Identifiers and Description

Gene Model Identifier

TTHERM_00578640

Standard Name

RPL13 (Ribosomal protein of the large subunit)

Aliases

78.m00129 | PreTt05757 | 3733.m00024

Description

RPL13 60S ribosomal protein L13; Homolog of yeast RPL13/(RPL13e)

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622
• ribosome (IEA) | GO:0005840

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF01294 ) ribosomal protein L13e

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.5%

TetraMine Data

TTHERM_00578640

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_16289.1	1.9990002532767049e-131	ribosomal protein L13e contain ing protein (205 aa)
Oxytricha	Contig4065.0.1.g96	3.000458792073453e-56	Ribosomal protein L13e
DictyBase	DDB_G0291870	2.9993743585281133e-40	rpl13 on chromosome: 6 positio n 852689 to 853474
WormBase	WBGene00004425	7.003455847728069e-40	locus:rpl-13 60S ribosomal p rotein L13 status:Confirmed UniProt:P91128 protein_id: CCD66399.1
SGD	YDL082W	5.002276765025871e-34	RPL13A Protein component of th e large (60S) ribosomal subuni t, nearly identical to Rpl13Bp ; not essential for viability; has similarity to rat L13 rib osomal protein
Stentor Coeruleus	SteCoe_23192	2.1151310375910805e-19

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00578640(protein)
MKHNNQLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTEKLQPVVRKQT
QRYNKSTKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSK
LVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIAELRKKKVYRI
IRQEKTNQKWDGKRKAKAQAAAEPKA

>TTHERM_00578640(coding)
ATGAAGCACAACAATCAATTACCCGTTGCCTAATTAAGAAAGCATTAATAATTCAGAATT
AAAACTTTCTTCAACCAAGCTGCCTAAAAGAAGGCTAGATTACATGCCAGAAGAGCTTAA
GCCGCCGCTGTCTTCCCCAGACCTACTGAAAAGTTACAACCTGTTGTTAGAAAGCAAACC
CAAAGATACAACAAGTCCACCAAGCTCGGAAGAGGTTTCACCTTACAAGAATTGAAGGCT
GCCGGTATCTCTGCCGCTTTTGCCTAATCTATTGGTATCAAGGTTGACCACAGAAGAAAG
AACAGATGTCAAGAATCTCTTGAATTAAACAAGAAGAGACTTTTGGCTTACGTTAGCAAG
CTCGTTCTCTTCCCTAGACACTAAGGTAAGGCCAAGAAGGGTTTAGTTAATGACACCGCT
GACACCAGCAGTGCTGCTCAAAACGCCTTATAAACCTCTGTTCCTCTTCCCTCTGTCTCC
AAGAGAGAAAAGGCTGTTTCCAACATCGCTGAACTCAGAAAGAAGAAGGTTTACAGAATC
ATCAGACAAGAAAAGACCAACCAAAAGTGGGATGGAAAGAGAAAGGCTAAAGCTCAAGCT
GCCGCTGAACCCAAGGCATGA

>TTHERM_00578640(gene)
ATGAAGCACAACAATCAATTACCCGTTGCCTAATTAAGAAAGCATTAATAATTCAGAATT
AAAACTTTCTTCAACCAAGCTGCCTAAAAGAAGGCTAGATTACATGCCAGAAGAGCTTAA
GCCGCCGCTGTCTTCCCCAGACCTACTGAAAAGTTACAACCTGTTGTTAGAAAGCAAACC
CAAAGGTGAATATCTATCATTCAATCCAAATTAAATCACAAACCGATCACCATTTTTTTC
TTAAAAATTATTGATTCAAAATACAAATATGCATTTTACTTTTTCATTTTACAATTTCCA
TCGAACTCTAAAAGATGGGACAGCTTCCCATGCAATTGTATTTTTTTACAGTTCGTTTTA
ACCAAATAAATGCTGGTCAATCGCTCAGTCAATAAATCAATCAATTAAAGAGTCAATTAA
ATAAAAAAATCACTAGAATTAGGGTAACTTAATCGAATAGATATTTCATTCTTAAGTTAG
CAGATGAATTTAAAATTGTAATAGAAATATAATTAAATGCGGAATACTTTTTAACAAAAT
GGAATTCAATCATAACCTGTATTGCGGAAATCTAGTAAAGTAGATTTAGCTTCTGATTTA
TCTGATTGTTAGATTTGAAATATCATCAGCCTTTAATTAGGTTTTAACTAAATAAATGTA
AATAACACAATTTAGGTATTCTAAAACTTCTCAATAAAGAATATAATCAGTAGACATTAT
GCCAACATATTTAGCAAAGAATATAAAAGCAATTTATGTATACAGTAGATCGATTAATTG
ATTAGGTAGGGAGTCTTAGCGTCAATCAAAGATCAAGTAGATCATTTGGTTTCTAATAAA
TTTAAGCAAGCTAAATTATAAAATATCTAAATACAAATTTAAAAAGACGAAATTATCAAA
ACTCATAAATGAATGATGATGAAATAATTTAAATAGAGCAACTTGTAATATTTGTTCAAT
GAAAAAAAAATATGCAAAATAAAGCCGCCAAATATTTAAAAATTTAGGCATGTTAGGGTA
CATTAAATACTCATTTATCAAAACTCAAATAAACCTTATTGATTGAATGAAATAATTACT
TGCATAATAATTAAAATTGATTGATTCATGATAATGACTGTTTAATTGATTGATTGAAGC
TGAAATATTTAGGAATTGAATATAATTGTAAAAACAATTTAAATTCTACAAAAAAGTTTA
ATAAGGTTAAAACTAAAAGTAAATATAATCCATTCATTTAAAGTTTAATCTTTAAATTAA
GTGAAATCATGCATATTATTTTTGAATGCTTTACAAAATTAAATCGCAATAAAAATAAGA
ATAAAAATAAATACTGATTGGTTTAAACTTCAATTATTTATTAATAAATTTTACTCATCT
ATTTTCTATTAAATTTAGATACAACAAGTCCACCAAGCTCGGAAGAGGTTTCACCTTACA
AGAATTGAAGGCTGCCGGTATCTCTGCCGCTTTTGCCTAATCTATTGGTATCAAGGTTGA
CCACAGAAGAAAGAACAGATGTCAAGAATCTCTTGAATTAAACAAGAAGAGACTTTTGGC
TTACGTTAGCAAGCTCGTTCTCTTCCCTAGGTAAATAAAGAAACATTAATAAATTTTATT
AGCAAATATAAAGAAATAGGCATAGTATTTTTGTATATATCATTTAAATACCTTCAAATA
ATTTACAAGTTAAGCAATTAGATTATGAATTTTAATCTAAAAATTTTAACTTACTTACCA
TTTTATTTGATTTGTATTTTAACTGAGCAAAAATACTTACTGAATATATATATATATATT
TATATGCAAACTAGCCTAAAGATATTTGCAAGAAATTAATATCTGTAATATGGCAATTTC
TTATCTTTATTTTTAATAAAAATAGACACTAAGGTAAGGCCAAGAAGGGTTTAGTTAATG
ACACCGCTGACACCAGCAGTGCTGCTCAAAACGCCTTATAAACCTCTGTTCCTCTTCCCT
CTGTCTCCAAGAGAGAAAAGGCTGTTTCCAACATCGCTGAACTCAGAAAGAAGAAGGTTT
ACAGAATCATCAGACAAGAAAAGACCAACCAAAAGTGGGATGGAAAGAGAAAGGCTAAAG
CTCAAGCTGCCGCTGAACCCAAGGCATGA