Identifiers and Description

Gene Model Identifier

TTHERM_00522630

Standard Name

RPS0 (Ribosomal Protein of the Small subunit #0)

Aliases

PreTt12378 | 65.m00196 | 3717.m00075

Description

Homolog of yeast RPS0, human RPSA, bacteria RPS2

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840
• intracellular (IEA) | GO:0005622

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00318 ) ribosomal protein S2
• ( TIGR01011 ) ribosomal protein S2
• ( TIGR01012 ) ribosomal protein S2

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.1%

TetraMine Data

TTHERM_00522630

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_12843.1	9.996894623038854e-156	ribosomal protein S2 containin g protein (242 aa)
SGD	YGR214W	9.997863464222902e-69	RPS0A Protein component of the small (40S) ribosomal subunit , nearly identical to Rps0Bp; required for maturation of 18S rRNA along with Rps0Bp; delet ion of either RPS0 gene reduce s growth rate, deletion of bot h genes is lethal
Oxytricha	Contig845.1.g5	2.000597631390999e-64	Ribosomal protein S2
DictyBase	DDB_G0270316	2.998990600740728e-62	rpsA on chromosome: 1 position 4628419 to 4629156
WormBase	WBGene00004469	9.999353957415832e-59	locus:rps-0 40S ribosomal pr otein SA status:Confirmed UniProt:P46769 protein_id:CA A86061.1
Stentor Coeruleus	SteCoe_28184	2.4426007377405277e-36

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_00522630(coding)
ATGGCCACTCAAAGAAAACAAGACGATATCAAGAGACTTTTGGCTTCCAACTGCCACTAA
GCTACCATTAACCTCAACAACCAAATGAAGAGATACATCTCTCACAAGGGCGTCAACGGT
ATTCATTACATCAATATTGAAGAAACCTGGTAAAAGATCAAGCTCGCTGCTAGAGTTATT
GCCGCCGTTCAACACCCCGAAGATGTTATGGTTGTTTGCTCTAGAATTTACGGTCAAAGA
GCTGCCATCAAGTTCGCTGGTTACACTCACTGCAAGTCTACCTCTTCTTCCAGATGGACT
CCTGGTACCTTGACCAATTACTAGACCTTAAAATACGAAGAACCCAGAGTTCTCATCGTC
ACTGATCCCAGATCTGACTTCTAAGCCATTAAGGAAGCTTCTTATGTCAACATTCCCGTT
ATTGCTTTGTGCGACTCTGACTCTCCTCTCGCCTACGTCGATGTTGTCATTCCTTGCAAC
AACAGATCCACCGAATCTATCTCCATGATCTACTGGATGATCGCCAGAGAAGTTAAAATC
CTCAGAGGTGAACTCTCTAAGGACGAAGAATGGGAAGTTATGGTTGATCTCTTCTACCAC
AAGACCCTCCCCACTGCTGAACAAAAGGAAGCTGAAGAAGAAGAAGGTGCTGAAGGTGCT
GAAGAAAAGGTCGCTGAAGTTAAGGAAGGTGAAGCTGAACAAAATACTGATAACAAAAAC
TGGTGA

>TTHERM_00522630(protein)
MATQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVI
AAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIV
TDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMIYWMIAREVKI
LRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN
W

>TTHERM_00522630(gene)
ATGGCCACTCAAAGAAAACAAGACGATATCAAGAGACTTTTGGCTTCCAACGTATTAAAG
CATTAAAATAATTGAAATTCTATTACAAAAAATAGACTAATTTTTTGGGAAACCTCCTCA
TTAGCATCCATTTTTGCATGCGAGGACAGATCTTTCTTCCCAATAACTAATTATTTGCAG
AGTTAAATTTAATATATTCATTTTCATAATGTGTTGTTAATGATATAAAATATAGTGCCA
CTAAGCTACCATTAACCTCAACAACCAAATGAAGAGATACATCTCTCACAAGGGCGTCAA
CGGTATTCATTACATCAATATTGAAGAAACCTGGTAAAAGATCAAGCTCGCTGCTAGAGT
TATTGCCGCCGTTCAACACCCCGAAGATGTTATGGTAAGAATATTTAATCTTTTGAATGT
TTATTTTCTTATGCAAGCAAGAATCACAGTTATTGTAAGTAATGCTCTCACCATATAACA
TTTACAAAAGCAAAATGAATGCAATAGTGAGTTTACTCAAAAATCAGAACTGTAAGTTCA
CATTTATGCATGGATAAGCTGAAGACTAAAAATATACAGATTATATTTTCTGCATAAAAA
ATTAATGCTAAAAATTATAAGGATAGAATCTTAAAACCAAATATGAGCAAACTCTCGAAG
CACAAGATAGTATTGAATAATAAAATTAAGGATAAAAAAAGTAAAAAATAAGCAGCGATA
TAATACTTAAATTGAGTAGAATTATGTTCCTTCAACATTTAAATGCAACAACAAAAGCCT
CATATAATCTACTTAAATATTTGCTATGAGGATAATCTTATTAAAAAATAAAATAATTAT
TAGATATTTCGTAAGTATGTTAAGCTCTCAAAAAATTTAAAAAAAAAAAAATAATAATAA
TAATAAAATATAATAAAGCTATAAAGTTGTAAAATTAAAAGGAACTAACTCATTAAAAAA
ACTAAATAAATCAATGTAAGAGTGAAACATTTTACGTTTGTCTTTTGGTTCACTATTTCA
TTAATTTATTGACAAAATCATTTAAAACTTTGGCAAGCTGAGATAATTTTAAGGAAAGGA
AGGATGAGTGAAGTATTTGTTAAAAGCTGATTATTGCAAAAATATAATAATAAGAACTTC
ACTCAGGTGATTTATTTGTTGCATTGAAATAACAGGGGAAATCAATCAATTGTATAATTA
ATTAAGGAATAAATAAATAAATTAAATAAATAATTACTTAATAACCAACATGAATGTCCT
TTCAATTTCAAAACTAAAAAGTGGCTATTAGGGTTTAATTAAAAAAAAATGAAAATTTTC
TATCTATCTTGTCTGCGAGTAGTGAATAATTAATATGGAGAGAGCTAATTACTTAAATAA
AATAAGCTAAAATTAGAAATTCTAAAAATTAATTTCATAATTTAAATTAAACAATAGAGT
GTATTTTTAATGATTAAAATTTATTTTATTACTTTAGGTTGTTTGCTCTAGAATTTACGG
TCAAAGAGCTGCCATCAAGTTCGCTGGTTACACTCACTGCAAGTCTACCTCTTCTTCCAG
ATGGACTCCTGGTACCTTGACCAATTACTAGACCTTAAAATACGAAGAACCCAGAGTTCT
CATCGTCACTGATCCCAGATCTGACTTCTAAGCCATTAAGGAAGCTTCTTATGTCAACAT
TCCCGTTATTGCTTTGTGCGACTCTGACTCTCCTCTCGCCTACGTCGATGTTGTCATTCC
TTGCAACAACAGATCCACCGAATCTATCTCCATGATCTACTGGATGATCGCCAGAGAAGT
TAAAATCCTCAGAGGTGAACTCTCTAAGGACGAAGAATGGGAAGTTATGGTTGATCTCTT
CTACCACAAGACCCTCCCCACTGCTGAACAAAAGGAAGCTGAAGAAGAAGAAGGTGCTGA
AGGTGCTGAAGAAAAGGTCGCTGAAGTTAAGGAAGGTGAAGCTGAACAAAGTAATTTCTT
TATATTTAAATTAAAAATTTGAAAAATTAAATTGTCTTATTTAAAAATAGATACTGATAA
CAAAAACTGGTGA