Identifiers and Description

Gene Model Identifier

TTHERM_00578940

Standard Name

RPN5 (26S proteasome regulatory subunit N5)

Aliases

PreTt05787 | 78.m00159 | 3733.m00633

Description

RPN5 26S proteasome non-ATPase regulatory subunit; Fusion of uncharacterized protein and 26S proteasome subunit.

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• proteasome regulatory particle (ISS) | GO:0005838 | Ref:21637855

Domains

• ( PF01399 ) PCI domain
• ( PF08524 ) rRNA processing
• ( PF04702 ) Vicilin N terminal region
• ( PF05073 ) Baculovirus P24 capsid protein
• ( PF06102 ) Domain of unknown function (DUF947)

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.2%

TetraMine Data

TTHERM_00578940

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_16310.1	9.997093137033517e-262	hypothetical protein (432 aa)
Oxytricha	Contig21741.0.g7	1.0002223712504345e-79	PCI domain
DictyBase	DDB_G0281051	8.999119107228014e-72	psmD12 on chromosome: 3 positi on 3979792 to 3981586
WormBase	WBGene00004461	3.998862432046419e-53	locus:rpn-5 status:Confirmed UniProt:Q19324 protein_id :CCD69211.1
SGD	YDL147W	7.999866353200662e-52	RPN5 Subunit of the COP9 signa losome (CSN) and non-ATPase re gulatory subunit of the 26S pr oteasome lid, similar to mamma lian p55 subunit and to anothe r S. cerevisiae regulatory sub unit, Rpn7p; Rpn5p is an essen tial protein
Stentor Coeruleus	SteCoe_7042	4.780892883885469e-25

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21637855: Xiong J, Yuan D, Fillingham JS, Garg J, Lu X, Chang Y, Liu Y, Fu C, Pearlman RE, Miao W (2011) Gene network landscape of the ciliate Tetrahymena thermophila. PloS one 6(5):e20124

Sequences

>TTHERM_00578940(coding)
ATGGAAATTGAAGAAAGCTCCGAATTCGATAGATAGATTGCTTCCCTCCTCGAAAAGGAA
AGAGAAGCTCGTCTCAATAACAAGAGTGAAGAACTTGTCAACATCGTTAAACAAATCGTC
AAATTAGCTTGGGAAGTAAAAAATTATGACAAGCTCTTTGAACTCATGACTACACTTTCT
TAAAGAAGAGGTCAAAGCAAGAAAGCTTAAACTGATATGATCCAAATTGCTATGGGATAT
ATAGATTAGATTTAAGACATTCCCACTAGAATTAGATTAATCGAAACTATTAAAAACATT
TGTGATAAAAAAATTTACTTAGAAGTAGAATATGCTAGATGTTGTCTAAAGCTCGTTAAA
TACAAGGAAAGTGATAACGAAATTAATGAAGCTGCTAAGATTTTGCAAGAAGTTTAAGTT
GAAACTTATGGCTCTATGGATAAGAGAGAAAAGATTGAATTCATCTTATATCAAATGAAG
ATCATGCTTAAGAAGAAAGATTACATTCGTTTGATGATTATTTCAAAGAAGTTAACACCT
TAAGCCTTAAATGATAAAACAATAGTTGATTTGAAGATTTAATATTACGCTTATTTAGTT
GAATATTACTATCATGAAAGCATATATTTGCAAGTTTCTAACTGCTTCTAACAGATTTTT
GATGCAGTGAATGATAAAATAAACAAGGACATTGAATTGCCTACTGTTTTGGATTTTAAC
TTTGATGCTTCCTTCTAGACTACATTTGAAAATTTTGTTGCTTACCTTCTCATCAATAAG
CACTGCCATGAATAGGTTTAATTGTTACAGAAATTAGTAAGCAGCAAGTATAAACACATT
CTAGAAAGATATCCTGCTTTGAAGAATGCAGTTGAATCTTACTTATTAGATGAATTAATT
TCTACAGACCCTGCAAGTTACAATTTACAGAATATTTAATGTTTTTCTAGACCTGAAAAG
TCAGTTCAACACATAACTGATTTCAGAAAATAATTAATTCATCACAATATTCGTGTTATT
AATAAGTACTACTCTTAAATTTCTTTATCCCGTCTTGCTGCATTATTGAATATTTCTTAA
GAAGAAGCTGAAAATGAGCTTTGTGAAATGCAAAACGACTAGCTAGTAAATTGCAAGATT
GATCGTTTGGAAGGCGTAGTTAATTTCAAGCTTAGACGCTCTGAGAACGATATTCTCAAC
GAATGGGCTACCGATGTTAACTAAATCTTATCATTGATTGATCATACTTCTAACTTAATT
AAGAGAGAAGAAGAATAATACATCGAAGCTAAGTGA

>TTHERM_00578940(protein)
MEIEESSEFDRQIASLLEKEREARLNNKSEELVNIVKQIVKLAWEVKNYDKLFELMTTLS
QRRGQSKKAQTDMIQIAMGYIDQIQDIPTRIRLIETIKNICDKKIYLEVEYARCCLKLVK
YKESDNEINEAAKILQEVQVETYGSMDKREKIEFILYQMKIMLKKKDYIRLMIISKKLTP
QALNDKTIVDLKIQYYAYLVEYYYHESIYLQVSNCFQQIFDAVNDKINKDIELPTVLDFN
FDASFQTTFENFVAYLLINKHCHEQVQLLQKLVSSKYKHILERYPALKNAVESYLLDELI
STDPASYNLQNIQCFSRPEKSVQHITDFRKQLIHHNIRVINKYYSQISLSRLAALLNISQ
EEAENELCEMQNDQLVNCKIDRLEGVVNFKLRRSENDILNEWATDVNQILSLIDHTSNLI
KREEEQYIEAK

>TTHERM_00578940(gene)
ATGGAAATTGAAGAAAGCTCCGAATTCGATAGATAGATTGCTTCCCTCCTCGAAAAGGAA
AGAGAAGCTCGTCTCAATAACAAGAGTGAAGAACTTGTCAACATCGTTAAACAAATCGTA
ACTCATTCTTTTAGAAGTCATTATTGATTATTGTGTAATGAATGAGCTTTATTGCAGTGT
CTTTCTTTGCAATTAGGTGCCATTACATAAAAATTGAAGCTTATTTTTACTCGAGATTAA
TAATAGAATTATGTTTTCTTTCATATATTTCTATTAAAATTTTTTTATTGTAATAAATAG
GTCAAATTAGCTTGGGAAGTAAAAAATTATGACAAGCTCTTTGAACTCATGACTACACTT
TCTTAAAGAAGAGGTCAAAGCAAGAAAGCTTAAACTGATATGATCCAAATTGCTATGGGA
TATATAGATTAGATTTAAGACATTCCCACTAGAATTAGATTAATCGAAACTATTAAAAAC
ATTTGTGATAAAAAAATTTACTTAGAAGTAAAAATTAGATTTAAATAATAAATTTTTTAG
AGGAAGGAATTACTTTCTTAAAATAATTTAAAAATAATGCGAATTTGAAATAAAGTATTT
CTTGTTTTAATAAATAGGTAGAATATGCTAGATGTTGTCTAAAGCTCGTTAAATACAAGG
AAAGTGATAACGAAATTAATGAAGCTGCTAAGATTTTGCAAGAAGTTTAAGTAGACATTT
CCTTTTATTTTATTTAATAATAAATATACAAATAAAAAAGATACGCTAAAAACGATATTT
GAAATTTTTCAATAAAAATTTGAATACATTCAATTCACAAATTGACTATTAATAACTATG
AATCCTACTTAAATTAATTATTACTAAAAGCAAATCAAGATTTAAATCTTGAATTCCATT
TTACACATTACTACATAGTTTAAATTGAAGTATTTTAAATTTAAAGCTTGCAAAAAGAGT
TATCATTTTGAGAAATAGCAAATAAAAACTAATTTTAAACAGATAATATTCTTAAAATTA
AATATTTTTTATGAATAATCAATGTACTTTGAATAATAAAATAATTACTATTCAATCAGA
CAATTTTAGCATTGATTCTCTTTAATAAGCACAATAAGAATAATTAATAATTAAAATAAT
TATTATTTAGGTATTGAAATAATTTAATTAACAATTTTACTGAATTTAATTTTTTAAGAT
AAAGTTAAATGAATTTCCTCAACAATAAAAAAGACATAGTTTTTGTTTAAGAAATGATTA
ATAATTTTTTAGATCATCCATATAGAAAATAATTTTATTACAACACTCTTAATTTATAAA
ATGTGTTAATTAATTATAATTAAATATATAATATTCTTCAATAAATAAATAGCTTGATAT
CATATTTTTATATATTTAAAAATATTATTATTATTCACTCATAGTTTAGTTTGAATATGA
AATATGAAAATGAAATTATTTTAATAATGTGATTATTATAGAATGATTATTAACTTATCT
ATTTATTTAACGAATAGGTTGAAACTTATGGCTCTATGGATAAGAGAGAAAAGATTGAAT
TCATCTTATATCAAATGAAGATCATGCTTAAGAAGAAAGATTACATTCGTTTGATGATTA
TTTCAAAGAAGTTAACACCTTAAGCCTTAAATGATAAAACAATAGTTGATTTGAAGATTT
AATATTACGCTTATTTAGTTGAATATTACTATCATGAAAGCATATATTTGCAAGTTTCTA
ACTGCTTCTAACAGATTTTTGATGCAGTGAATGATAAAATAAACAAGGACATTGAATTGC
CTACTGTTTTGGATTTTAACTTTGATGCTTCCTTCTAGACTACATTTGAAAATTTTGTTG
CTTACCTTCTCATCAATAAGCACTGCCATGAATAGGTTTAATTGTTACAGAAATTAGTAA
GCAGCAAGTATAAACACATTCTAGAAAGATATCCTGCTTTGAAGAATGCAGTTGAATCTT
ACTTATTAGATGAATTAATTTCTACAGACCCTGCAAGTTACAATTTACAGAATATTTAAT
GTTTTTCTAGACCTGAAAAGTCAGTTCAACACATAACTGATTTCAGAAAATAATTAATTC
ATCACAATATTCGTGTTATTAATAAGTACTACTCTTAAATTTCTTTATCCCGTCTTGCTG
CATTATTGAATATTTCTTAAGAAGAAGCTGAAAATGAGCTTTGTGAAATGCAAAACGACT
AGCTAGTAAATTGCAAGATTGATCGTTTGGAAGGCGTAGTTAATTTCAAGCTTAGACGCT
CTGAGAACGATATTCTCAACGAATGGGCTACCGATGTTAACTAAATCTTATCATTGATTG
ATCATACTTCTAACTTAATTAAGAGAGAAGAAGAATAATACATCGAAGCTAAGTGA