Change in Gene Expression
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 9.8%
TetraMine Data
TTHERM_00469100
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description
Stentor Coeruleus SteCoe_35537 0
WormBase WBGene00004504 9.997093137033517e-262 locus:rpt-4 Probable 26S pro
tease regulatory subunit 10B
status:Confirmed UniProt:O1
7071 protein_id:CCD62358.1
Tetrahymena borealis EI9_15684.1 9.997093137033517e-262 26S proteasome subunit P45 fam
ily protein (391 aa)
Oxytricha Contig10954.0.g62 9.997093137033517e-262 ATPase family associated with
various cellular activities (A
AA)
SGD YOR259C 8.000959403653794e-177 RPT4 One of six ATPases of the
19S regulatory particle of th
e 26S proteasome involved in d
egradation of ubiquitinated su
bstrates; contributes preferen
tially to ERAD; required for s
pindle pole body duplication;
mainly nuclear localization
DictyBase DDB_G0284517 4.997692805068281e-176 psmC6 on chromosome: 4 positio
n 2090141 to 2091556
General Information
No Data fetched for General Information
Associated Literature
Ref:21637855 : Xiong J, Yuan D, Fillingham JS, Garg J, Lu X, Chang Y, Liu Y, Fu C, Pearlman RE, Miao W (2011) Gene network landscape of the ciliate Tetrahymena thermophila. PloS one 6(5):e20124
Sequences
>TTHERM_00469100(coding)ATG GCT TCA ACT GAT AAT CCA GTA GTT TAA AAT TAC CTT AGA GTT AAG CGT GAA CAT GAG AAG ATG GAA ATC GAT TTA AAA AAG CAA AGA TTC AAC TTA CGT GAC TTG AAT AAG CAA TTA GAT AAA ACT GAT GAT TAG CTT AAG GCT ATC TAA AGT GTA GGA TAA CCA ATT GGT GAA GTT TTA AAG CAA ATT AAT GAA GAA AAA TAC ATT GTT AAA TCA TCA AGT GGC CCT AGA TAC GTA GTT GGT GTT AAA TCT AAA ATT AAT AGA GAA AAG CTT GTT ATT GGA GCT AGA GTA GCA TTA GAT TAG AAT ACT TAT ACT ATT GTT AGA ATC TTG CCT AGA GAA GTA GAT CCT ATG GTA TAT CAT ATG TTA CAT GAA GAT CCA GGT AAA GTT ACC TTT GAC GAT GTC GGT GGT TTA GAT GAC TAA ATT AGA ACT CTT AGA GAA ACT ATT GAG TTA CCA ATC ACA AAT CCA GAA TTG TTT AGA AGA GTA GGT GTT AAG CCT CCT AAA GGT TGT TTG ATG TAT GGA CCT CCT GGT ACT GGT AAA ACT TTA ATT GCA AGA GCT CTT GCC AAT AAT GTT GAT GCA AAA TTC TTA AAG GTT GTA GCA TCA GGT ATA GTA GAT AAA TAT ATT GGT GAA TCT GCA AGA GTT ATT CGT GAA ATG TTC GCT TTT GCA AGA GAG CAC GAA CCA TGC ATT ATA TTT ATG GAT GAA ATC GAT GCT ATT GGT GGT CGT AGA TTT TCA GAA GGT TCT TCT GCT GAT AGA GAA ATC CAA AGA ACT TTG ATG GAA CTT CTA AAT CAA ATT GAT GGT TTT GAT GAT TTA AAG AGA GTC AAG ATT GTT ATG GCC ACA AAT AGA CCC GAT GTG CTT GAT CCT GCA CTT ATG AGA CCA GGT CGT TTA GAT AGA AAA GTA GAA ATT CCC TTA CCT AAT GAA TAG GCC CGT GCA AAA ATT TTA GGC ATT CAT ATG AAA ACT ATT ACT ATA TTA GGT GAA GTA ACT TAT ATT GAA GAA CTT GCC AAG CTT ACA GAA GAT TTC AAT GGA GCT GAT TTA CGT AAC GTA TGT ACA GAA GCA GGT ATG TTT GCT ATT AGA GCT GGT AGA GAT TAT GTC ATT TAA GAA GAT TTC TTC AAG GCT GCT AGA AAG ATA AAA GAA TCT AAA AAA TTA GAA TCT AAG TTA GAT TAC AGC AAA GTT TGA >TTHERM_00469100(protein)M A S T D N P V V Q N Y L R V K R E H E K M E I D L K K Q R F N L R D L N K Q L D K T D D Q L K A I Q S V G Q P I G E V L K Q I N E E K Y I V K S S S G P R Y V V G V K S K I N R E K L V I G A R V A L D Q N T Y T I V R I L P R E V D P M V Y H M L H E D P G K V T F D D V G G L D D Q I R T L R E T I E L P I T N P E L F R R V G V K P P K G C L M Y G P P G T G K T L I A R A L A N N V D A K F L K V V A S G I V D K Y I G E S A R V I R E M F A F A R E H E P C I I F M D E I D A I G G R R F S E G S S A D R E I Q R T L M E L L N Q I D G F D D L K R V K I V M A T N R P D V L D P A L M R P G R L D R K V E I P L P N E Q A R A K I L G I H M K T I T I L G E V T Y I E E L A K L T E D F N G A D L R N V C T E A G M F A I R A G R D Y V I Q E D F F K A A R K I K E S K K L E S K L D Y S K V >TTHERM_00469100(gene)ATG GCT TCA ACT GAT AAT CCA GTA GTT TAA AAT TAC CTT AGA GTT AAG CGT GAA CAT GAG AAG ATG GAA ATC GAT TTA AAA AAG CGT AAT AAT TCT AAT TTT ATT TAT TTA AGT TCA AAG GCA CTT TAT TCA ATC ATT ACA TAT TAA GAT TGC TTA ATT AAT CAA TAT TGA TTA AGA CTT CAA ATG AGT GAT TTA TTA AAT ATA AAA AAT TAT TTT TAT AAA TGA ATA TAG AAA GAT TCA ACT TAC GTG ACT TGA ATA AGC AAT TAG ATA AAA CTG ATG ATT AGC TTA AGG CTA TCT AAA GTG TAG GAT AAC CAA TTG GTG AAG TTT TAA AGC AAA TTA ATG AAG AAA AAT GTA AAT CTT TAT TAG TTT TGT TTC TTT ATG GCA GAT CAA AAA AGG TTA TGT GAC AAT AAT TTT AAA CAA ATA TGA GTG ACT GGC CTT TTT TCC TTC ATT TTG ATG AGC TAT TAT CCT TAA AAT TAT ATA AAC ATA TTA TTT TAT TTA TAG ACA TTG TTA AAT CAT CAA GTG GCC CTA GAT ACG TAG TTG GTG TTA AAT CTA AAA TTA ATA GAG AAA AGC TTG TTA TTG GTA AAG AAT CAA TTT TTT GAA TTT AAA ATA TTT TGT TAA GTT AGT TGA TGG CTC CTT ATT AAC AAA TAT TAT TGT TGT TTA TTA TTA TAG GAG CTA GAG TAG CAT TAG ATT AGA ATA CTT ATA CTA TTG TTA GAA TCT TGC CTA GAG AAG TAG ATC CTA TGG TAT ATC ATA TGT TAC ATG AAG ATC CAG GTA AAG TTA CCT TTG ACG ATG TCG GTG GTT TAG ATG ACT AAA TTA GAA CTC TTA GAG AAG TAA TTT ATA TAT TTA TTT CTA TTA ATA GAG TTT TTA GTA TGC CTC ATT TAA TAA TAA ATA AAT AAT TAA ATA GTT TAA CCA TTT TAA GCT TTA GCA TTT TAT TAC ACA CTT ACT TAA TTA GGA AAT AAA TAA CTC CAA ACA AAT TTT AAT GGA AGA AGA AAA ATA GAT TAT TTA TTT ATA ATT AGA ATG CTT ATT AAA ATT TCA ATA AAA TAA TAA TAA TTA AAA TTT ATT AAT TAG ACT ATT GAG TTA CCA ATC ACA AAT CCA GAA TTG TTT AGA AGA GTA GGT GTT AAG CCT CCT AAA GTA ATA TTT AGT TAA AAT AAG TTA TGA GTC CTA ATT AAA TTA TTC TTA TTA GGG TTG TTT GAT GTA TGG ACC TCC TGG TAC TGG TAA AAC TTT AAT TGC AAG AGC TCT TGC CAA TAA TGT TGA TGC AAA ATT CTT AAA GGT TGT AGC ATC AGG TAT AGT AGA TAA ATA TAT TGG TGA ATC TGC AAG AGT TAT TCG TGA AAT GTT CGC TTT TGC AAG AGA GCA CGA ACC ATG CAT TAT ATT TAT GGA TGA AAT CGA TGC TAT TGG TGG TCG TAG ATT TTC AGA AGG TTC TTC TGC TGA TAG AGA AAT CCA AAG AAC TTT GAT GGA AGT AAA AAA AAA TTC ATT GTT TAA AAT TAG AAA TTT AAT TTA ATA AAA TTA ATT TAA AAA AAT AGC TTC TAA ATC AAA TTG ATG GTT TTG ATG ATT TAA AGA GAG TCA AGA TTG TTA TGG CCA CAA ATA GAC CCG ATG TGC TTG ATC CTG CAC TTA TGA GAC CAG GTC GTT TAG ATA GAA AAG TAG AAA TTC CCT TAC CTA ATG AAT AGG CCC GTG CAA AAA TTT TAG GCA TTC ATA TGA AAA CTA TTA CTA TAT TAG GTG AAG TAA CTT ATA TTG AAG AAC TTG CCA AGC TTA CAG AAG ATT TCA ATG GAG CTG ATT TAC GTA ACG TAT GTA CAG AAG CAG GTA AAA TAA AAA TAA TAA ATG ATA AAC CTA GTT TAA AAT GAA TAT TAT TGA AAT AAA AAT ATA GGT ATG TTT GCT ATT AGA GCT GGT AGA GAT TAT GTC ATT TAA GAA GAT TTC TTC AAG GCT GCT AGA AAG ATA AAA GAA TCT AAA AAA TTA GAA TCT AAG TTA GAT TAC AGC AAA GTT TGA