Identifiers and Description

Gene Model Identifier

TTHERM_00579280

Standard Name

RPC25 (DNA-dependent RNA polymerase III subunit Rpc25 )

Aliases

PreTt05821 | 78.m00193 | 3733.m00088

Description

RPC25 RNA polymerase Rpb7 amine-terminal domain protein; DNA-dependent RNA polymerase III subunit

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• DNA-directed 5'-3' RNA polymerase activity (IEA) | GO:0003899

Biological Process

• transcription (IEA) | GO:0006350

Domains

• ( TIGR00448 ) DNA-directed RNA polymerase
• ( PF08292 ) RNA polymerase III subunit Rpc25
• ( PF03876 ) RNA polymerase Rpb7, N-terminal domain
• ( PF03293 ) poxvirus DNA-directed RNA polymerase, 18

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.9%

TetraMine Data

TTHERM_00579280

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_16339.1	1.9992982665753866e-121	RNA polymerase Rpb7 domain-con taining protein (217 aa)
SGD	YKL144C	0.00000000002000577768187062	RPC25 RNA polymerase III subun it C25, required for transcrip tion initiation; forms a heter odimer with Rpc17p; paralog of Rpb7p
WormBase	WBGene00014111	0.00000000007999955850159168	locus:rpc-25 status:Partiall y_confirmed UniProt:Q23645 protein_id:CAA94858.1
DictyBase	DDB_G0273425	0.000000009996807949091551	rpc25-1 on chromosome: 2 posit ion 2980579 to 2981451
Oxytricha	Contig21831.0.g92	0.000000009996807949091551	SHS2 domain found in N terminu s of Rpb7p/Rpc25p/MJ0397

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00579280(coding)
ATGTTTATTTTATGCACTAAAAGAGAAAAGATCAGACTTAAACCTGACAGTCTTGGAAAG
GATTACCAAAAAAACATTACAAAATTATTATATGAAACATATTTATTCAAGGCAATTAAT
GAAAATGAGGTTATTGTAGCTATTAAAGATGTTACTCTGTATGATGGATTTGTAGAATAA
GTAACAGGAGAAGTCGTTTTCGAAATCTAAATGACTTATCTCGTCCAGTAAATAGTTTAA
AATGAAGTCTATGAAGGAACAATCGTTTCATAAAATGCTAAAGGAATTACTGTTAAATTT
GGATAGCTCTAGGCTTTTATTGGTAAACATCTACTTCAGCCAAACTCTACATTTTTCAAG
GATAAAAACGAATGGATTTGGTAGAATGATGAAGAAGACAGCTCTAGCGTGCTCTTCTAT
GAAGCAGATGCTTAGGTTAAATTCAAAATATTTGCCATTAATTTCTTGGCGAAGATTGAC
GAAGTTAACCCAGAAGGATAAAAGCAAATCATAGGTGCGATGAATGAAGATGGCCTTGGT
TTGATATAATGGTGGGATTTCTGA

>TTHERM_00579280(protein)
MFILCTKREKIRLKPDSLGKDYQKNITKLLYETYLFKAINENEVIVAIKDVTLYDGFVEQ
VTGEVVFEIQMTYLVQQIVQNEVYEGTIVSQNAKGITVKFGQLQAFIGKHLLQPNSTFFK
DKNEWIWQNDEEDSSSVLFYEADAQVKFKIFAINFLAKIDEVNPEGQKQIIGAMNEDGLG
LIQWWDF

>TTHERM_00579280(gene)
ATGTTTATTTTATGCACTAAAAGAGAAAAGATCAGACTTAAACCTGACAGTCTTGGAAAG
GATTACCAAAAAAACATTACAAAATTATTATATGAAACATATTTATTCAAGGTGCGAACT
ATTTACTAAATTAACCAATCAATCATTAATTGCTTGAATTTAATGAATTTTTTATTTACT
AATACACTTCATATTTATTAATACAAAATATTATTCAAAAGGCAATTAATGAAAATGAGG
TTATTGTAGCTATTAAAGATGTTACTCTGTATGATGGATTTGTAGAATAAGTAACAGGAG
AAGTCGTTTTCGAAGTAAGTTGCGCAATTAAATTTATAGATTATAATAAATTTATTATTG
TTCAAAACTAGATCTAAATGACTTATCTCGTCCAGTAAATAGTTTAAAATGAAGTCTATG
AAGGAACAATCGTTTCATAAAATGCTAAAGGAATTACTGGTAAAATTAAAATTATTCTTT
TTTTGAAAAAATAAAAAAAACCTTAATCTACTTAATGTTTTTAATTCTCAATCAATAATT
AAATATTTCTCATTTAAATTTAATTAATTAAGTTAAATTTGGATAGCTCTAGGCTTTTAT
TGGTAAACATCTACTTCAGCCAAACTCTACATTGTATCTTTTTTCTTATATTTAATATAT
ATATTTACATTTATTTATTAATCATTACGAAATATCTTTTAATTTTTTAATTCATTTGAT
TAACTCTTCTAATAACAGCAAACTTATTTTAAAATACTTGTTTAGATAATTCAAAACGTA
TTTTTAATAGTTTTTATTTAAATTTCATACATAAAATAGTTTCAAGGATAAAAACGAATG
GATTTGGTAGAATGATGAAGAAGACAGCTCTAGCGTGCTCTTCTATGAAGCAGATGCTTA
GGTTAAATTCAAAATATTTGCCATTAATTTCTGTAATTTTAATTAATTTAAACAATTTTC
GTTTTGTATTAATAATTTTCTTTAAACAACAAAAGTGGCGAAGATTGACGAAGTTAACCC
AGAAGGATAAAAGCAAATCATAGTATTTTATTATTTTGAACATAAATTGCTTAATAAAGT
TCATGTGTAAATTTTATCTCTAAAATTCATAAAAAATAGGGTGCGATGAATGAAGATGGC
CTTGGTTTGATATAATGGTGGGATTTCTGA