Identifiers and Description

Gene Model Identifier

TTHERM_00941450

Standard Name

RPB5 (RNA polymerase II subunit 5)

Aliases

PreTt25151 | 171.m00060

Description

Subunit shared in RNA polymerases I, II & III

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• DNA binding (IEA) | GO:0003677
• DNA-directed 5'-3' RNA polymerase activity (IEA) | GO:0003899

Biological Process

• transcription (IEA) | GO:0006350

Domains

• ( PF01191 ) RNA polymerase Rpb5, C-terminal domain
• ( PF03871 ) RNA polymerase Rpb5, N-terminal domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 12.3%

TetraMine Data

TTHERM_00941450

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_19596.1	7.996706633065278e-159	RNA polymerase Rpb5 domain-con taining protein (277 aa)
WormBase	WBGene00019246	6.999211576891585e-27	locus:rpb-5 DNA-directed RNA polymerases I, II, and III su bunit RPABC1 status:Confirme d UniProt:Q9N5K2 protein_i d:CCD72467.1
DictyBase	DDB_G0291636	9.998720540547892e-23	rpb5 on chromosome: 6 position 457932 to 458567
Oxytricha	Contig486.1.g67	9.998720540547892e-23	RNA polymerase Rpb5, C-termina l domain
SGD	YBR154C	1.0002869940498747e-21	RPB5 RNA polymerase subunit AB C27, common to RNA polymerases I, II, and III; contacts DNA and affects transactivation

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00941450(coding)
ATGAGCGAGGATTAGAGAAAGAGTGCCTAAAAGTGGTTTAAGGTTTACCGCACTATTTGC
GAAATGGCCAGAGATAGAGGATACAGCGAAGAAGCTGAGCAATAGTTGAATCTGATTAAA
ACTAAGGAATAGGAAAATATGTGGATTTAAAACAGCATGTCTAACGTTCAAAACAGTTTA
ACCATAAATTCTTTTTCACATGATGCTAACCAAACTGATGAACACAAATTTTTAGGAATG
GAATAGCACCTTTACGTTTTCCATAGCTAAACTAAGTTAACCGATGATATACTTAGCTCA
TATGATAAGACTATTTAAAAATATCACGAGTCTTCTATTAAAAACAATCCTTAATTGAAC
GTTTTTATTAATGTTGTTATTCTTGTCCCAGAAGAAAAAGATATCGTCACTAAGAAAGTT
TAAGATATCATTCTCATCTCAAACAAGTATTTTAAAGATAGAATTGAACTCTTTGAAAAG
AGATAGGTTGAAATGAACTTCAACAGTAAAAAGTAAACTGATATTAAATCTGAAACAGAT
GATAAAGGCGATGTCATTTAAATCTTCTATAAATATGAAATTTTCTTCTTTGATGATCTT
GTCATTAACATCACCAAGCATCAATTAGTTCCTAAGCACGTACCCTTGAATGCCATCGAA
AAGAAAAAATTAATGGATAAATACAAAATTAACGATGCTTAACTCCCTAAGATCCTTTCC
ACCGACCCAATTACAAAATATTTTGGATTAAGGACAAAGCAAGTTTTCAAAATAGAAAGA
GATTCTGAAACTGCTGGTAAATATATTACTTATAGAATTGTTAGTTGA

>TTHERM_00941450(protein)
MSEDQRKSAQKWFKVYRTICEMARDRGYSEEAEQQLNLIKTKEQENMWIQNSMSNVQNSL
TINSFSHDANQTDEHKFLGMEQHLYVFHSQTKLTDDILSSYDKTIQKYHESSIKNNPQLN
VFINVVILVPEEKDIVTKKVQDIILISNKYFKDRIELFEKRQVEMNFNSKKQTDIKSETD
DKGDVIQIFYKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILS
TDPITKYFGLRTKQVFKIERDSETAGKYITYRIVS

>TTHERM_00941450(gene)
ATGAGCGAGGATTAGAGAAAGAGTGCCTAAAAGTGGTTTAAGGTTTACCGCACTATTTGC
GAAATGGCCAGAGATAGAGGTAATCTAATTTAACTAATAAATTAAATAACTCTTAGTTCG
AAATATGCATACTTTCATTTCAAAATTTTCAGATGATCGTAGTGCACAATATTGTTAAAA
AAAGCCTTTTGTATAAAAGATAAGTGTATTAATAAGATTTTATGCAAGCGAATGATAAGC
AAAATTAATTAATTAAAATATTTTTCAGAAACAAAATAAAAAGATTAAGTTTGTTGATAA
ATAAACTGCAACTATAAAATAAATAATCTGAATTTAGCTATTTAATTGAATTTTTTATCT
TGCTAATTAAAGGATACAGCGAAGAAGCTGAGCAATAGTTGAATCTGATTAAAACTAAGG
AATAGGAAAATATGTGGATTTAAAACAGCATGTCTAACGTTCAAAACAGTTTAACCATAA
ATTCTTTTTCACATGATGCTAACCAAACTGATGAACACAAATTTTTAGGAATGGAATAGC
ACCTTTACGTTTTCCATAGCTAAACTAAGTTAACCGATGATATACTTAGCTCATATGATA
AGACTATTTAAAAATATCACGAGTCTTCTATTAAAAACAATCCTTAATTGAACGTTTTTA
TTAATGTTGTTATTCTTGTCCCAGAAGAAAAAGATATCGTCACTAAGAAAGTTTAAGATG
TACTTAAATTTTTTATTTCTAGACACATTGCTTTCTACTTGATTTTATTATATTAATAAA
TTAATAAATAAATAAATTGGATTATTAGAATTATTTTATTTTAGAATATCTTATTAAAAT
AATTTGAAAAATTTACTAAAAACATTTTTAATCAATAATAATTATAGATCATTCTCATCT
CAAACAAGTATTTTAAAGATAGAATTGAACTCTTTGAAAAGAGATAGGTTGAAATGAACT
TCAACAGTAAAAAGTAAACTGATATTAAATCTGAAACAGATGATAAAGGCGATGTCATTT
AAATCTTCTATAAATATGAAATTTTCTTCTTTGATGATCTTGTCATTAACATCACCAAGC
ATCAATTAGTTCCTAAGCACGTACCCTTGAATGCCATCGAAAAGAAAAAATTAATGGATA
AATAGTAAAAAAATATTTTTTTTATTTGTATTTCGTTTAAACAATTTTTTTAATAAAAGC
AAAATTAACGATGCTTAACTCCCTAAGATCCTTTCCACCGACCCAATTACAAAATATTTT
GGATTAAGGACAAAGCAAGTAATAAATTTAAAATAAAAAATAAATGGCAATAATATTAAT
TATTAACTATAAATTTACTAGGTTTTCAAAATAGAAAGAGATTCTGAAACTGCTGGTAAA
TATATTACTTATAGAATTGTTAGTTGA