Identifiers and Description

Gene Model Identifier

TTHERM_00370920

Standard Name

RPC34 (DNA-directed RNA polymerase III complex subunit Rpc34)

Aliases

PreTt28608 | 39.m00181 | 3693.m00028

Description

RNA polymerase Rpc34 subunit family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• nucleus (IEA) | GO:0005634

Molecular Function

• DNA binding (IEA) | GO:0003677
• DNA-directed 5'-3' RNA polymerase activity (IEA) | GO:0003899

Biological Process

• transcription (IEA) | GO:0006350

Domains

• ( PF08279 ) HTH domain
• ( PF05158 ) RNA polymerase Rpc34 subunit
• ( PF01047 ) transcriptional regulator, MarR family
• ( PF00325 ) transcriptional regulator, Crp/Fnr family

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.1%

TetraMine Data

TTHERM_00370920

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_12247.1	4.0013667688777736e-172	RNA polymerase Rpc34 subunit p rotein (295 aa)
DictyBase	DDB_G0272022	1.0002869940498747e-21	rpc34 on chromosome: 2 positio n 1182004 to 1183004
WormBase	WBGene00021112	8.000721090200152e-18	Probable DNA-directed RNA poly merase III subunit RPC6 stat us:Partially_confirmed UniPr ot:P91529 protein_id:CCD6423 4.1
Oxytricha	Contig3819.0.g3	5.997612587164444e-16	RNA polymerase Rpc34 subunit
SGD	YNR003C	0.0000000029989608248573072	RPC34 RNA polymerase III subun it C34; interacts with TFIIIB7 0 and is a key determinant in pol III recruitment by the pre initiation complex

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00370920(coding)
ATGGAAGAAGAATATTCAGAAAAGATAATTGGGATAGTGAAATCATACCAAGAGGGTATA
ACTTTAACTGAACTATTAAAGATATTAGAAGTTGATTAAAATGCCATTAAGCCAGAATTA
TAGAATTTATTAAAAGAAGGCTATTTAACTTGCACTAATGTAGGTAATGAATAAATAGTA
GAGTACCATGATCCTCAAGATTAGAAATAACTAAATGTGGCAGCAAGCGATCTACCTCAG
CAAGAATTTTAAGTTTATAAGATTATTTTCCAAGCTAAAAATAAAGGTATCGATAGAAAG
GATATAGGCAATAAAACTGGTATTGCAACGGGAACTTTAACTAAAATATTGAATTAACTT
AAGAAAAAAAATTGGATTAAATCAGTTAAAGGTGCAAATAGTACAGGAAAGGGTAAAAAT
ATATTTATTTTAAACAATCTAGAACTGTCTGAAAGTATTTCAGGTGGTATTTGGTATAAA
GATGGTGTCCTTAACAAAGATTTAATTGATGAGTTATGCTCAAAAATAGAAAACCATATG
AATCATAATCCTATAATGACTGAAGAATAAATTATTTAGTTATTAAGAGTTAATAGCTCA
ATCAATTTAGAATAAAGACATGTACTATAAATTATTAATTTATTACTTTTCGATGATAAA
ATTGAAAAAGTAAAAACAATTACAACATCAACCAATTCAAGTACAGCTTAAAAATAAGGA
ACCTCATAAATATAGAAGTATAGATTATCAAATTGGAATAAATCTAAAGACCACATTTCT
ACTATCCCAGCTTTGACAAAAACTCCGTGCGGACATTGTCCTTTAATTAACGAATGTGTT
CCTGGAGGGAAAATTTCACCAGAAAATTGTATTTATTTTAATGATTGGTGA

>TTHERM_00370920(protein)
MEEEYSEKIIGIVKSYQEGITLTELLKILEVDQNAIKPELQNLLKEGYLTCTNVGNEQIV
EYHDPQDQKQLNVAASDLPQQEFQVYKIIFQAKNKGIDRKDIGNKTGIATGTLTKILNQL
KKKNWIKSVKGANSTGKGKNIFILNNLELSESISGGIWYKDGVLNKDLIDELCSKIENHM
NHNPIMTEEQIIQLLRVNSSINLEQRHVLQIINLLLFDDKIEKVKTITTSTNSSTAQKQG
TSQIQKYRLSNWNKSKDHISTIPALTKTPCGHCPLINECVPGGKISPENCIYFNDW

>TTHERM_00370920(gene)
ATGGAAGAAGAATATTCAGAAAAGATAATTGGGATAGTGAAATCATACCAAGAGGGTATA
ACTTTAACTGAACTATTAAAGATATTAGAAGTTGATTAAAATGCCATTAAGCCAGAATTA
TAGAATTTATTAAAAGAAGGCTATTTAACTTGCACTAATGTAGGTAATGAATAAATAGTA
GAGTACCATGATCCTCAAGATTAGAAATAACTAAATGTGGCAGCAAGCGATCTACCTCAG
CAAGAATTTTAAGTTTATAAGGTAATAATAAAGTTTAAAAATGCAATAAAACTGATATTT
AATACTAAATTCTCTTTCAAATTTATGAAATAACAATAATTTTATTGACATTTCAAATAT
TTTTTGATAGACACATTAAAAAAACTGAAGCAAATAATTTAGGAAATTTGTGAATATGGT
ATATTGAATAAAAATAAATATCTAAGATTACCTTAAAAAGATAGTAAATGTATTAATAAT
ATAAAATTATACTTGATTTTCTACATAATAGATCTTATCCTATCATAGTTTATCTTTAAA
AAGATGATTTTTAGGCTAACTTCAAATTAATTATTATTTATAGCAAAAGAAATTGTTATT
TAATAAATTACTTAAATAATAAATTCTTGTTTGGATACACTGTTAAAACTTTATTTTTTA
AATTAAAATAAAATAGATTATTTTCCAAGCTAAAAATAAAGGTATCGATAGAAAGGATAT
AGGCAATAAAACTGGTATTGCAACGGGAACTTTAACTAAAATATTGAATTAACTTAAGAA
AAAAAATTGGATTAAATCAGTTAAAGGTGCAAATAGTACAGGAAAGGGTAAAAATATATT
TATTTTAAACAATCTAGAACTGTCTGAAAGTATTTCAGGTGGTATTTGGTATAAAGATGG
TGTCCTTAACAAAGATTTAATTGATGAGTTATGCTCAAAAATAGAAAACCATATGAATCA
TAATCCTATAATGACTGAAGAATAAATTATTTAGTTATTAAGAGTTAATAGCTCAATCAA
TTTAGAATAAAGACATGTACTATAAATTATTAATTTATTACTTTTCGATGATAAAATTGA
AAAAGTAAAAACAATTACAACATCAACCAATTCAAGTACAGCTTAAAAATAAGGAACCTC
ATAAATATAGAAGTATAGATTATCAAATTGGAATAAATCTAAAGACCACATTTCTACTAT
CCCAGCTTTGACAAAAACTCCGTGCGGACATTGTCCTTTAATTAACGAATGTGTTCCTGG
AGGGAAAATTTCACCAGAAAATTGTATTTATTTTAATGATTGGTGA