Identifiers and Description

Gene Model Identifier

TTHERM_00444250

Standard Name

RPC11 (RNA polymerase III complex subunit Rpc11 )

Aliases

PreTt03793 | 51.m00159 | 3704.m00014

Description

RNA polymerase III complex subunit

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• obsolete transcription regulator activity (IEA) | GO:0030528
• zinc ion binding (IEA) | GO:0008270
• nucleic acid binding (IEA) | GO:0003676

Biological Process

• regulation of transcription (IEA) | GO:0045449

Domains

• ( PF08274 ) PhnA Zinc-Ribbon
• ( TIGR01384 ) transcription factor S
• ( PF02150 ) RNA polymerases M/15 Kd subunit
• ( PF01096 ) transcription factor S-II (TFIIS)

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 25.1%

TetraMine Data

TTHERM_00444250

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_10934.1	1.000296925633081e-74	hypothetical protein (109 aa)
Oxytricha	Contig10554.0.g23	0.0000000000005000841553255702	Transcription factor S-II (TFI IS)
WormBase	WBGene00022309	0.000000000003001226732525078	locus:rpc-11 DNA-directed RN A polymerase subunit status: Partially_confirmed UniProt: Q9N4B7 protein_id:CCD72590.1
SGD	YDR045C	0.00000000030007160092483236	RPC11 RNA polymerase III subun it C11; mediates pol III RNA c leavage activity and is import ant for termination of transcr iption; homologous to TFIIS
DictyBase	DDB_G0287707	0.000000004999139696582238	rpc11 on chromosome: 5 positio n 584047 to 584459

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00444250(coding)
ATGAATTTCTGTCCTTTATGCGCTAATGCTCTTATTATTCAGAATGTTGGAGGAAATAAT
AGATTTTCTTGTAGAACATGTACATATTTTTATCCACTACTAAAGAAAATAGAAACAGTA
ACATACTCTAGAATGGTTAAAGATGATACTATTCATGATATTTCTCTATAAAAAGAATCT
CTATAAACTGATAAAGATATGATTTGCCCTGCTTGTGAGAAGAGAGGTGCCTATATAAGA
CTGGAATAAGATAGAAGTCTTGATGAAGGCTAAACATAACATTATATTTGTAAAAATTGC
TCACATACTTGGAAAGATATGGGGTGA

>TTHERM_00444250(protein)
MNFCPLCANALIIQNVGGNNRFSCRTCTYFYPLLKKIETVTYSRMVKDDTIHDISLQKES
LQTDKDMICPACEKRGAYIRLEQDRSLDEGQTQHYICKNCSHTWKDMG

>TTHERM_00444250(gene)
ATGAATTTCTGTCCTTTATGCGCTAATGCTCTTATTATTCAGAATGTTGGAGGAAATAAT
AGATTTTCTTGTAGAACATGTACATATTTTTATCCACTACTAAAGAAAATAGAAACAGTA
ACATACTCTAGAATGGTTAAAGATGATACTATTCATGATATTTCTCTATAAAAAGAATCT
CTATAAACTGATAAAGATAGTAATTATCAATAAATTATTTTTTTTCTTTTTAAAAATAAA
ATTATCAAGCTGATTCTTTTAAAATGTTATTAATGCAATATTTTAATAAATAAAAAAAAG
TGATTTGCCCTGCTTGTGAGAAGAGAGGTGCCTATATAAGACTGGAATAAGATAGAAGTC
TTGATGAAGGCTAAACATAACATTATATTTGTAAAAATTGCTCACATACTTGGAAAGATA
TGGGGTGA