Identifiers and Description
Gene Model Identifier
TTHERM_00094210Standard Name
RPC5 (RNA polymerases I and III subunit 5)Aliases
PreTt16576 | 6.m00650 | 3836.m02233Description
RPC5 DNA-directed RNA polymerase I and III subunit RPAC1; Fifth largest subunit of RNA polymerases I and III; homolog of RPC40 in yeasts and RPA40 in humans; expressed in macronucleus of vegetative cells and weakly in early stages of conjugationGenome Browser (Macronucleus)
![]()
Genome Browser (Micronucleus)
![]()
Gene Ontology Annotations
Molecular Function
- protein dimerization activity (IEA) | GO:0046983
- DNA-directed 5'-3' RNA polymerase activity (IEA) | GO:0003899
Biological Process
- transcription (IEA) | GO:0006350
Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.2%
TetraMine Data
TTHERM_00094210
WebApollo
Fullscreen View
Tetrahymena Stock Center
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_02582.1 9.997093137033517e-262 DNA-directed RNA polymerase I
polypeptide (340 aa)
Oxytricha Contig22041.0.g30 9.995094197784295e-101 RNA polymerase Rpb3/RpoA inser
t domain
DictyBase DDB_G0282339 8.003693242657371e-87 rpa5 on chromosome: 3 position
5656917 to 5658092
WormBase WBGene00019275 2.0004485223439647e-69 locus:rpac-40 status:Confirm
ed UniProt:Q9UAY9 protein_
id:CCD68663.1
SGD YPR110C 3.0000115468388957e-66 RPC40 RNA polymerase subunit A
C40, common to RNA polymerase
I and III
Stentor Coeruleus SteCoe_7522 3.0144087850653746e-40
General Information
No Data fetched for General Information
Associated Literature
- Ref:15470252: Mochizuki K, Gorovsky MA (2004) RNA polymerase II localizes in Tetrahymena thermophila meiotic micronuclei when micronuclear transcription associated with genome rearrangement occurs. Eukaryotic cell 3(5):1233-40
Sequences
>TTHERM_00094210(coding)
ATGTCAAATAAAACTTAAAAAATGAAGAAAAATATTGTCTTCACCAACGAAGGCATTCAA
CACAGCTAGGAAATGAACTATAGCGCTGCTTTTACTAGTGAAGAAGATTTCAATACATTC
AAGGAAAACATTAAAATAGAAGTTATTAGATATGATAATAAAAATAAAGAATTAGAATTT
GATTTAATGGGTGTCGATGCTCCTATTGCTAACGCTTTGAGAAGAATTATGATTGCAGAA
GTTCCTACAATGGCTATCCACAAGGTTTATATTTACTAAAATACTTCTATTATTCCTGAT
GAAGTTTTGGCTCACAGACTTGGTTTAATTCCTATTTATGCTGACCCTCGTCTTTTCGAA
GAAAAGCAAGAAGAAGACGAGTATAATGAAAAAAATTCTTTAAAGTTTACATTAAAGATT
AAATGCTCTAAGAAAGAATAGTACAAAAATTACTCTGAAGCTGATTTAGAAAATTTAACA
CCTGAAACCTACTTAGAAAATGCTATTGTCTATAGCGGTGATTTCAAATGGGTTTCTTAA
GGAGAATAAAATAAAAAATTTGAAGAGAATCCAATCAGAATGGTCCATGATAATATTATT
GTAGCTAAGTTAAGAGAAAACCAAGAAATTATTTGTGAAGTTATTTGTTAAAAGGGTATT
GGAAAAACACATGCCAAATGGTCTCCTGTTTGTACTGCTTACTATCGTTTAATGCCTGAA
ATAAACATAAATAGTGATATCACCGGAGCTAAAGCTCAAGAATTGAAAGAACGTTGCCCT
CTTAAAGTTTATGATGTTTAAAATAATAAGGCTATTGTTTCTAACGAAAGAGCTTGCACT
ATGTGCAGAGAATGCATAAGAGAAGATGAAGAATTCAATTCAAAGATTGAATTGGCCAAA
AAGAAAGAGCATTTTATTTTTACTGTAGAAAGCGTTGGAATCTACGAACCTCACGAGATA
GTAAAGGAAGCAATCTAGATATTAAAATAAAAAGCATCTAGTTTTATGCTAAACCTATGA>TTHERM_00094210(protein)
MSNKTQKMKKNIVFTNEGIQHSQEMNYSAAFTSEEDFNTFKENIKIEVIRYDNKNKELEF
DLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIYADPRLFE
EKQEEDEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLENAIVYSGDFKWVSQ
GEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIGKTHAKWSPVCTAYYRLMPE
ININSDITGAKAQELKERCPLKVYDVQNNKAIVSNERACTMCRECIREDEEFNSKIELAK
KKEHFIFTVESVGIYEPHEIVKEAIQILKQKASSFMLNL>TTHERM_00094210(gene)
ATGTCAAATAAAACTTAAAAAATGAAGAAAAATATTGTCTTCACCAACGAAGGCATTCAA
CACGTATAGATTAAAAATCATTTTTTTATTTTAAATAAAAGTGTTCAAAGAACTAAGCAA
TTTTAGCCAATTTCATCATATTTACTAAATTAGAATCTTTAATGAAGTATTTAATCAGGA
AATCTAAAAAATGATTTCTAAATTTGATGAATTAGAAAATGAATTAACAAATTTAATCAA
ATAAAAATTCTATATCAAATTTAAATGAGCTTAAACATATTTTATCTTATCAAAAGAGCT
AGGAAATGAACTATAGCGCTGCTTTTACTAGTGAAGAAGATTTCAATACATTCAAGGAAA
ACATTAAAATAGAAGTTATTAGATATGATAATAAAAATAAAGAATTAGAATTTGATTTAA
TGGGTGTCGATGCTCCTATTGCTAACGCTTTGAGAAGAATTATGATTGCAGAAGTATATT
ATTTTTCTTTTTTTCAAATTTTTAGTTTTCTTGAGCGAAAATTATCATTAGTTTCTAAAA
TACTATTAAAAATTAATAGGTTCCTACAATGGCTATCCACAAGGTTTATATTTACTAAAA
TACTTCTATTATTCCTGATGAAGTTTTGGCTCACAGACTTGGTTTAATTCCTATTTATGC
TGACCCTCGTCTTTTCGAAGAAAAGCAAGGTAAATTCATTTTATAAAATTAAAGAAGAAG
ATTTATTTATAAACAAGATTTTATAGCAATAAAAAAGTAAAGTGGATAGATAGCTAAATT
AATTAATTCTTAATTTTTATATAAATTATTTTATTTACTGCTTTTGAATTTAATAATAAT
CAAATTTTAAATAATAAATTTAGAAGAAGACGAGTATAATGAAAAAAATTCTTTAAAGTT
TACATTAAAGATTAAATGCTCTAAGAAAGAATAGTACAAAAATTACTCTGAAGCTGATTT
AGAAAATTTAACACCTGAAACCTACTTAGAAAATGCTATTGTAAGATAAATTTTTTGATT
TAGGAAGCGAATTTTTAAATGATCTAATACATTTTAATTAGGTCTATAGCGGTGATTTCA
AATGGGTTTCTTAAGGAGAATAAAATAAAAAATTTGAAGAGAATCCAATCAGAATGGTCC
ATGATAATATTATTGTAGCTAAGTTAAGAGAAAACCAAGAAATTATTTGTGAAGTTATTT
GTTAAAAGGGTATTGGAAAAACACATGCCAAATGGTCTCCTGTTTGTACTGCTTACTATC
GTTTAATGCCTGAAATAAACATAAATAGTGATATCACCGGAGCTAAAGCTCAAGAATTGA
AAGAACGTTGCCCTCTTAAAGTTTATGATGTTTAAAGTAATTTAAAATAATTAATATTAA
ATTAACATCAGCTAATATAAATAAAACTATCTATTTTAATAGATATTTAATATTTTTTAT
TATTCTGTAAACAAATACCAAACAAGTATCAAGTCAATTTCTGATAACTAAAAATTGATT
TCTTGCTAAATTATAATTATCAAAAAATTACTTGTTTGTTAGATATAAATAAAAAGACAC
AGCTAATACAAATCAAATATTAATTATATTCTAAAATTTATTGGTCTAAAATTATGATCT
AAAAAAAATATCTAAGACTTTATATAGCTTAAAAAATTTTTTGTTTACTTAAATTAAATT
AATTTTTATAAATAGATAATAAGGCTATTGTTTCTAACGAAAGAGCTTGCACTATGTGCA
GAGAATGCATAAGAGAAGATGAAGAATTCAATTCAAAGATTGAATTGGCCAAAAAGAAAG
AGCATTTTATTTGTAAAATATTCATTATATTTAGATTAAATTGATAGGAATTTATATAAG
AAATAATAATTTTACTGATCGGAAAGGGAAGATATAGAAAAATTAATTAATTTGGATTTA
AGCTAATTTAATATATTTATTAGTTAAAATTACAATAATTACCTTATATTAATTTATATT
TTTAATATGCAAATAGTTACTGTAGAAAGCGTTGGAATCTACGAACCTCACGAGATAGTA
AAGGAAGCAATCTAGATATTAAAATAAAAAGCATCTAGTTTTATGCTAAACCTATGA