Identifiers and Description

Gene Model Identifier

TTHERM_00131110

Standard Name

RPS18 (Ribosomal Protein of the Small subunit 18)

Aliases

PreTt24232 | 10.m00281 | 3698.m00005

Description

Homolog of yeast RPS18, human RPS18, bacterial RPS13

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840
• intracellular (IEA) | GO:0005622

Molecular Function

• RNA binding (IEA) | GO:0003723
• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00633 ) Helix-hairpin-helix motif
• ( PF00416 ) ribosomal protein S13p/S18e

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.7%

TetraMine Data

TTHERM_00131110

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_05676.1	1.0003602942354155e-110	ribosomal protein S13p/S18e co ntaining protein (214 aa)
WormBase	WBGene00004487	9.999353957415832e-59	locus:rps-18 status:Confirme d UniProt:O18240 protein_i d:CAB16517.1
SGD	YML026C	1.0000099287337047e-53	RPS18B Protein component of th e small (40S) ribosomal subuni t; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal pro teins
Oxytricha	Contig19625.0.g104	4.999934616708877e-52	Ribosomal protein S13/S18
DictyBase	DDB_G0276415	2.000214949834694e-50	rps18 on chromosome: 2 positio n 6891141 to 6891920
Stentor Coeruleus	SteCoe_37993	3.532628572200807e-24

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_00131110(coding)
ATGTCCTTCGTTATCGAAAAAGAATCTGACTTCAAGTACATCCATCGTATCCTCAACACC
AACATCGATGGTAAAAGAATCACCCCTATTGCCTTAACCGGTATTAGAGGTATCGGCAGA
AGATTCGCTTACATCATCTGCAAGGTTTTGAAGATCGATCCCAACGCCAGAGCTGGTTTA
TTAACCGAAGATTAATGCAACAAGATTACCGATCTCATCGCTGATCCCGAAGCTCACGGT
ATCCCCACCTGGTTGCTCAACAGAATTAATGATTTCAAGGATGGTAAAAACTACCAAATG
GCTTCTAACACCTTAGATACCAAGATGAGAGAAGATCTTGAAAGACTCAAGAAAATTAAG
TCTCACAGAGGTCTTAGACATTTCTGGGGTCTCAAGGTTAGAGGTCAACACACCAAGACC
AGTGGTAGACACGGTGTCGTTTGCGGTGTTGTCAGAAAGAACAAATGA

>TTHERM_00131110(protein)
MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL
LTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK
SHRGLRHFWGLKVRGQHTKTSGRHGVVCGVVRKNK

>TTHERM_00131110(gene)
ATGTCCTTCGTTATCGAAAAAGAATCTGACTTCAAGTACATCCATCGTATCCTCAACACC
AACATCGATGGTAAAAGAATCACCCCTATTGCCTTAACCGGTATTAGAGGTATCGGCAGA
AGATTCGCTTACATCATCTGCAAGGTTTTGAAGATCGATCCCAACGCCAGAGCTGGTTTA
TTAACCGAAGATTAATGCAACAAGATTACCGATCTCATCGCTGATCCCGAAGCTCACGGT
ATCCCCACCTGGTTGCTCAACAGAATTAATGATTTCAAGGATGGTAAAAACTACCAAATG
GCTTCTAACACCTTAGATACCAAGATGAGAGAAGATCTTGAAAGACTCAAGAAAATTAAG
TCTCACAGAGGTCTTAGACATTTCTGGGGTCTCAAGGTTAGAGGTCAACACACCAAGACC
AGTGGTAGACACGGTGTCGTTTGCGGTGTTGTCAGAAAGAACAAATGA