Identifiers and Description

Gene Model Identifier

TTHERM_00161180

Standard Name

RFC5 (Replication factor C 5)

Aliases

PreTt28510 | 13.m00538 | 3829.m01331

Description

Subunit of Replication factor C (RF-C), which acts as a clamp loader of the proliferating cell nuclear antigen (PCNA)

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00004 ) ATPase, AAA family
• ( TIGR00678 ) DNA polymerase III, delta' subunit
• ( PF01814 ) Hemerythrin HHE cation binding domain
• ( PF07728 ) ATPase family associated with various

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 34.8%

TetraMine Data

TTHERM_00161180

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_05372.1	9.997093137033517e-262	replication factor C subunit ( 359 aa)
DictyBase	DDB_G0293702	3.0014466598835893e-101	rfc3 on chromosome: 6 position 3014705 to 3015924
Oxytricha	Contig1144.0.g118	3.9985196551577655e-99	Replication factor C C-termina l domain
SGD	YBR087W	2.9986068920536807e-84	RFC5 Subunit of heteropentamer ic Replication factor C (RF-C) , which is a DNA binding prote in and ATPase that acts as a c lamp loader of the proliferati ng cell nuclear antigen (PCNA) processivity factor for DNA p olymerases delta and epsilon
WormBase	WBGene00004339	9.996373193201036e-79	locus:rfc-3 status:Confirmed UniProt:Q18547 protein_id :CAA94339.1
Stentor Coeruleus	SteCoe_34117	2.7487850079102147e-43

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00161180(protein)
MLRGQFQKIQIIRIILLKIQVLKARDRQTERYINISYSKFFAKKQFISISTKQFKKRFIN
KKILQMEKLWVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMA
FLQEVYGNGVHKVKSEEREFKVNPNTSTTVEVNIISSNYHLDVTPADAENQDRAVIQKLI
KEVASTHQLDPNSQRRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVI
LPLRSRCLLIRVAAPSEQDVKAVVRKLNNEKNLNIPDDLACKFAKSCDYNLRAVILNLQT
QKLLKSTYNNSMEVQEPEWKKEIKNIAGIIKEHQNPAKLKEIRSKFYDLLVNCIPGDIII
KNLMYSLLDLIDQNDVHTKQEIIYYAAHHENLMNMGSKPVFHLEAFAAQCMLSYKKSILK
LKD

>TTHERM_00161180(coding)
ATGTTACGCGGTTAATTCCAAAAAATATAAATAATTAGAATTATACTTCTTAAAATCTAA
GTTTTGAAAGCTAGAGACAGGCAAACAGAAAGATATATAAATATTAGCTATTCAAAATTT
TTTGCAAAAAAATAATTTATTTCAATCAGTACAAAACAGTTTAAAAAAAGGTTTATCAAT
AAAAAGATATTATAAATGGAAAAGCTTTGGGTAGACGAAATTAGACCAAAATCACTTGAT
AAGTTAGATTATCATCCTTTGTTAACTGAAAAATTATAAAAGCTAGCTCATTCTGAAGAT
TTCCCTCATTTGTTATTATATGGACCTAATGGTGCAGGTAAAAAAACAAGAGCTATGGCT
TTCTTGCAAGAAGTTTATGGAAATGGTGTGCATAAAGTCAAATCTGAAGAAAGAGAATTT
AAAGTTAATCCAAATACAAGCACTACAGTTGAAGTTAATATAATTTCATCTAATTATCAT
TTAGATGTCACACCTGCTGATGCAGAGAATTAAGATAGAGCAGTCATTTAGAAGTTGATT
AAAGAAGTTGCTTCAACACATTAGTTAGATCCAAATTCTCAAAGACGTTTTAAAGTTATT
ATTATAAACGAAGTAGATCGTCTTACTCTTGAAGCTTAAGCCTCTCTAAGAAGAACTATG
GAAAAATATATTGGCAGATGCAGATTAATTTTGATAGCTGAAAATATTGGAAGAGTTATT
TTACCACTTAGAAGTAGATGCCTATTAATTAGAGTTGCTGCACCCTCAGAGCAAGATGTT
AAAGCTGTTGTTAGAAAGCTTAATAATGAAAAGAATTTAAATATACCTGATGATCTAGCT
TGCAAATTCGCAAAATCATGTGATTATAATTTAAGAGCAGTCATTTTAAATTTGCAAACA
CAAAAGCTACTCAAAAGTACTTACAACAATTCTATGGAGGTATAAGAGCCTGAATGGAAG
AAAGAAATTAAAAATATCGCAGGAATTATCAAAGAGCATTAAAATCCAGCAAAGTTAAAA
GAAATTAGAAGTAAATTTTATGACTTATTGGTAAATTGCATACCAGGAGATATAATTATA
AAGAATTTGATGTACAGTCTTCTTGATTTAATTGACCAAAATGATGTACATACTAAATAA
GAAATCATATACTATGCTGCTCACCATGAGAATTTGATGAATATGGGATCAAAGCCTGTC
TTCCACTTAGAAGCATTTGCTGCATAGTGCATGCTAAGCTACAAGAAATCTATATTAAAA
TTAAAAGATTGA

>TTHERM_00161180(gene)
ATGTTACGCGGTTAATTCCAAAAAATATAAATAATTAGAATTATACTTCTTAAAATCTAA
GTTTTGAAAGCTAGAGACAGGCAAACAGAAAGATATATAAATATTAGCTATTCAAAATTT
TTTGCAAAAAAATAATTTATTTCAATCAGTACAAAACAGTTTAAAAAAAGGTTTATCAAT
AAAAAGATATTATAAATGGAAAAGCTTTGGGTAGACGAAATTAGACCAAAATCACTTGAT
AAGTTAGATTATCATCCTTTGTTAACTGAAAAATTATAAAAGCTAGCTCATTCTGAAGAT
TTCCCTCATTTGTTATTATATGGACCTAATGGTGCAGGTAAAAAAACAAGAGCTATGGCT
TTCTTGCAAGAAGTTTATGGAAATGGTGTGCATAAAGTCAAATCTGAAGAAAGAGAATTT
AAAGTTAATCCAAATACAAGCACTACAGTTGAAGTTAATATAATTTCATCTAATTATCAT
TTAGATGTCACACCTGCTGATGCAGAGAATTAAGATAGAGCAGTCATTTAGAAGTTGATT
AAAGAAGTTGCTTCAACACATTAGTTAGATCCAAATTCTCAAAGACGTTTTAAAGTTATT
ATTATAAACGAAGTAGATCGTCTTACTCTTGAAGCTTAAGCCTCTCTAAGAAGAACTATG
GAAAAATATATTGGCAGATGCAGGTAAAATAATATACCAATCATTATTTAAAAATGAAAT
TTTCTAAAATATTTTGCACAATACAAAAACTCAAACAAAAAAATTCAATCCTAAAAATCT
AAAAAGAATAATTTTATTTTTCATTTCCTAAAATTTATTTTATTAAAATTATTTATTTTA
TAACTAAATAAATCCTAAAACAAATTTCTTTATTGACATAAAAGTAATTACAAATATTTT
GATCAGAAAAGTAGAAATACAAAATATTAAACAAATTAGATATCTATCTTAAAATAATTC
CCATTATATAATACTTAGCATAATAAATATTTTATAAAGTCAATCAAAAACTTAGATGAG
ATTTCTAAATAAAATAAAATTAGATATTCTATGAAGTCAATAATAATGATATCAACAAAT
AATATAAATAGAAGTATAAATAATTATCTGAATTACTATTTGATTTGTATAAAATTAAAA
AGAAACTAGATTAAAAAAATAATTTTTTAATTTTCAAGTTTTGAGAGTTATGATAAAAAT
AAAAGGTTATTTGTTTTAGATAAAAGTAAAATAAATCCTAAATCAAATAACTTTATTAAC
ACAAAAATACTAGCAAATATTTTGATCAGAAAAGTAGAAATAAAAAATATTAAAAAACAT
TTAAATTAGATATTTTATAGTCATCCCATTATGTCATTTTGAGAATAATAAAGATATTTT
AAAGTCAACAAAAACTTAGCTGAGATTTATAAACTAAATTTATTTGGATATTTTAAATTT
GTAAATAATAATAGATATCGAGAAAAACAATAAATAGAAGTTTAAAATAATTATCTGAGT
TATTATTAGCTACATAAAAAATAGTGATAAAAATATTAAGAAGTTAAATATTTTTTTAAA
TAATTTTGAAGAGTTATCATAATTATATAAAGATATAACCCCTTGTTTTTGAACAATAAA
TAAAATAACATAGAAAATATAATTTAGATTATTTATCAAATTAAAAATCAATTTTTTATG
AGTCCTAAAACATAAATCTATAATTCAATAATAATTCAATCAATTCAAATCAAAAAATAT
TATTTTTAATAATAAATTCAATGATAATTATAATTTAAAAAGATAATTTTTTTTTATAAA
ATATTTTATGAGCAATTATTTGATAGTTTTAAGCAAAAATATAATTTATCTTTTTGATTC
ATAAAACAATTATTTGAGTAAAATAAAATTGCATAATTGTTCTTTTTTATATAGGATTTT
TTTCTATAACAAATTTTAATCAGATATTTTCTATAACTTACAAATTCTAAATAAAATTAA
TACTTTTACACTGAATTTAAAACAAGTAACTTATCAATTTTTTATAATATTGATTAATTT
ACAGTTTAAAATGTAAGAGTAAATAACTAACGTGCGATTACTTACTTAATTAATGTATTG
ATTTTTTATATATAGATTAATTTTGATAGCTGAAAATATTGGAAGAGTTATTTTACCACT
TAGAAGTAGATGCCTATTAATTAGAGTTGCTGCACCCTCAGAGCAAGATGTTAAAGCTGT
TGTTAGAAAGCTTAATAATGAAAAGAATTTAAATATACCTGATGATCTAGCTTGCAAATT
CGCAAAATCATGTGATTATAATTTAAGAGCAGTCATTTTAAATTTGCAAACACAAAAGCT
ACTCAAAAGTACTTACAACAATTCTATGGAGGTATAAGAGCCTGAATGGAAGAAAGAAAT
TAAAAATATCGCAGGAATTATCAAAGAGCATTAAAATCCAGCAAAGTAATTTCATCATAT
CTATTAATATAATTTCTAGTTTTAAACAAACACAAAGTTTCAATTCATATTTTATTAAGA
AAGAAACTTATTTGCTAAAATATTTCCATAAAATAAATATTTTGATCATTTAATTTTAAT
CGGAATCATAAAAAATATTTCGTATTAAGTATTCTTCAAAAAAGTAACAGATATATTTTT
AGAGAAACCTTAAACCTTTAGATATTAGACCATTATTAGATAAATTGATTGAGCTATTTA
ATTTAATTCGATAAAGTTAATGAATTACATAGATTAATTCAATCTTTGTTTGATCAAAAT
AAAATTTTGCTTATTATCAACACATAGTTAGTTATTTTATTATCAACATCAGCCAATATA
TATTGATCAATTTTTAATCATCTTAACTTAATTTCAAACTTGAAAAACACTAAATCAAAA
ATTTTTATTGTTCACTCATTCAATCACTCTCATACACATTTACTGTTGAAATGTAATATT
TAATTTAAAGCAAGACGTCAGAGTAAATAAAATTTGATCAAGCTTAACTTACTTTTGATT
TAAAAAAATAAAATATTGACACTTTTTATATGAGTTTTATCTAAATAAATTAGGTTAAAA
GAAATTAGAAGTAAATTTTATGACTTATTGGTAAATTGCATACCAGGAGATATAATTATA
AAGAATTTGATGTACAGTCTTCTTGATTTAATTGACCAAAATGATGTACATACTAAATAA
GAAATCATATACTATGCTGCTCACCATGAGAATTTGATGAATATGGGATCAAAGCCTGTC
TTCCACTTAGAAGCATTTGCTGCATAGTGCATGCTAAGCTACAAGAAATCTATATTAAAA
TTAAAAGATTGA