Identifiers and Description

Gene Model Identifier

TTHERM_00773330

Standard Name

RPS13 (Ribosomal Protein of the Small Subunit 13)

Aliases

PreTt04424 | 128.m00102 | 3676.m00027

Description

RPS13 40S ribosomal protein S13; Homolog of yeast RPS13- human RPS13- bacterial RPS15;

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840
• intracellular (IEA) | GO:0005622

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00312 ) ribosomal protein S15
• ( PF08069 ) Ribosomal S13/S15 N-terminal domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.8%

TetraMine Data

TTHERM_00773330

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_17649.1	4.001242549923285e-107	ribosomal protein S15 containi ng protein (200 aa)
SGD	YDR064W	2.0007889996237956e-71	RPS13 Protein component of the small (40S) ribosomal subunit ; has similarity to E. coli S1 5 and rat S13 ribosomal protei ns
WormBase	WBGene00004482	6.997942222381785e-66	locus:rps-13 40S ribosomal p rotein S13 status:Confirmed UniProt:P51404 protein_id: CCD63229.1
Oxytricha	Contig5219.0.1.g44	6.001629673589058e-65	Ribosomal S13/S15 N-terminal d omain
DictyBase	DDB_G0284533	7.997908857293895e-55	rps13 on chromosome: 4 positio n 2127182 to 2127908
Stentor Coeruleus	SteCoe_23264	1.462486227251231e-31

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_00773330(coding)
ATGGGTCGTATGCAAATGAAAGGTAAAGGTAAGGGTATCTCCGGAAGTGCCCTCCCCTTC
AAGAGAAGATCTCCTAAGTGGCTCCACATGACTCCTTCTACTGTCGTTGACCTCTCCGTC
AAGTTAGCCAAGAAGGGTCTTACCCCCTCTCAAATTGGTGTTATCCTCAGAGATCAACAC
GGTATTCCCCAAGTTAGATTCTTGACTGGTTAAAAGATCCTCAGAATCCTCAAGAAGAAC
GGTTGTGCTCCTCAACTCCCCGAAGATCTTTACTTCTTGATCAAGAAGGCTCTCTCCATC
AGAAAGCACTTGGAAAAGAACAGAAAGGACAAGGACTCTAAGTACAGACTTATTCTTGTT
GAATCTAGAATCCACAGACTCTCTAGATACTACAAGCTCAACCAAAAGCTCCCCCCTAAA
TGGAAATACAACGCTCAAACTGCTTCTGCTTTAGTTCAATGA

>TTHERM_00773330(protein)
MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQH
GIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILV
ESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ

>TTHERM_00773330(gene)
ATGGGTCGTATGCAAATGAAAGGTAAAGGTAAGGGTATCTCCGGAAGTGCCCTCCCCTTC
AAGAGAAGATCTCCTAAGTGGCTCCACATGACTCCTTCTACTGTCGTTGACCTCTCCGTC
AAGTTAGCCAAGAAGGGTACACATTTTTTCAAATATTTTTATTATAAATCATCAATCAAT
CAATATTAACATAAATTCGCTCATTTTATATTTCGAAAGCTATTCAAACATCAAAACTAA
ACGACTGCTACGTTAATAAATTACATTAAAGTTAAAAGTATAAAAATTATTAACTAAAAT
CTATTTTAAGAAAAGAATAAACACTATAGTAATTATAAACATAAAATGCTTTAAATATTA
AATAAAAAATTAACACCTTCAAAAATAGATTGAGCCTTTACATTAGCTCAAAATGGTATT
TAATCAAAATGTGAATAATGAGGTAAATAATCTAAACAATTTTTGAATAAATTCAAAAAA
AGTATTTTCGCTAAAGGTCGTATCATCAGCGATCACGAGCGTTTCATTTACCTTATCTAC
TTCTTCCAGGTTCTTCAAATACCTCCAAGAATTAATCAAATAAATAATTAGCATTCTCTC
TCTCTAATTTTAGATAGGATTAGACGTTAACCTGATGATAATAGTTGCACTAAAAATTAA
ATTTAGGAATTGCAAGCAATTAAAATTTATTAAAGCTGGTTTCCTTTAGCGATTAGAGAA
TAAGTTGAAATAAGGAAGATCATAGCTATCCATCTGAATACATTTACTATTTATATCTTA
AGAAATAGTATTTGAAGTATAAATTTAGTTCCAAAAGCTAAATAATAACTAAATAAATAA
ATAAACAACCAAACAAAATACAGATTTAGCGAAAGATATGTTTTAAATAAATATTAAATT
CACTAAATATTTTAAATGCCGTTAAATGGTAGGCAAGATATAATTAACTAAATAAATCGC
CAATAGTATATGAATTGCGAATTAAAGATTTATAATACTAAATTTGTGCAATACTTCCAA
AAGATTTATGAATTCTTATTGAAATTTTTATTGGATTTGAATGTTAAAGAGCATAAAGCT
ATATATAATCCATCCTTAACAGTTAAGAATAGCTTATCAACAAATTTTGAAATAAAAATG
AATAAATGAATGAAAAATAGTTGAGAATATTTTTTGATAAATTTGATAAATAGTTAGTTG
TAAAATAATAAGAAAGCAGATCATGTTATTTATTGTTTGATAGCTTGCTACCCAAACAAA
ATGAGCTGATTGATTAGAATGATTTAATAAATAAATAAAATATTTATCTTCTCTTAATAT
CAAATAGGTCTTACCCCCTCTCAAATTGGTGTTATCCTCAGAGATCAACACGGTATTCCC
CAAGTTAGATTCTTGACTGGTTAAAAGATCCTCAGAATCCTCAAGAAGAACGGTTGTGCT
CCTCAACTCCCCGAAGATCTTTACTTCTTGATCAAGAAGGCTCTCTCCATCAGAAAGCAC
TTGGAAAAGAACAGAAAGGACAAGGACTCTAAGTACAGACTTATTCTTGTTGAATCTAGA
ATCCACAGACTCTCTAGATACTACAAGCTCAACCAAAAGCTCCCCCCTAAATGGAAATAG
TAAAAATTTAATTTAATTAATTAATTCTACTTTAACTTAATTCATAAAAAATTAAATATT
AACAACAACTTTTATAAAAAATAGCAACGCTCAAACTGCTTCTGCTTTAGTTCAATGA