Gene Model Identifier
TTHERM_00193849
Standard Name
RPB3
Aliases
16.m05348 | cnjC
Description
DNA-directed rna polymerase II subunit
Genome Browser (Macronucleus)
Genome Browser (Micronucleus)
Molecular Function Biological Process
( PF00037 ) 4Fe-4S binding domain
( PF01193 ) RNA polymerase Rpb3/Rpb11 dimerisation domain
( PF01000 ) DNA-directed RNA polymerase, alpha subunit,
Tetrahymena Functional Genomics Database:
Signal Peptide Present?: No
TTHERM_00193849
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( SD01935 ) Micronucleus: RPB3 coding replaced by GFP sequence, neo3 in 3’ flanking region. Heterozygous ( SD01936 ) Micronucleus: RPB3 coding replaced by GFP sequence, neo3 in 3’ flanking region. Heterozygous ( SD02653 ) Micronucleus: GFP replaces RPB3 coding, neo3 in 3’flanking region. homozygous ( SD02654 ) Micronucleus: GFP replaces RPB3 coding, neo3 in 3’ flanking region. homozygous ( SD01817 ) Macronucleus: Complete replacement of RPB3 with c-terminal HA tag and neo3 in 3’ flanking region
(v.2006 protein sequences)
Source Identifier Score Description
Tetrahymena borealis EI9_03659.1 9.997093137033517e-262 DNA-directed RNA polymerase II
DictyBase DDB_G0292244 9.997863464222902e-69 rpb3 on chromosome: 6 position
Oxytricha Contig8173.0.g80 8.99739772315193e-58 RNA polymerase Rpb3/RpoA inser
SGD YIL021W 2.00017271388466e-38 RPB3 RNA polymerase II third l
WormBase WBGene00007971 3.9997566980151843e-38 locus:rpb-3 status:Partially
Stentor Coeruleus SteCoe_22357 3.975449735908647e-31
No Data fetched for General Information
Ref:15470252 : Mochizuki K, Gorovsky MA (2004) RNA polymerase II localizes in Tetrahymena thermophila meiotic micronuclei when micronuclear transcription associated with genome rearrangement occurs. Eukaryotic cell 3(5):1233-40Ref:10704239 : Larsen LK, Andreasen PH, Dreisig H, Palm L, Nielsen H, Engberg J, Kristiansen K (1999) Cloning and characterization of the gene encoding the highly expressed ribosomal protein l3 of the ciliated protozoan Tetrahymena thermophila. Evidence for differential codon usage in highly expressed genes. Cell biology international 23(8):551-60Ref:2112240 : Martindale DW (1990) A conjugation-specific gene (cnjC) from Tetrahymena encodes a protein homologous to yeast RNA polymerase subunits (RPB3, RPC40) and similar to a portion of the prokaryotic RNA polymerase alpha subunit (rpoA). Nucleic acids research 18(10):2953-60
>TTHERM_00193849(protein)M E G I K L T L T N L E E F K C E F T L E N C D I S L A N S L R R I L L A E I E T I A I H N V K V Y E N T S S L P D E Y I A H R L G L I P L N S A K V D D Y N Y I W N C N C Q G E C D R C T I H F D L R V S N F T N E V L E V T S L D L K Q R Q D H T D E D A V R P I K V Y S I L R D E Y G N K R E V G I P I I K L S K G Q Q I H F E C E A Q K G I G K M H S K W N P V C I S T F S V E P E I I F D Q E I Q N L D I E Q K K A L V N A C P T K V F G I N P H T N T L E V Q D H M K C M Y C E E C V Y K C A E D F Q K P K L I K I D H K K D K F F F K V E T T G V M K P V E V L R R G F S T L R Q K L D F M R E Q I Q E N S N N Q F E Y G N E >TTHERM_00193849(coding)ATG GAA GGA ATT AAA TTA ACT CTT ACA AAC CTC GAA GAA TTC AAA TGC GAA TTT ACC CTA GAA AAT TGC GAT ATC TCA TTA GCT AAT TCA TTA AGA AGA ATT CTT TTG GCT GAA ATT GAA ACA ATA GCT ATC CAT AAC GTT AAA GTA TAT GAG AAT ACA TCT TCT CTT CCT GAT GAA TAC ATA GCA CAT AGA TTA GGT TTA ATT CCT TTA AAT TCT GCT AAA GTT GAT GAT TAT AAC TAT ATT TGG AAT TGC AAT TGC CAA GGT GAA TGC GAT AGA TGT ACA ATT CAT TTT GAT TTG AGA GTG AGT AAC TTT ACA AAT GAA GTC TTA GAA GTT ACT TCT CTT GAT CTT AAA TAA AGA TAG GAC CAC ACT GAT GAA GAT GCC GTT CGC CCT ATA AAG GTA TAT TCA ATT TTA CGT GAT GAA TAT GGA AAT AAG AGA GAA GTA GGT ATT CCT ATT ATC AAG CTA TCT AAA GGA CAA TAA ATT CAC TTT GAA TGT GAA GCC TAG AAA GGT ATC GGT AAA ATG CAT TCT AAA TGG AAT CCA GTA TGT ATT TCA ACT TTC TCA GTT GAA CCT GAA ATT ATT TTC GAT CAA GAA ATT TAA AAT TTA GAT ATT GAA TAG AAG AAA GCT CTA GTA AAT GCA TGT CCT ACT AAA GTA TTT GGT ATC AAT CCT CAT ACC AAT ACT TTG GAA GTC TAA GAT CAC ATG AAA TGT ATG TAT TGT GAA GAA TGT GTT TAC AAG TGT GCT GAA GAC TTC TAA AAA CCT AAA TTA ATC AAA ATA GAC CAT AAA AAG GAT AAG TTT TTC TTC AAA GTC GAA ACT ACA GGA GTT ATG AAG CCT GTT GAA GTG TTA AGA AGA GGT TTT TCA ACC TTG AGA TAG AAG CTT GAT TTT ATG AGA GAA TAA ATC TAA GAA AAT TCT AAT AAT TAA TTT GAA TAT GGT AAC GAG TGA >TTHERM_00193849(gene)ATG GAA GGA ATT AAA TTA ACT CTT ACA AAC CTC GAA GAA TTC AAA TGC GAA TTT ACC CTA GAA AAT TGC GAT ATC TCA TTA GCT AAT TCA TTA AGA AGA ATT CTT TTG GCT GAA ATT GAA ACA ATA GCT ATC CAT AAC GTT AAA GTA TAT GAG AAT ACA TCT TCT CTT CCT GAT GAA TAC ATA GCA CAT AGA TTA GGT TTA ATT CCT TTA AAT TCT GCT AAA GTT GAT GAT TAT AAC TAT ATT TGG AAT TGC AAT TGC CAA GGT GAA TGC GAT AGA TGT ACA ATT CAT TTT GAT TTG AGA GTG AGT AAC TTT ACA AAT GAA GTC TTA GAA GTT ACT TCT CTT GAT CTT AAA TAA AGA TAG GAC CAC ACT GAT GAA GAT GCC GTT CGC CCT ATA AAG GTA TAT TCA ATT TTA CGT GAT GAA TAT GGA AAT AAG AGA GAA GTA GGT ATT CCT ATT ATC AAG CTA TCT AAA GGA CAA TAA ATT CAC TTT GAA TGT GAA GCC TAG AAA GGT ATC GGT AAA ATG CAT TCT AAA TGG AAT CCA GTA TGT ATT TCA ACT TTC TCA GTT GAA CCT GAA ATT ATT TTC GAT CAA GAA ATT TAA AAT TTA GAT ATT GAA TAG AAG AAA GCT CTA GTA AAT GCA TGT CCT ACT AAA GTA TTT GGT ATC AAT CCT CAT ACC AAT ACT TTG GAA GTC TAA GAT CAC ATG AAA TGT ATG TAT TGT GAA GAA TGT GTT TAC AAG TGT GCT GAA GAC TTC TAA AAA CCT AAA TTA ATC AAA ATA GAC CAT AAA AAG GAT AAG TTT TTC TTC AAA GTC GAA ACT ACA GGA GTT ATG AAG CCT GTT GAA GTG TTA AGA AGA GGT TTT TCA ACC TTG AGA TAG AAG CTT GAT TTT ATG AGA GAA TAA ATC TAA GAA AAT TCT AAT AAT TAA TTT GAA TAT GGT AAC GAG TGA
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