Identifiers and Description

Gene Model Identifier

TTHERM_00339620

Standard Name

RPL40 (Ribosomal Protein of the Large Subunit #40)

Aliases

PreTt06103 | 34.m00340 | 3689.m00134

Description

Homolog of Yeast RPL40; RPL40-Ubiquitin fusion protein; Ribosomal L40e family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622
• ribosome (IEA) | GO:0005840

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00240 ) Ubiquitin family
• ( PF01020 ) ribosomal L40e family

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.6%

TetraMine Data

TTHERM_00339620

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_15096.1	1.000211181581171e-120	ribosomal L40e family protein (174 aa)
SGD	YKR094C	9.996373193201036e-79	RPL40B Fusion protein, identic al to Rpl40Ap, that is cleaved to yield ubiquitin and a ribo somal protein of the large (60 S) ribosomal subunit with simi larity to rat L40; ubiquitin m ay facilitate assembly of the ribosomal protein into ribosom es
WormBase	WBGene00006728	3.000074895537278e-78	locus:ubq-2 Ubiquitin-60S ri bosomal protein L40 status:C onfirmed UniProt:P49632 pr otein_id:CAB04967.1
Oxytricha	Contig12690.0.g68	1.9998099689916736e-77	Ubiquitin family
DictyBase	DDB_G0280755	2.0007889996237956e-71	ubqB on chromosome: 3 position 3722395 to 3722781
Stentor Coeruleus	SteCoe_28302	3.6251409191435593e-34

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00339620(coding)
ATGAATGAAGTGAGAAATAAGAGAAGGTAAATATTGATTAGATATAAAAAAGATCTAAGG
ATAAAAAACCAAAATAAAGAAATCAAAAATTATTAAATCAAAAAAAAAGAAATTAAAAGA
AGAAAAAAGGAAATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGAC
GTTGAAGCCTCCGACACTATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATC
CCCCCTGATCAATAAAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACCCTT
TCTGACTACAACATCCAAAAGGAATCTACCCTCCACTTAGTTTTGAGATTAAGAGGTGGT
GGTATGGAACCCACTATTGCTGCTCTTGCTAAGAAGTACAACTGCGAAAAGAAGGTTTGC
AGAGACTGTTATGCTAGATTACCCCCCAAAGCTACCAACTGCAGAAAGAGAAAGTGCGGT
CACTCCAACTCCCTTAGATTGAAGAAGAAACCCAAAGAGTGA

>TTHERM_00339620(protein)
MNEVRNKRRQILIRYKKDLRIKNQNKEIKNYQIKKKEIKRRKKEMQIFVKTLTGKTITLD
VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
GMEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPKE

>TTHERM_00339620(gene)
ATGAATGAAGTGAGAAATAAGAGAAGGTAAATATTGATTAGATATAAAAAAGATCTAAGG
ATAAAAAACCAAAATAAAGAAATCAAAAATTATTAAATCAAAAAAAAAGAAATTAAAAGA
AGAAAAAAGGAAATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGAC
GTTGAAGCCTCCGACACTATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATC
CCCCCTGATCAATAAAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACCCTT
TCTGACTACAACATCCAAAAGGAATCTACCCTCCACTTAGTTTTGAGATTAAGAGGTGGT
GGTATGGAACCCACTATTGCTGCTCTTGCTAAGAAGTACAACTGCGAAAAGAAGGTTTGC
AGAGACTGTTATGCTAGATTACCCCCCAAAGCTACCAACTGCAGAAAGAGAAAGTGCGGT
CACTCCAACTCCCTTAGATTGAAGAAGAAACCCAAAGAGTGA