Identifiers and Description

Gene Model Identifier

TTHERM_00421170

Standard Name

RPB6 (RNA polymerase II subunit 6)

Aliases

PreTt07241 | 46.m00296 | 3679.m00146

Description

Subunit shared in RNA polymerases I, II & III

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• DNA binding (IEA) | GO:0003677
• DNA-directed 5'-3' RNA polymerase activity (IEA) | GO:0003899

Biological Process

• transcription, DNA-templated (IEA) | GO:0006351

Domains

• ( PF01192 ) RNA polymerases K / 14

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.4%

TetraMine Data

TTHERM_00421170

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_10954.1	2.9996910481190226e-100	RNA polymerase K/14 to 18 kDa subunit protein (164 aa)
Oxytricha	Contig8949.0.g106	9.997975313387782e-28	RNA polymerase Rpb6
SGD	YPR187W	2.000130478826482e-26	RPO26 RNA polymerase subunit A BC23, common to RNA polymerase s I, II, and III; part of cent ral core; similar to bacterial omega subunit
WormBase	WBGene00007355	9.996273942859018e-26	locus:rpb-6 Probable DNA-dir ected RNA polymerases I, II, a nd III subunit RPABC2 status :Confirmed UniProt:Q17684 protein_id:CAA90053.1
DictyBase	DDB_G0291037	3.001290106883431e-24	rpb6 on chromosome: 5 position 4838044 to 4838564
Stentor Coeruleus	SteCoe_17283	0.00000000000003442477108469977

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00421170(coding)
ATGAGCGACTACGGTGATAACGATTACTCTGATCCTGGTAATTTTGATGAGGATAATATG
GGAGATGACATGGATGATGGAGATCAAGAATCTGAAGAAGCCTCTTCCAGATCCGGAGAT
GAGGGTGATTCAGCTGATGATTCTGATCACTCTGGAACTGAATCTGAAAGTTAATCTGAA
GTCGATAAGGACGAATATCCTGAAGAAATGGTTATCATAAAAGATTAAGATAGAGATTAA
TAAGCAAGTAAAACCAAAGTAACACCTCCTTTCCTCACAAAATATGAAAAAGCCAGAATT
ATTGGAACACGCGCCTTATAAATTGCTCAAAACTCTCCAATCTATGTAGAAACAGATGAC
AAGGACTATGATCCTATTGCTATTGCCGAAAAAGAGTTTGTCTAGAAAAAGATCCCCTTT
ATTATTAGAAGATATCTTCCCAATAAAGAATATGAAGATTGGGCTCTCGATGAATTAGAA
GTCTTAGATTGA

>TTHERM_00421170(protein)
MSDYGDNDYSDPGNFDEDNMGDDMDDGDQESEEASSRSGDEGDSADDSDHSGTESESQSE
VDKDEYPEEMVIIKDQDRDQQASKTKVTPPFLTKYEKARIIGTRALQIAQNSPIYVETDD
KDYDPIAIAEKEFVQKKIPFIIRRYLPNKEYEDWALDELEVLD

>TTHERM_00421170(gene)
ATGAGCGACTACGGTGATAACGATTACTCTGATCCTGGTAATTTTGATGAGGATAATATG
GGAGATGACATGGATGATGGAGATCAAGAATCTGAAGAAGCCTCTTCCAGATCCGGAGAT
GAGGGTGATTCAGCTGATGATTCTGATCACTCTGGAACTGAATCTGAAAGTTAATCTGAA
GTCGATAAGGACGAATATCCTGAAGAAATGGTTATCATAAAAGATTAAGATAGAGATTAA
TAAGCAAGTAAAACCAAAGTAACACCTCCTTTCCTCACAAAATATGAAAAAGCCAGAATT
ATTGGAACACGCGCCTTATAAATTGCTCAAAACTCTCCAATCTATGTAGAAACAGATGAC
AGTAATATAAAAATTATTTTTTTTTAAGCTTGACAGAAATAGATTACCGAAATTAGAAAA
CAAGAATATTTAGAATACCAAACTGCAATTTAATGAAAATAGCTAAGTATTTTCCTTATT
TCGATAGCATAAATAACAATTTAAGTATTTATTTGCAAGAGATAGCAAAATAATTTAAAT
TTATGGAACAAATATGAAAATGATGAAAATAAATAATAAAAAAAAACAAAATTTTTTAAA
AGGAATGAACAAAGATAGTTTTATTTCAAGCAAAAATTTGATTTTAATTTGAATATAAAT
AAAATAATTTATTTATTTTAAATAAAACAGAGGACTATGATCCTATTGCTATTGCCGAAA
AAGAGTTTGTCTAGAAAAAGATCCCCTTTATTATTAGAAGATATCTTCCCAATAAAGAAT
ATGAAGATTGGGCTCTCGATGAATTAGAAGTCTTAGATTGA