Identifiers and Description

Gene Model Identifier

TTHERM_00736480

Standard Name

RPL5 (Ribosomal protein of the large subunit)

Aliases

PreTt25473 | 120.m00131

Description

RPL5 60S ribosomal protein L5; Ribosomal L18p/L5e family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840
• intracellular (IEA) | GO:0005622

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF02755 ) RPEL repeat
• ( PF00861 ) ribosomal L18p/L5e family

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10%

TetraMine Data

TTHERM_00736480

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_10631.1	9.997093137033517e-262	hypothetical protein (302 aa)
Oxytricha	Contig22366.0.g46	1.0001900614163146e-108	Ribosomal L18p/L5e family
WormBase	WBGene00004416	6.001435805040647e-94	locus:rpl-5 60S ribosomal pr otein L5 status:Confirmed UniProt:P49405 protein_id:CA A90251.1
DictyBase	DDB_G0278539	2.0008312485874125e-83	rpl5 on chromosome: 3 position 1039561 to 1040650
SGD	YPL131W	2.0001503375893664e-79	RPL5 Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins ; binds 5S rRNA and is require d for 60S subunit assembly
Stentor Coeruleus	SteCoe_20741	1.2160992992528256e-37

General Information

No Data fetched for General Information

Associated Literature

1. Ref:22052974: Klinge S, Voigts-Hoffmann F, Leibundgut M, Arpagaus S, Ban N (2011) Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Science (New York, N.Y.) 334(6058):941-8

Sequences

>TTHERM_00736480(coding)
ATGGGTTTCGTTAAAGTTCTCAAGACTAAGGCTTACTTCAAGAGATTCTAAACCAAGTAC
AGAAGAAGAAGAGAGGGTCTCACTGATTACTACGCCAGAAAGAGATTGATCATCCAAGAT
AAGGATAAATACAACACCCCCAAGTACAGATTAGTTGCTAGAGCCACCAACACCAGAATC
ATCGCCTAGATCGTCTACGCTACCCTCAAGTGCGACAGAGTCCTCTGTGCTGCTGACTCC
TACGAACTCAAGAGATTCGGAGTCTCCACTGGTTTGGCTTCCTACGCTGCTGCCTACGCC
ACTGGTCTCTTATTAGCCAGAAGATTGCTCAAGCAAATCGGTTTAGACACCGTTTATGCT
GGTCAAACTAAGGTTGATGGTGCCTACTTCAATGTCGATGAAGACCAAAAGGAAAAGAAG
CCCTTCAAGGCTATTTTGGATGCTGGTTTGGTCAGAACCACCACCGGTAACAGAGTCTTC
GGTGTCTTAAAGGGTGCTTGCGATGGTGGTATTAACATCCCCCACTCTGAAAGCAGATTC
CCCGGTTACGTCAGAGCTTCTGATGAAGGTGAATCCTCCAAGTACAAGCCTGAAGACCAC
AAGGCTAGAATCTTCGGTAAACACATCGATGCTTACATGAAACACTTAAAGGGACAATCC
AACGAAGCTTTCTAAAAGCAATTCTCCAAGTGGAGCAAGACCCTCGAAGCTGCTAAGGTT
GACTCCGTTGAAAAGCTCTTCACCAAGGTCCACGCTGAAATCAGAAAGAACCCCGAAAGA
GTTAAATCTACCAAGAAGAACGATAAGCCCAAGAGAGACCACAAGAAGTTCTACCCTACC
AAGCTTACCGCTGCCCAAAGAAAAGACAGAGTTAAAACTAAGTTCCAACTTGCTCTCTCT
TAATGA

>TTHERM_00736480(protein)
MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRI
IAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYA
GQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGINIPHSESRF
PGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKV
DSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALS
Q

>TTHERM_00736480(gene)
ATGGTAACTCATTTTTTCTGAAATTTACTATTATATATTTAATCTAATTCCAAAATGAAT
ACTAATCATTTTATTTTATCACTCATCAACAGGGTTTCGTTAAAGTTCTCAAGACTAAGG
CTTACTTCAAGAGATTCTAAACCAAGTACAGAAGAAGAAGAGGTAAACAGCTATATTATT
TCTTTGTATCATCTCGTCTTTTCTATTCTCGCTATTTAATCGTCTCAAACAGCATCCTTC
ATCATACAATCACTCATATCTGGTGCAAATCTCCTCAATATTTAATAATGAGAGCATATC
CTACGAATAAATCGTTGATTCGTTCATAGCAAGCTTCATAAAACATGCAAATACATATTA
TTTATTGCGATTGGTTTGGCATTAACAAAAATAATTTAGCAAGATATTTATTTATTTTAG
GACTATAAGCATAATGTTATTTCAATGGTTTTTTGCTAACTACTCAGCTTGATGAATATA
ATTTGTATTCAAAAGTCAAACATTTGCAATATTTCCAGCATCTTAGCTTGCTATCAAAGC
TTTCAAACCTAAAATTAGCCTATAAACAAACAATCCAAAATATAAAGTTTTAGACATAAA
GCAAAATAGTATGAACAGAAAAAGTTAATTCAGCTTCGGTTTTGTAATAGCGTTCTCTTT
AGCATATTGTTAGCTGCTTCAAGCATACTAATTTAATAAAATTCAATTAGACGCTTTTCC
AATATCAGCAAGGCAACTTATATGAAAATAGATACCTTGATAAGGTTAAACATAATTGCA
ACTAGGTTTAGATAGGAACAAACAAACTCAAATGATTATCTTGCTTCTAAAACCAACAAA
ATAATCAACATGCATAGAAATAGGCAGAAGCAGTTCAAAGCTCCTAAATTTGCTTCATTA
TCAAGATAAATCCAAACAACAAAAGAGAGTTAGCTAATTGACAGATAGATAAATAAATAA
ACATCATAATATCCTTTATAGATATTTTTGCAAAGCATTCAAATAAAACAAAATTATTGT
ATAAAACTATTAAGCAATTGAGTGAGTGAGTGATTGATTGATTGATTGAGTGAGTGATTA
TAATATTGATGAAATATTTTCTTTGGTTGAAGAAAATGATATTGAATTAAATAAATGGGA
GAAGAAAAGACAAATAAATAGATGAAAGAATGAATAAATTTAAATATAAAAAAAAAAAAA
GATTTTAAATATTAAATATTTTAATTTAAATAGAGGGTCTCACTGATTACTACGCCAGAA
AGAGATTGATCATCCAAGATAAGGATAAATACAACACCCCCAAGTACAGATTAGTTGCTA
GAGCCACCAACACCAGAATCATCGCCTAGATCGTCTACGCTACCCTCAAGTGCGACAGAG
TCCTCTGTGCTGCTGACTCCTACGAACTCAAGAGATTCGGAGTCTCCACTGGTTTGGCTT
CCTACGCTGCTGCCTACGCCACTGGTCTCTTATTAGCCAGAAGATTGCTCAAGCAAATCG
GTTTAGACACCGTTTATGCTGGTCAAACTAAGGTTGATGGTGCCTACTTCAATGTCGATG
AAGACCAAAAGGAAAAGAAGCCCTTCAAGGCTATTTTGGATGCTGGTTTGGTCAGAACCA
CCACCGGTAACAGAGTCTTCGGTGTCTTAAAGGGTGCTTGCGATGGTGGTATTAACATCC
CCCACTCTGAAAGCAGATTCCCCGGTTACGTCAGAGCTTCTGATGAAGGTGAATCCTCCA
AGTACAAGCCTGAAGACCACAAGGCTAGAATCTTCGGTAAACACATCGATGCTTACATGA
AACACTTAAAGGGACAATCCAACGAAGCTTTCTAAAAGCAATTCTCCAAGTGGAGCAAGA
CCCTCGAAGCTGCTAAGGTTGACTCCGTTGAAAAGCTCTTCACCAAGGTCCACGCTGAAA
TCAGAAAGAACCCCGAAAGAGTTAAATCTACCAAGAAGAACGATAAGCCCAAGAGAGACC
ACAAGAAGTTCTACCCTACCAAGCTTACCGCTGCCCAAAGAAAAGACAGAGTTAAAACTA
AGTTCCAACTTGCTCTCTCTTAATGA