Identifiers and Description

Gene Model Identifier

TTHERM_01016100

Standard Name

RPA12 (RNA polymerase I subunit 12)

Aliases

PreTt02644 | 198.m00064 | 3746.m00328

Description

DNA-dependent RNA polymerase I subunit

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• nucleic acid binding (IEA) | GO:0003676
• obsolete transcription regulator activity (IEA) | GO:0030528
• zinc ion binding (IEA) | GO:0008270

Biological Process

• regulation of transcription (IEA) | GO:0045449

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.9%

TetraMine Data

TTHERM_01016100

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_20171.1	2.0008734984431652e-95	transcription factor S-II (TFI IS) (137 aa)
DictyBase	DDB_G0278263	9.997019043202629e-21	rpa12 on chromosome: 3 positio n 579706 to 580766
SGD	YJR063W	7.997402223525235e-19	RPA12 RNA polymerase I subunit A12.2; contains two zinc bind ing domains, and the N termina l domain is responsible for an choring to the RNA pol I compl ex
Oxytricha	Contig1475.1.g54	0.00000000000001000191320216021	Transcription factor S-II (TFI IS)
WormBase	WBGene00007616	0.000000000003001226732525078	locus:rpoa-12 DNA-directed R NA polymerase subunit status :Confirmed UniProt:O17587 protein_id:CAB02739.1

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_01016100(coding)
ATGGAAATAGATATCAAAAATTTAAATACTGCCAGTGAATTCTGCCCCTAGTGCGGTAAC
ATGATAGAAATGCCTCTTTATTCTGATAAAGTAGAATGTTCAAAGTGTGAATTCTTATGT
TCAGTCCTAGAATATAAGTGCGCTCCTATTGTTTCTAGAATTGAATTTAACTAGAAAAAG
TAATGGCTTGAGTAATATAGAGCCTCATAAAACAAAAAAATACATGGTATAGAAGAAGAA
GATTTGGAAGACAAGCACAAACACAAAAAGGCAACTTTAAAGCAAGAATGTCCTGATTGC
GGTCATGATACTCTTTACTTCTGGACAGTATAAACTCGTTCTGCTGATGAAGGTTCAACA
GTTTTCTACGAATGCTAAGATTGCAAGTTTAAGTTCACTGCAAACAACTGA

>TTHERM_01016100(protein)
MEIDIKNLNTASEFCPQCGNMIEMPLYSDKVECSKCEFLCSVLEYKCAPIVSRIEFNQKK
QWLEQYRASQNKKIHGIEEEDLEDKHKHKKATLKQECPDCGHDTLYFWTVQTRSADEGST
VFYECQDCKFKFTANN

>TTHERM_01016100(gene)
ATGGAAATAGATATCAAAAATTTAAATACTGCCAGTGAATTCTGCCCCTAGTGCGGTAAC
ATGATAGAAATGCCTCTTTATTCTGATAAAGTAGAATGTTCAAAGTGTGAATTCTTATGT
TCAGTCCTAGAATATAAGTGCGCTCCTATTGTTTCTAGAATTGAATTTAACTAGAAAAAG
TAATGGCTTGAGTAATATAGAGCCTCATAAAACAAAAAAATACATGGTATAGAAGAAGAA
GATTTGGAAGACAAGCACAAACACAAAAAGGCAACTTTAAAGCAAGAATGTCCTGATTGC
GGTCATGATACTCTTTACTTCTGGACAGTATAAACTCGTTCTGCTGATGAAGGTTCAACA
GTTTTCTACGAATGCTAAGATTGCAAGTTTAAGTTCACTGCAAACAACTGA