Identifiers and Description

Gene Model Identifier

TTHERM_00706300

Standard Name

RPS16 (Ribosomal Protein of the Small subunit 16)

Aliases

PreTt26886 | 111.m00107 | 3744.m00027

Description

Homolog of yeast RPS16, human RPS16, bacterial RPS9;

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840
• intracellular (IEA) | GO:0005622

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00380 ) ribosomal protein S9

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.6%

TetraMine Data

TTHERM_00706300

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_17730.1	7.001881202137212e-149	ribosomal protein S9 containin g protein (225 aa)
SGD	YMR143W	4.997966074691795e-65	RPS16A Protein component of th e small (40S) ribosomal subuni t; identical to Rps16Bp and ha s similarity to E. coli S9 and rat S16 ribosomal proteins
DictyBase	DDB_G0284093	5.0012639607461234e-61	rps16 on chromosome: 4 positio n 1558362 to 1559293
WormBase	WBGene00004485	4.000223764421475e-57	locus:rps-16 40S ribosomal p rotein S16 status:Confirmed UniProt:Q22054 protein_id: CAB01658.1
Oxytricha	Contig21935.0.g16	6.997794455893953e-54	Ribosomal protein S9/S16
Stentor Coeruleus	SteCoe_8987	3.221340285992516e-27

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_00706300(coding)
ATGAAATATAATAATTCTTAGCAAAATAGAATGAAAAAAGATGAGAGAACTACTAAGTTT
AATAAAGACTAAATTAATTAAGGCGAATTAATTTTTAGATAGGAAGGAAAGGATAATAAA
AAGTAAAAGGGAAAAATAAAGGACTAATTCAAAGATACTGTTGGAAGGTCGAAAGCATAA
TTAAAAGAAAAAAGGATAAAAATTAATCTAAAATCAAATATAAAAAACAAAGACATAAGT
AAAGAAATGAGCCAATAAAAGCCTCAATTAGTCCAAACTTTCGGCAGAAAGAAAAACGCC
GTCGCTGTTGCCTCCGTCAGACCTGGTAAGGGTCTCCTCAAGGTCAACGGTTCCCCCATT
GATATGATCAACCCCTAGATCCTCCAAGCTAAGATCTACGAACCCATCCTCTTACTCGGT
CAATAGAAGTTCGCTAACCTCGACATTAGAATCAGAGTTAGAGGTTCTGGTTACACCTCT
TAAGTCTATGCCATCAGACAAGCTCTCTCCAAGGGTATCGTTGCTTACCACGCTAAATAC
GTCGATGAAAACTCCAAGAGAGAAATCAAGGAATAATTGATGCAATACGACAGATCCCTC
TTGGTTGCCGATCCCAGAAGAATGGAACCCAAGAAGTGTGGTGGTAGAGGTGCCAGATCT
AAAATGCAAAAGGCTTACAGATGA

>TTHERM_00706300(protein)
MKYNNSQQNRMKKDERTTKFNKDQINQGELIFRQEGKDNKKQKGKIKDQFKDTVGRSKAQ
LKEKRIKINLKSNIKNKDISKEMSQQKPQLVQTFGRKKNAVAVASVRPGKGLLKVNGSPI
DMINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAIRQALSKGIVAYHAKY
VDENSKREIKEQLMQYDRSLLVADPRRMEPKKCGGRGARSKMQKAYR

>TTHERM_00706300(gene)
ATGAAATATAATAATTCTTAGCAAAATAGAATGAAAAAAGATGAGAGAACTACTAAGTTT
AATAAAGACTAAATTAATTAAGGCGAATTAATTTTTAGATAGGAAGGAAAGGATAATAAA
AAGTAAAAGGGAAAAATAAAGGACTAATTCAAAGATACTGTTGGAAGGTCGAAAGCATAA
TTAAAAGAAAAAAGGATAAAAATTAATCTAAAATCAAATATAAAAAACAAAGACATAAGT
AAAGAAATGAGCCAATAAAAGCCTCAATTAGTCCAAACTTTCGGCAGAAAGAAAAACGCC
GTCGCTGTTGCCTCCGTCAGACCTGGTAAGGGTCTCCTCAAGGTCAACGGTTCCCCCATT
GATATGATCAACCCCTAGATCCTCCAAGCTAAGATCTACGAACCCATCCTCTTACTCGGT
CAATAGAAGTTCGCTAACCTCGACATTAGAATCAGAGTTAGAGGTTCTGGTTACACCTCT
TAAGTCTATGCCATCAGACAAGCTCTCTCCAAGGGTATCGTTGCTTACCACGCTAAGTAA
TTAAACAATATCATTTATTTAGAAATGTTTTGAAATGCAAACGAGATTGATTGATTGATT
AATTGACTGATCATTTACCATTCAATAAAAAATCAATACAATTTTGCTCCTTTTAGCATT
CTTATTAAATCCAGATTAAAATAAAAAAGATAAAAGTCATTTTTATTACCATCAATCATA
ATTTTATTATTTAACTCAATATTTTTACGGGAATGCGCATGTAGTTTGCTACAAATTACT
CAAAAAGGAAAATAATAACTAACTATTAGCTTGAATTTAGATTAGTAGATATCTATAAAT
ATAAAGCAAATCTAGCAGTTTAGTTGAATTTAATCAGCTAATAAGTTAACAAATCTAGGC
AAAGAACTTTCAAATATTAATATACTAATATAGAGGTTCTAAAAATAAAGGAATTACAAA
TGTATTTCTTAGATACTCTTGCAAAATCTAATAGCAAGGTTAGGAAACGAAGAATAACAA
AAAATAAAGCATAGTAAACTCCTAAAATAATTGATATTCTGGATAAGATTCATAAATATT
TATCAATAGCGATAAAAGAGCAAATGATAGAGCAATTATTCAGAAATTTATAAAAAAACA
AAAGGAAAATTAAAATTATTAAACTAATAAGGAGTTAGTATGATGTAAATAAGTCTAAAA
AGGATAGCTTGAGTAATTTAAAAAGCTGCTACTTAAAATTTTTTAGGATCCAAAGAAAAG
TTTATGTTTGAGTTAAATAAATAAATAGCTAATTACAAGGCAAATTACTCAATAAATGTA
TCATAAATCTTAAATAAGATTATTGTTCAAAGCAAATAACGAGTATTTTAAAATTATGAA
AGATTGATTGGTTTTAAATCTGCAATAAAAGCTAAGGAGAAGTTTAGCAAATTTTATAAA
AAAAAAACATATTTTAAATTTTCAAAACTCATTATTTATTTTTTGATTTACTAACTAACT
TACTAATTAAAAAATTTAGATACGTCGATGAAAACTCCAAGAGAGAAATCAAGGAATAAT
TGATGCAATACGACAGATCCCTCTTGGTTGCCGATCCCAGAAGAATGGAACCCAAGAAGT
GTGGTGGTAGAGGTGCCAGATCTAAAATGCAAAAGGCTTACAGATGA