Identifiers and Description

Gene Model Identifier

TTHERM_01109770

Standard Name

RPS11 (Ribosomal Protein of the Small subunit 11)

Aliases

239.m00049 | PreTt17947 | 3802.m00167

Description

RPS11 40S ribosomal protein S11 putative; Homolog of yeast RPS11- human RPS- bacterial RPS17;

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622
• ribosome (IEA) | GO:0005840

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.9%

TetraMine Data

TTHERM_01109770

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_20537.1	2.0005752503420762e-105	ribosomal protein S17 containi ng protein (158 aa)
Oxytricha	Contig22520.0.g95	6.997568408582301e-83	Ribosomal protein S17
DictyBase	DDB_G0282601	3.998648822114894e-70	rps11 on chromosome: 3 positio n 5991308 to 5992503
SGD	YDR025W	8.001396889359552e-66	RPS11A Protein component of th e small (40S) ribosomal subuni t; identical to Rps11Bp and ha s similarity to E. coli S17 an d rat S11 ribosomal proteins
WormBase	WBGene00004480	7.997908857293895e-55	locus:rps-11 status:Confirme d UniProt:Q20206 protein_i d:CAA97792.1
Stentor Coeruleus	SteCoe_5449	1.8048513878454153e-35

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_01109770(coding)
ATGGATACTCAAATTCAAAGAGCTTACTAAAAACAAGACGGTGTTTTCTTAAACTCTAAG
AAGCTTTTGGCTAAGAAGACTTCTGCTGGTGTTAGATACTACAAGAACATCGGTTTGGGC
TTCAAGACTCCTAAGGAAGCTATTGAAGGTACCTACGTCGATAAGAAGTGCCCCTTCACC
TCCAACCTTTCTATTAGAGGAAAGATCATTAAGGGTTTAGTCATTTCCACCAAGATGAAC
AGAACCGTTATCATCAGAAGAGATTACCTCCACTATGTCAGAAAATACAACAGATATGAA
AAGAGACACAGAAACATCCCCGTCCACATCTCCCCCTGTTTCTCCGTCAAGGAAGGTGAT
ATCCTCGTTGCTGGTCAATGCAGACCCATCTCCAAAACCGTCAGATTCAACGCCCTCTAA
GTTGTTCCTAACGAAATTATTGGTTCTGTCAGAAAATAATTCCTCCTTTTCTGA

>TTHERM_01109770(protein)
MDTQIQRAYQKQDGVFLNSKKLLAKKTSAGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFT
SNLSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGD
ILVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF

>TTHERM_01109770(gene)
ATGGATACTCAAGTGAGATATTTTTCTTTTTTAATTTTAAATTAGAATTTCTTTTTATAA
ATATCTCGCTGACTAACTCTATAACTTCAAAAGAGTAAATATAAAATGAAAATGAAAAAA
ATAAATCGCTTCAAATAGGTTAAATTGCAAATTCAGCAAGCAGCTATATTAATTTTACGC
TCAATTTTAGATTAAGCCATTTATTTATTTTACTCTATTGAATAATGATTAGTCGCGAGA
AAAATGAAATTTTCCAAATTAAAACCGAAAATGGAAAAATTACCAATTTAATGCTCAATT
TCGCTAAAACAATAAATTAATATCATTTTAATAATTCTACAGATTCAAAGAGCTTACTAA
AAACAAGACGGTGTTTTCTTAAACTCTAAGAAGCTTTTGGCTAAGAAGACTTCTGCTGGT
GTTAGATACTACAAGAACATCGGTTTGGGCTTCAAGACTCCTAAGGAAGCTATTGAAGGT
ACCTACGTCGATAAGAAGTGCCCCTTCACCTCCAACCTTTCTATTAGAGGAAAGATCATT
AAGTATGATACAGTTTATATAAAATTAAAAAACCCTAAAACAAAATTATCTATATTAACA
ATAATTATGCTTCTAAATATATTTTCTGCTCATTAACGCTCAGCTTTTGTAGCACATATG
TTTGATAATAAGCGATCTTCTAAAGCATTTATTATAGAAGGAGTCAAATATGAAATAAAT
AAAAATAGGATTGAAAAATTTAAGGGATTGAATAGTTTTATTAACATTTAATAGAATACA
GTATATCTATCCAATAACAAGTATTTAGCCTAGTATATAGCTCAAAAAAATTAAAGCATA
GATATAAAAAATAATATAATGAATACAGATTGATTTTTAGGCTTTTGAAATTCACTTAAG
TATTTTAAAAATGACTTAATAAAAGCATCCGATCAATCGATGGATGATGATACCTAACAG
AAAAAATGATTAGCACAAAAAAAAAATATTTTTTTGCTTTAAACATAAAAGGAAATCATA
GGAAAAAGCAAATATATGAATAAAGAAAGAATGCCAATTATAACTTAAAATTCTGATCGC
ATATTTTTATCAATAAAAATATAAATATATTAAATACTCGTAGAAATTAATAAATGAATG
AATAAATCAAAGAATAAGCAGAAGGATATCTTTTATTGTTACATATAGATAATATTTAAA
ATTAATTAATTAGTTAGTTAATTCCTTAAAATTTGTAATTAAAAAATTTATTTTTAACTA
TAGGGGTTTAGTCATTTCCACCAAGATGAACAGAACCGTTATCATCAGAAGAGATTACCT
CCACTATGTCAGAAAATACAACAGATATGAAAAGAGACACAGAAACATCCCCGTCCACAT
CTCCCCCTGTTTCTCCGTCAAGGAAGGTGATATCCTCGTTGCTGGTCAATGCAGGTAACT
AATCAATTATTTATATTCTAAATAATTAAAATAATTAAAAAATATATAATTCTAAAATTT
CTGTTTATTATAATAGACCCATCTCCAAAACCGTCAGATTCAACGCCCTCTAAGTTGTTC
CTAACGAAATTATTGGTTCTGTCAGAAAATAATTCCTCCTTTTCTGA