Identifiers and Description

Gene Model Identifier

TTHERM_00112910

Standard Name

RIO2 (RIO2 subfamily protein kinase)

Aliases

PreTt27105 | 8.m00365 | 3812.m02402

Description

serine kinase involved in the processing of the 20S pre-rRNA into mature 18S rRNA

Genome Browser (Macronucleus)

GBrowse

Genome Browser (Micronucleus)

GBrowse

Gene Ontology Annotations

Molecular Function

Biological Process

Domains

No Data fetched for Domains

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.9%

TetraMine Data

TTHERM_00112910

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_03929.19.997093137033517e-262RIO1 family protein (539 aa)
OxytrichaContig1004.1.g801.999787596754473e-118RIO1 family
DictyBaseDDB_G02820995.997605038815675e-110rio2 on chromosome: 3 position
5366397 to 5368196
WormBaseWBGene000136889.99583921019208e-96locus:riok-2 status:Confirme
d UniProt:Q95Q34 protein_i
d:CAC70109.2
SGDYNL207W2.0000012618802033e-84RIO2 Essential serine kinase i
nvolved in the processing of t
he 20S pre-rRNA into mature 18
S rRNA; has similarity to Rio1
p
Stentor CoeruleusSteCoe_224371.368539471173853e-44

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00112910(coding)
ATGAGATTAGACCCTTCATATTTAGAATATATGACAAAGGATGAATTCCGTGTCTTGACA
GCAATTGAAATCGGTATGAGAAATCATGAACTTGTACCTATGCATCTTATAGAAAGAATC
TCTCATTTAAAGAGAGTATGTGCTAGTAAAGTAGTAAAGTTACTTCTTAAAAATAAGTTT
ATTGCACATGAAAATAAAAAATTCGACGGTTATAAATTAACTTACTTGGGATATGATTAT
CTTGCTTTACAGGTTTTTATCAGAAGAGGAGCTATTAAGGAAGTATTAGGAAAAGTAGGA
TGTGGTAAAGAGTCAGATATTTATAAATGTGTAAATGAAAATGGAGATTTTGTTATCTTG
AAATTCACTCGTTTGGGCAGAACTTCATTTAGAACAATTAAAAAAAATAGAGATTATATT
TAGCATAGAACAAGTTATAGTTGGTTATATTTATCCAGACTTTCTGCTATTAAAGAATAC
ACTTTTATGGATCTTCTACATAAGAATAACTTCCCTACACCTATTCCTATTGAGTAAAAT
AGACATGGTATTGTTATGAGCTTAATTAATGGTGTTCCTATGCAAAACATTTCTGAAATT
GACAATCCAAAATATGTTTTTGACTAATGCTTTTATTTGATTAAAAGATTAGCTGAGAAT
GGACTTATCCATAGTGATTTTAATGAGTTTAACTTGATGGTAGAAGATAATGGAAAAGTT
ATTATGATTGATTTTCCTCAGATGGTTAGCACAAAGCATAAAAATGCATAATTTTACTTT
GATAGAGATGTTGAATGCATTCACGTTTTCTTTGAAAGAAGATTCAATTACCAGATTACT
GATACTCTTGATTTCAACAAAATTGCTAGATTAAATGATCTTGATGTATAAGTAAAAGCT
TCTGGATTTATCAAAAAGGAAATAAAGAATATTGATGATTTTGATATTGATTTGAGAGGT
AGTGATGATGATGGCGACGATGATAATAGTGATGATGAAAATGAATAGAATGATTTAGAT
AAAAATATAGAATAAGAAGATAGCGATAATGAAATAGAAGAATCTAATAAGAGAATACAA
AATTTAAATATCTTAAATGATGAAGATATTAGCTAAGATGAAAATGAAGAAGAGCAAAAA
AATAACAAAAAATAAAAAAAGCATCACCTTAAAAAGCAATCAAAATCAAAATCTAAAAAG
TAAAACTAAGAATAAGAAGGAAAAGATGGAGAAGATGATGAAGATAACTAAAAAAATAAC
TTTTCTCCTGATCTTTCTGAAATATCAATAGAAGATTTGAAAGAACTTTAAAAGGTAAAC
TAAGATTTATTTTCTGATGATGATAATGAAGATGATCCATTGGCTTTGAATGAGGTTAAA
GATATTAATGGAAATATTGTAGTTCCTGAATAAAAAGAGAAGAAAAAACCTAAAAAGAAA
ATGGTAGATATTGCTAATGAATAAGACCAGGATAACAAACAAGACCTAAAAGAAAAAATA
TATATTAAAGAATCAGAATTAGCTGAAAAAGCAAAGGCTTATATTTAAAGATAAGTAGAA
AAGTAATTTAAGTAAAAATATAAAATTCTTAAGAAAAATACAAAAAGCAGTAACAGTAAT
AAAGTTTTAGCTTCAGAGTATATGTGA


>TTHERM_00112910(protein)
MRLDPSYLEYMTKDEFRVLTAIEIGMRNHELVPMHLIERISHLKRVCASKVVKLLLKNKF
IAHENKKFDGYKLTYLGYDYLALQVFIRRGAIKEVLGKVGCGKESDIYKCVNENGDFVIL
KFTRLGRTSFRTIKKNRDYIQHRTSYSWLYLSRLSAIKEYTFMDLLHKNNFPTPIPIEQN
RHGIVMSLINGVPMQNISEIDNPKYVFDQCFYLIKRLAENGLIHSDFNEFNLMVEDNGKV
IMIDFPQMVSTKHKNAQFYFDRDVECIHVFFERRFNYQITDTLDFNKIARLNDLDVQVKA
SGFIKKEIKNIDDFDIDLRGSDDDGDDDNSDDENEQNDLDKNIEQEDSDNEIEESNKRIQ
NLNILNDEDISQDENEEEQKNNKKQKKHHLKKQSKSKSKKQNQEQEGKDGEDDEDNQKNN
FSPDLSEISIEDLKELQKVNQDLFSDDDNEDDPLALNEVKDINGNIVVPEQKEKKKPKKK
MVDIANEQDQDNKQDLKEKIYIKESELAEKAKAYIQRQVEKQFKQKYKILKKNTKSSNSN
KVLASEYM


>TTHERM_00112910(gene)
ATGAGATTAGACCCTTCAGTAAAGATTTATATTTAATATCAATTTAAGATGTTCAATTCC
CATTTTTAAAGTATTTAGAATATATGACAAAGGATGAATTCCGTGTCTTGACAGCAATTG
AAATCGGTATGAGAAATCATGAAGTAATTTAATTAATTTGTTATTTCTAAACTGAGTAAT
AATATTTTTTAATAAAGCTTGTACCTATGCATCTTATAGAAAGAATCTCTCATTTAAAGA
GAGTATGTGCTAGTAAAGTAGTAAAGTTACTTCTTAAAAATAAGTTTATTGCACATGAAA
ATAAAAAATGTAAGTTTTAAAAATATTTTTGCTTGATTAACAAAACTCCTACTTGATTAA
ATTGAAATTTAAAAACAAATTTATTATAATATGGACACTTATTTTAAAAAATCAAAATAG
TCGACGGTTATAAATTAACTTACTTGGGATATGATTATCTTGCTTTACAGGTACCTATTT
AGCTAATCATTTTGAAATTTATTTATCAATAAATATTTTAATAACAGGTTTTTATCAGAA
GAGGAGCTATTAAGGAAGTATTAGGAAAAGTAGGATGTGGTAAAGAGTCAGATATTTATA
AATGTGTAAATGAAAATGGAGATTTTGTTATCTTGAAATTCACTCGTTTGGGCAGAACTT
CATTTAGAACAATTAAAAAAAATAGAGATTATATTTAGCATAGAACAAGTTATAGTTGGT
TATATTTATCCAGACTTTCTGCTATTAAAGAATACACTTTTATGGATCTTCTACATAAGG
TATTTATTTTAATCAATATTTAGTATTTAGTAAGCTAAATTATTAACCATATAAATAGAA
TAACTTCCCTACACCTATTCCTATTGAGTAAAATAGACATGGTATTGTTATGAGCTTAAT
TAATGGTGTTCCTATGCAAAACATTTCTGAAATTGACAATCCAAAATATGTTTTTGACTA
ATGCTTTTATTTGATTAAAAGATTAGCTGAGGTAAAGAAATTATTAATTAATTACGTAAA
AAATATTTATATTTATTACTTTAATAAAAAAGAATGGACTTATCCATAGTGATTTTAATG
AGTTTAACTTGATGGTAGAAGATAATGGAAAAGTTATTATGATTGATTTTCCTCAGATGG
TTAGCACAAAGCATAAAAATGCATAATTTTACTTTGATAGAGATGTTGAATGCATTCACG
TTTTCTTTGAAAGAAGATTCAATTACCAGATTACTGATACTCTTGATTTCAACAAAATTG
CTAGATTAAATGATCTTGATGTATAAGTAAAAGCTTCTGGATTTATCAAAAAGGAAATAA
AGAATATTGATGATTTTGATATTGATTTGAGAGGTAGTGATGATGATGGCGACGATGATA
ATAGTGATGATGAAAATGAATAGAATGATTTAGATAAAAATATAGAATAAGAAGATAGCG
ATAATGAAATAGAAGAATCTAATAAGAGAATACAAAATTTAAATATCTTAAATGATGAAG
ATATTAGCTAAGATGAAAATGAAGAAGAGCAAAAAAATAACAAAAAATAAAAAAAGCATC
ACCTTAAAAAGCAATCAAAATCAAAATCTAAAAAGTAAAACTAAGAATAAGAAGGAAAAG
ATGGAGAAGATGATGAAGATAACTAAAAAAATAACTTTTCTCCTGATCTTTCTGAAATAT
CAATAGAAGATTTGAAAGAACTTTAAAAGGTAAACTAAGATTTATTTTCTGATGATGATA
ATGAAGATGATCCATTGGCTTTGAATGAGGTTAAAGATATTAATGGAAATATTGTAGTTC
CTGAATAAAAAGAGAAGAAAAAACCTAAAAAGAAAATGGTAGATATTGCTAATGAATAAG
ACCAGGATAACAAACAAGACCTAAAAGAAAAAATATATATTAAAGAATCAGAATTAGCTG
AAAAAGCAAAGGCTTATATTTAAAGATAAGTAGAAAAGTAATTTAAGTAAAAATATAAAA
TTCTTAAGAAAAATACAAAAAGCAGTAACAGTAATAAAGTTTTAGCTTCAGAGTATATGT
GA