Identifiers and Description
Gene Model Identifier
TTHERM_00941450Standard Name
RPB5 (RNA polymerase II subunit 5)Aliases
PreTt25151 | 171.m00060Description
RPB5 RNA polymerase Rpb5 carboxy-terminal domain protein; Subunit shared in RNA polymerases I- II & IIIGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Molecular Function
- DNA-directed 5'-3' RNA polymerase activity (IEA) | GO:0003899
- DNA binding (IEA) | GO:0003677
Biological Process
- transcription (IEA) | GO:0006350
Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 12.3%
TetraMine Data
TTHERM_00941450
WebApollo
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Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_19596.1 7.996706633065278e-159 RNA polymerase Rpb5 domain-con
taining protein (277 aa)
WormBase WBGene00019246 6.999211576891585e-27 locus:rpb-5 DNA-directed RNA
polymerases I, II, and III su
bunit RPABC1 status:Confirme
d UniProt:Q9N5K2 protein_i
d:CCD72467.1
DictyBase DDB_G0291636 9.998720540547892e-23 rpb5 on chromosome: 6 position
457932 to 458567
Oxytricha Contig486.1.g67 9.998720540547892e-23 RNA polymerase Rpb5, C-termina
l domain
SGD YBR154C 1.0002869940498747e-21 RPB5 RNA polymerase subunit AB
C27, common to RNA polymerases
I, II, and III; contacts DNA
and affects transactivation
General Information
No Data fetched for General Information
Associated Literature
No Data fetched for Associated Literature
Sequences
>TTHERM_00941450(coding)
ATGAGCGAGGATTAGAGAAAGAGTGCCTAAAAGTGGTTTAAGGTTTACCGCACTATTTGC
GAAATGGCCAGAGATAGAGGATACAGCGAAGAAGCTGAGCAATAGTTGAATCTGATTAAA
ACTAAGGAATAGGAAAATATGTGGATTTAAAACAGCATGTCTAACGTTCAAAACAGTTTA
ACCATAAATTCTTTTTCACATGATGCTAACCAAACTGATGAACACAAATTTTTAGGAATG
GAATAGCACCTTTACGTTTTCCATAGCTAAACTAAGTTAACCGATGATATACTTAGCTCA
TATGATAAGACTATTTAAAAATATCACGAGTCTTCTATTAAAAACAATCCTTAATTGAAC
GTTTTTATTAATGTTGTTATTCTTGTCCCAGAAGAAAAAGATATCGTCACTAAGAAAGTT
TAAGATATCATTCTCATCTCAAACAAGTATTTTAAAGATAGAATTGAACTCTTTGAAAAG
AGATAGGTTGAAATGAACTTCAACAGTAAAAAGTAAACTGATATTAAATCTGAAACAGAT
GATAAAGGCGATGTCATTTAAATCTTCTATAAATATGAAATTTTCTTCTTTGATGATCTT
GTCATTAACATCACCAAGCATCAATTAGTTCCTAAGCACGTACCCTTGAATGCCATCGAA
AAGAAAAAATTAATGGATAAATACAAAATTAACGATGCTTAACTCCCTAAGATCCTTTCC
ACCGACCCAATTACAAAATATTTTGGATTAAGGACAAAGCAAGTTTTCAAAATAGAAAGA
GATTCTGAAACTGCTGGTAAATATATTACTTATAGAATTGTTAGTTGA>TTHERM_00941450(protein)
MSEDQRKSAQKWFKVYRTICEMARDRGYSEEAEQQLNLIKTKEQENMWIQNSMSNVQNSL
TINSFSHDANQTDEHKFLGMEQHLYVFHSQTKLTDDILSSYDKTIQKYHESSIKNNPQLN
VFINVVILVPEEKDIVTKKVQDIILISNKYFKDRIELFEKRQVEMNFNSKKQTDIKSETD
DKGDVIQIFYKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILS
TDPITKYFGLRTKQVFKIERDSETAGKYITYRIVS>TTHERM_00941450(gene)
ATGAGCGAGGATTAGAGAAAGAGTGCCTAAAAGTGGTTTAAGGTTTACCGCACTATTTGC
GAAATGGCCAGAGATAGAGGTAATCTAATTTAACTAATAAATTAAATAACTCTTAGTTCG
AAATATGCATACTTTCATTTCAAAATTTTCAGATGATCGTAGTGCACAATATTGTTAAAA
AAAGCCTTTTGTATAAAAGATAAGTGTATTAATAAGATTTTATGCAAGCGAATGATAAGC
AAAATTAATTAATTAAAATATTTTTCAGAAACAAAATAAAAAGATTAAGTTTGTTGATAA
ATAAACTGCAACTATAAAATAAATAATCTGAATTTAGCTATTTAATTGAATTTTTTATCT
TGCTAATTAAAGGATACAGCGAAGAAGCTGAGCAATAGTTGAATCTGATTAAAACTAAGG
AATAGGAAAATATGTGGATTTAAAACAGCATGTCTAACGTTCAAAACAGTTTAACCATAA
ATTCTTTTTCACATGATGCTAACCAAACTGATGAACACAAATTTTTAGGAATGGAATAGC
ACCTTTACGTTTTCCATAGCTAAACTAAGTTAACCGATGATATACTTAGCTCATATGATA
AGACTATTTAAAAATATCACGAGTCTTCTATTAAAAACAATCCTTAATTGAACGTTTTTA
TTAATGTTGTTATTCTTGTCCCAGAAGAAAAAGATATCGTCACTAAGAAAGTTTAAGATG
TACTTAAATTTTTTATTTCTAGACACATTGCTTTCTACTTGATTTTATTATATTAATAAA
TTAATAAATAAATAAATTGGATTATTAGAATTATTTTATTTTAGAATATCTTATTAAAAT
AATTTGAAAAATTTACTAAAAACATTTTTAATCAATAATAATTATAGATCATTCTCATCT
CAAACAAGTATTTTAAAGATAGAATTGAACTCTTTGAAAAGAGATAGGTTGAAATGAACT
TCAACAGTAAAAAGTAAACTGATATTAAATCTGAAACAGATGATAAAGGCGATGTCATTT
AAATCTTCTATAAATATGAAATTTTCTTCTTTGATGATCTTGTCATTAACATCACCAAGC
ATCAATTAGTTCCTAAGCACGTACCCTTGAATGCCATCGAAAAGAAAAAATTAATGGATA
AATAGTAAAAAAATATTTTTTTTATTTGTATTTCGTTTAAACAATTTTTTTAATAAAAGC
AAAATTAACGATGCTTAACTCCCTAAGATCCTTTCCACCGACCCAATTACAAAATATTTT
GGATTAAGGACAAAGCAAGTAATAAATTTAAAATAAAAAATAAATGGCAATAATATTAAT
TATTAACTATAAATTTACTAGGTTTTCAAAATAGAAAGAGATTCTGAAACTGCTGGTAAA
TATATTACTTATAGAATTGTTAGTTGA