Identifiers and Description

Gene Model Identifier

TTHERM_00762890

Standard Name

RPS17 (Ribosomal Protein of the Small subunit 17)

Aliases

PreTt03280 | 126.m00078 | 3740.m00005

Description

Homolog of yeast RPS17, human RPS17

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840
• intracellular (IEA) | GO:0005622

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00833 ) ribosomal S17

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.2%

TetraMine Data

TTHERM_00762890

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_16004.1	3.001096210761825e-82	ribosomal S17 family protein ( 129 aa)
Oxytricha	Contig1018.1.g95	2.9989272749380808e-50	Ribosomal S17
SGD	YML024W	8.001824328206442e-49	RPS17A Ribosomal protein 51 (r p51) of the small (40s) subuni t; nearly identical to Rps17Bp and has similarity to rat S17 ribosomal protein
WormBase	WBGene00004486	7.000028900755185e-46	locus:rps-17 40S ribosomal p rotein S17 status:Confirmed UniProt:O01692 protein_id: CCD67616.1
DictyBase	DDB_G0290141	1.0003292389192957e-45	rps17 on chromosome: 5 positio n 3706333 to 3707026
Stentor Coeruleus	SteCoe_37162	7.095474162284704e-23

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_00762890(coding)
ATGGGTAGAGTTAGAACTAAAACTGTTAAGAGAGCCGCCAAGAGCTTGATTGAACATTAC
TACAGCAAGTTAACCAACGATTTCCACTTCAATAAGAAGATCCTTTCCGAAGTCGCTCAA
GTCCCCTCCAAGAGACTTAGAAACAAGATCGCTGGTTTCGCTACTCACTTGATGAAGAGA
ATCCAAAAGGGTCCCGTCAGAGGTATTTCTCTCAAGGTCTAAGAAGAAGAAAGAGAAAGA
AGACTTGACTACGTCCCCGAAAAGTCTATTATTGATATTGAAAAGGTTACCATTGATAAC
GAAACCAAGGAAATGCTCAAAAAGCTTGGTTACTAAAACATCCCTGGTCTTGTTAGCGCT
TCCGCTCCTGCCAACAAGAAGAGAGGATAATGA

>TTHERM_00762890(protein)
MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKR
IQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSA
SAPANKKRGQ

>TTHERM_00762890(gene)
ATGGGTAGAGTTAGAACTAAAACTGTTAAGAGAGCCGCCAAGAGCTTGATTGAACATTAC
TACAGCAAGTTAACCAACGATTTCCACTTCAATAAGAAGATCCTTTCCGAAGTCGCTCAA
GTCCCCTCCAAGAGACTTAGAAACAAGATCGCTGGTTTCGCTACTCACTTGATGAAGAGA
ATCCAAAAGGGTCCCGTCAGAGGTATTTCTCTCAAGGTCTAAGAAGAAGAAAGAGAAAGA
AGACTTGACTACGTCCCCGAAAAGTCTATTATTGATATTGAAAAGGTTACCATTGATAAC
GAAACCAAGGAAATGCTCAAAAAGCTTGGTTACTAAAACATCCCTGGTCTTGTTAGCGCT
TCCGCTCCTGCCAACAAGAAGAGAGGATAATGA