Identifiers and Description

Gene Model Identifier

TTHERM_00028740

Standard Name

RPL12 (Ribosomal Protein of the Large subunit #12)

Aliases

PreTt14204 | 2.m02033 | 3825.m02597

Description

Homolog of Yeast RPL12, Human RPL12, Bacterial RPL11; Ribosomal protein L11; RNA binding domain containing protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• ribosome (IEA) | GO:0005840

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.8%

TetraMine Data

TTHERM_00028740

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_00774.1	7.998584418911683e-103	ribosomal protein L11, RNA bin ding domain-containing protein (165 aa)
SGD	YEL054C	1.0000099287337047e-53	RPL12A Protein component of th e large (60S) ribosomal subuni t, nearly identical to Rpl12Bp ; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribos omal proteins
WormBase	WBGene00004424	4.000521932330652e-52	locus:rpl-12 60S ribosomal p rotein L12 status:Confirmed UniProt:P61866 protein_id: CAB05226.1
DictyBase	DDB_G0288295	3.00039543526891e-44	rpl12 on chromosome: 5 positio n 1359447 to 1360234
Oxytricha	Contig10133.0.0.g101	7.00174216458014e-43	hypothetical protein
Stentor Coeruleus	SteCoe_13537	1.9287498479639178e-22

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00028740(coding)
ATGCCTCCTAAAGTCGACCCCAACGAAGTTAGATTCATTAACATTAAGGTTTTCGGTGGT
GAACCCGGTCCCGCTTCTACCTTGGCCCCCAAGCTCGGTCCTCTCGGTTTGAACGCTAAG
AAGGTCGGTGAAGATATCATTGCTGCTTGCAACCAACACAAGGGTATCAGAGTTATGATC
CAACTCAAGTGCCAAAACAGAGCTGCTCAAGTTACCGTCGTTAACACCTCTTCCGCTCTT
ATCATCAAGGAACTCGGTAAGCACGTCAGAGATAGAAAGAAAACTAAGGGTATCAAGCAC
TCTGGTGACCTCAGTTTGGAACAAATCAAGAAGATCGCCAAGATTATGTAAGACGAAAAC
AAGAGTTTCGCCAAGACCTTCGCTGGTACTGTTAAGTCCGTCCTCGGTACTGCCCAATCT
ATCGGTATCACCGTTAACAAGTTACACCCCAAGAAGGTCATTGAATAAATCAACAAGGAA
GAAATTAAGATTTGA

>TTHERM_00028740(protein)
MPPKVDPNEVRFINIKVFGGEPGPASTLAPKLGPLGLNAKKVGEDIIAACNQHKGIRVMI
QLKCQNRAAQVTVVNTSSALIIKELGKHVRDRKKTKGIKHSGDLSLEQIKKIAKIMQDEN
KSFAKTFAGTVKSVLGTAQSIGITVNKLHPKKVIEQINKEEIKI

>TTHERM_00028740(gene)
ATGCCTCCTAAAGTCGACCCCAACGAAGTTAGATTCAGTATGGCTTTTCTTCAATAATTT
TTTTTCTTAATGTTATTTATCAAAGCGCATCCTAATTTTTGTTAGTGATAGCAACTTCTA
AGCAAATGCCGCCATATACAGACAGAGATTGGTTGATTTATCAATCAATTATTAATGAAT
TTACTTCATAACATTATTTTTTCCCATCTCAAAAATAAACGATAATTTAGTTAATAATAT
TTCTAATCCATCGTTTTCATATAAAATGGTTCTGACAAATAAACTTCTTAACAACTATCA
AGATTAATTTAGATTCAAAGCTAATAAAGATGAACCCAAAATGATTAATTAACCTCTTAA
TTTTGCTCTTCCTTCTAAAATATCTAAATAATGATATAAACAAACAAAGGTACAAGCATA
ATGATGAAAAGCATTACTAACTAGCAAAAGAAATATTTAAATATAATTAAATTTAACTAA
ATTTTCATTAATAATAATCGCATACTCATAGATAGAATCAATATTAAAAAGCAAGTATAA
AAAATTAGCTAATAAGAAAACTCAGCATGATTCAAAATGAGATCTATTTATCATTCGATA
TACTTTGCCATTTAATACATAAACAACACTCTCTCAAATGATTGCAATTATTGAAAAAAA
GTTAATCAAGCATAGAAAATAAATTTAAAATAAAAGCTTTTGCTAGTAAATTATAATGGC
AGTTGTTAGTAGCAGTAGTTTTAGTAAATAAAAAGCCAAAAATAAATTAGCATAGCTAAC
TATTCAATTGTTTTAACTTTAATTATTTTCTTAGTGTAAAAAAATAAAGAAGCAGAAAAG
TAGATAGATTGATCGATCGATTTTTAAATGCAAAGTATAAAATCGATTTTATCAAAAAAA
AAGAAGTTGAAAATAATTAATATCAAAATTATGTATGGATGAATGGATTAGAAATATTTT
ATTTAAATTATCATGACTACCTTTGATTAAATGTGGCTCAAATAAAATTTTATATTCTAC
TAAATTAATATCAAAAGAGTCTAAACTTTTTTGATAAATAACAAAATAACTTTTTATTTG
AATGCAGTTATTAATATCATATTCTAATAAATAGTTAACATTAAGGTTTTCGGTGGTGAA
CCCGGTCCCGCTTCTACCTTGGCCCCCAAGCTCGGTCCTCTCGGTTTGAACGCTAAGAAG
GTCGGTGAAGATATCATTGCTGCTTGCAACCAACACAAGGGTATCAGAGTTATGATCCAA
CTCAAGTGCCAAAACAGAGCTGCTCAAGTTACCGTCGTTAACACCTCTTCCGCTCTTATC
ATCAAGGAACTCGGTAAGCACGTCAGAGATAGAAAGAAAACTAAGGGTATCAAGCACTCT
GGTGACCTCAGTTTGGAACAAATCAAGAAGATCGCCAAGATTATGTAAGACGAAAACAAG
AGTTTCGCCAAGACCTTCGCTGGTACTGTTAAGTCCGTCCTCGGTACTGCGTAAGAAATT
TAAACATTTTAACATTAGAATTATATATAGTTGCAATCCTTTTTTAAAGAAATAAAATAA
TAAAAAACAAAAATTAAAATAATTTTTAAATTAATTAAATAGCCAATCTATCGGTATCAC
CGTTAACAAGTTACACCCCAAGAAGGTCATTGAATAAATCAACAAGGAAGAAATTAAGAT
TTGA