Identifiers and Description

Gene Model Identifier

TTHERM_01142730

Standard Name

RPL9 (Ribosomal protein of the large subunit)

Aliases

PreTt04328 | 252.m00039 | 3824.m03216 | RPL6-E.coli

Description

Ribosomal protein L6 containing protein; Homolog of yeast RPL9(/RPL6) and E.coli RPL6

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840

Molecular Function

• rRNA binding (IEA) | GO:0019843
• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10%

TetraMine Data

TTHERM_01142730

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_01482.1	3.001062636953563e-123	ribosomal protein L6 containin g protein (189 aa)
DictyBase	DDB_G0278959	1.0002546821282671e-50	rpl9 on chromosome: 3 position 1387306 to 1388202
Oxytricha	Contig14534.0.g66	5.00115835552873e-49	Ribosomal protein L6
WormBase	WBGene00004420	1.000499495426459e-47	locus:rpl-9 60S ribosomal pr otein L9 status:Confirmed UniProt:Q95Y90 protein_id:CC D63603.1
SGD	YNL067W	1.0003292389192957e-45	RPL9B Protein component of the large (60S) ribosomal subunit , nearly identical to Rpl9Ap a nd has similarity to E. coli L 6 and rat L9 ribosomal protein s
Stentor Coeruleus	SteCoe_7487	9.602680054508676e-24

General Information

No Data fetched for General Information

Associated Literature

1. Ref:22052974: Klinge S, Voigts-Hoffmann F, Leibundgut M, Arpagaus S, Ban N (2011) Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Science (New York, N.Y.) 334(6058):941-8

Sequences

>TTHERM_01142730(protein)
MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQA
SRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKR
IRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQFLDGIYVS
DKRLAMNE

>TTHERM_01142730(coding)
ATGAGACACTTACTTACCGAAGTCAACGTACCCATCCCTGATAAGGTCACCATCACTGCT
AAATAAAGAGTAGTTGAAGTCAAGGGACCCTTAGGTACCATCAAGAGAGCTTTCAGATAC
GCCTCTGTTGATATTCAAAAGCCTACCGCCGACAACGTTAAGTTATAAATCTGGTAAGCT
TCCAGAAAGGAAAGAGCCGTCCTCCAATCTATTGCTTCTCAAATCAAGAATATGATTAGA
GGTGTTACTGAAGGTTACAAATTCAAGATGAAGCTTGCCTTCGCTCACTTCCCCATTTAA
GAAGCTGTTGCTAAGGATGGTTCCTCCATTGAAATTAAGCATTTCTTGGGTGAAAAGAGA
ATTAGAAGAATCCAAGCTCTTCCTGGTGTCAAGATCTCCAGAAAGGACGAAGAAAAGAAT
ACCCTCACCCTCTAAGGTATTGACTTGAACAACGTCTCCCAAACTTGCGCTCTCATCCAC
CAATCTTGTTTGGTCAAAGAAAAGGATATCAGACAATTCTTGGACGGTATTTACGTTTCT
GATAAGAGACTCGCCATGAACGAGTGA

>TTHERM_01142730(gene)
ATGAGACACTTACTTACCGAAGTCAACGTACCCATCCCTGATAAGGTCACCATCACTGCT
AAATAAAGAGTAGTTGAAGTCAAGGGACCCTTAGGTACCATCAAGAGAGCTTTCAGATAC
GCCTCTGTTGATATTCAAAAGCCTACCGCCGACAACGTTAAGTTATAAATCTGGTAAGCT
TCCAGAAAGGAAAGAGCCGTCCTCCAATCTATTGCTTCTCAAATCAAGAATATGATTAGA
GGTGTTACTGAAGGTTACAAATTCAAGATGAAGCTTGCCTTCGCTCACTTCCCCATTTAA
GAAGCTGTTGCTAAGGATGGTTCCTCCATTGAAATTAAGCATTTCTTGGGTGAAAAGAGA
ATTAGAAGAATCCAAGCTCTTCCTGGTGTCAAGATCTCCAGAAAGGACGAAGAAAAGAGT
AATTCATTTTTTTTTTTTTAATATTTTTTAATATAAATGTGCATGTATTCGATTAAAATA
CTAAGAGCTATTTCGCTGATAGCTTGCATTTTAAGATTAATTTGATTAGTCTATTTTACA
GTAATTAAATTTGCTTTTCTCCTTGGTTATGCAGATATTTGGAGTAATTAATAGTCGGTC
ATCAATCAATTAATCAATGTGTATAAATCAACATTAAATAAGAATTTAGAAATCAAAATC
AATTTAAGCACATTCTCCAGAAAAAAAGTTCCTTAATATGCTAATAATAGTATCCAAATT
ATAGTTTAAAACTCATACAACAGTTTAAAATAAGTGAAATTAACAAACCAAACAACTAAG
CTACCCTTTAATGAATATTAAGTGCTAATACCTATCAATCAATCAGGTGCTTGTCCTTGT
TCTATATTTAATGAACAAGTTAGTTCACGAAGTCATAATAGGTTGATAAAAAGAGAATGA
GTTAAAATGAAGAGTAGCGAAATATTTACTGAATAGCAATAATTAGCTTAATTTAATTAA
ATTAGTTAATATAGGCGGCAGCAACAGCATTATCATCATTTTTAATTATATTTTTCAGGG
AAATAAGCAATGAAAAGATTATATTTATATAAGCTGGCTGCAGCAAAAAACTCTTTCATT
TAAGGTGTGAGTAATAAATAAATCATCCTATAAAGTAGCTCAAAGTATAATAAAGGACTG
ATTCGTATGAGTTTAAATTAAATGGAATTATATTGTTGGATAGAAAATTAATTTTGAATA
ATAACCAGATATTTTGTGAATGAACAGCAAAAAACAAAAAGACAATCAAATTAATATTAA
AATAAATGAATTAATAAATAAATAAATATATTTTATTTGGTTTACTGCACAAATATTTAC
AATAAATAAATAAAATAATAATTCTTACAATCATTTCTAACAACATATCTTTATCAATTA
TTATAGATACCCTCACCCTCTAAGGTATTGACTTGAACAACGTCTCCCAAACTTGCGCTC
TCATCCACCAATCTTGTTTGGTCAAAGAAAAGGATATCAGACAATTCTTGGACGGTATTT
ACGTTTCTGATAAGAGACTCGCCATGAACGAGTGA