Identifiers and Description

Gene Model Identifier

TTHERM_00047480

Standard Name

RPS1 (Ribosomal Protein of the Small subunit 1)

Aliases

PreTt11227 | 3.m01917 | 3824.m02985

Description

Homolog of yeast RPS1, human RPS3A

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840
• intracellular (IEA) | GO:0005622

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10%

TetraMine Data

TTHERM_00047480

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_01703.1	2.9990501533945683e-168	ribosomal S3Ae family protein (266 aa)
SGD	YLR441C	3.9997119520108244e-79	RPS1A Ribosomal protein 10 (rp 10) of the small (40S) subunit ; nearly identical to Rps1Bp a nd has similarity to rat S3a r ibosomal protein
Oxytricha	Contig850.1.g11	7.000846320060671e-65	Ribosomal S3Ae family
WormBase	WBGene00004470	3.0014802379878627e-60	locus:rps-1 40S ribosomal pr otein S3a status:Confirmed UniProt:P48154 protein_id:C AA83605.1
DictyBase	DDB_G0277345	2.9997246065828143e-59	rps3a on chromosome: 2 positio n 7795600 to 7797187
Stentor Coeruleus	SteCoe_1787	1.8048513878454153e-35

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_00047480(coding)
ATGACTCAAGGTAAGAATCCTGGTTTGAAGGCTGGTGGTGGTAAGAAGGGCGCCAAGAAG
AGAACTATCGACCCCCTTTCTAGAAAGGAATGGTACGACTTCAGAGCCCCCATCCCCTTC
TCCTCCAAGTCCTTCGGTAAGACCCTCGTCACCAAGAGCTCCGGCAACAGAATTGCTTCT
GAAGAAATTAAGGGTAGAGTCGTTGAATCCACTCTCGCTGATCTCAAGGATAACTCTAAT
GACAAGGCCTGGAGAAAGGTTAAGTTGGTTATCGATGAAGTCGATGGTAGAAACGCTAAG
ACCTCTTTCTACGGTTTGGACATCACCAGAGACAGATTATGCTCCATGATCAGAAAGTGG
TAAACTCTCATCGAAGCTAGAGTTGACTGCAAGACCAACGACGGTTACATCATCAGAGTT
TTCACTCTTGCTTTCACCAAGAAGACCTCTGCTGGTAAGCAATCTTCCACCTCTACTTGT
TATGCTAAGTCTTCTCAAGTCAGAGCCATCAGAAGAAAGATCAACACCTTCATCACCAAT
GAAGCCGCTAAGTTGGGTATTGCTGAATTCTCCAAGAACCTCATCGGAGAAGACTACACC
AAGAAGATTGAAAAGGAAACCAAGAACATCTTCCCTCTCTAAAACATCACCATTAGAAAG
GTTAAGGTTCTCAAGAGACCCAAATTAGATGCTACTAAGATCGCTGAATTATACTCCCAC
GAAAAGAAGGGTGAAAAGGCTACTGGTAGAGATGGTGCCCCCGAAGAATAAGCTGCCTAA
AACTTGCTCGCCTAGTGA

>TTHERM_00047480(protein)
MTQGKNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIAS
EEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKW
QTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITN
EAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSH
EKKGEKATGRDGAPEEQAAQNLLAQ

>TTHERM_00047480(gene)
TATCAAAGCTAAAAAAGCAATACAAGGGTAATTTTTTAAGAAATAATTAAAGATAATAAA
ACACAAAACAAAAAAGGAACAAAAGTAAAAATGACTCAAGGTAAGAATCCTGGTTTGAAG
GCTGGTGGTGGTAAGAAGGGCGCCAAGAAGAGAACTATCGACCCCCTTTCTAGAAAGGAA
TGGTACGACTTCAGAGCCCCCATCCCCTTCTCCTCCAAGTCCTTCGGTAAGACCCTCGTC
ACCAAGAGCTCCGGCAACAGTAAGAATTTTTCCATCATGATTACTATTTCTCTCCTCTAT
TTTCCTTATTTTCAAAACGAATTGCATTTTTTGAATATCGCCATTTTTTCGAATATCTGA
CAACTTTAAATCTCCTTTAAATGATAAACGATTATATAACATTCACCGAGTCGCACATAT
TAGTAAACTATTTCACCACTAACTTCAAGCTTACTCATTTAGATCGTACAAGTTCAAATT
GTGAATAGGACAATTAATTAATAAATTAATCAAATCTGTTAAATATGTAGAAAAAAAAAT
AATAGTTAATGTAAAAAAAGAGATTAGCGAATAGCATTTAAAGTTAGCAAAAGACAAATT
GAAATTGGTATATACTAAATAAATTGAATTGAATGCGATTAAGGAGAAAAGGAATTAAAA
AATTAGCTACTTTCGATATCCGTATCCAAATGCTCTCTAAAATATAAAGGAATTAATTGT
AGATATCTTTTAATTTGTTAGCATATGGGTTGATTGACACTTTATCTAATTACTTATTTT
CTCCTCACTTAATTAATCCAAATAAAGAGATACCACATTAATGTTAATTGTACTATCTAA
AATGAAATATCTAGAAACCCTTACTCATTTGATACATAAAATATTTTAAAATTAAAATTT
TTTTTCGGATTAACTGAGGCTAAAGATTTTTAAATAACATAATCAATTAAATGAGTCGAA
AATCAACAAACAGCAATTCACGTTTTGAAAATCCAACATTCTCAATAAACTATATCAATC
CAAATAATTAACTTAATATTTTATTTTATTAGGAATTGCTTCTGAAGAAATTAAGGGTAG
AGTCGTTGAATCCACTCTCGCTGATCTCAAGGATAACTCTAATGACAAGGCCTGGTATGA
TTTTTAATTACAAAATATATAAAGCAACCTTATCTACTTATCAAACTTTGCTTTGAGTAA
ATAATGACTTCAGGCATGTTGATAATGCATGCAAACCAACTTACTTGCTAATAAATTATA
AATGAAGAATAAAAAATATTTAAATCAATTTAGTTTAGCTATTAATAAATAAATAAAAAA
ATAACCATCGCTGATTTTCTATACACAATAACTAAATCAATTTGTTTATTGAATTAGCTA
TAAAAGAAACAATAGATAAAGATACATACATGCATGCATACTCCCATAAAAACAAATGAT
ATATTTTAAAGTTAATAAACTTTCTATTAAAAATAAATTAAAAAAAGCAATCCATAACTA
AAAATTGATCTTTTGAAAAGAAAATAGCAGTTATTTTTTAATATCTTTTATCGATTAATT
AGAAAAAGGATTGATTCCATACTTTTAAAAAGGGAGCCAAAATCAACAAAAAAATTTAAA
TAAATTTTAGGATATTTATTTTTGAATTAATTCAAAATTTTATTTCTCAAAGCAAAATTA
ATTCTTAGAATTTTAGCTAAAACGATTTAATATCTTTTGGCTTGATCCTGTGATAAATAA
GTAGATGATAAGGATATAAATAAAAAATATATTAGAAAATTCTGTTACTAATCATGTTTT
GAATATAATAGGAGAAAGGTTAAGTTGGTTATCGATGAAGTCGATGGTAGAAACGCTAAG
ACCTCTTTCTACGGTTTGGACATCACCAGAGACAGATTATGCTCCATGATCAGAAAGTGG
TAAACTCTCATCGAAGCTAGAGTTGACTGCAAGACCAACGACGGTTACATCATCAGAGTT
TTCACTCTTGCTTTCACCAAGAAGACCTCTGCTGGTAAGCAATCTTCCACCTCTACTTGT
TATGCTAAGTCTTCTCAAGTCAGAGCCATCAGAAGAAAGATCAACACCTTCATCACCAAT
GAAGCCGCTAAGTTGGGTATTGCTGAATTCTCCAAGAACCTCATCGGAGAAGACTACACC
AAGAAGATTGAAAAGGAAACCAAGAACATCTTCCCTCTCTAAAACATCACCATTAGAAAG
GTTAAGGTTCTCAAGAGACCCAAATTAGATGGTAATTATTTTTCTTAACAAAATTTAAAT
TTATTTATTTTTCTCATTCTTAATTTCATATTTTTAATCTTTACTTTTTCATAAAATAGC
TACTAAGATCGCTGAATTATACTCCCACGAAAAGAAGGGTGAAAAGGCTACTGGTAGAGA
TGGTGCCCCCGAAGAATAAGCTGCCTAAAACTTGCTCGCCTAGTGA