Identifiers and Description
Gene Model Identifier
TTHERM_00106890Standard Name
RFA1 (Homolog of budding yeast RFA1 and mouse RPA1)Aliases
PreTt23083 | 7.m00532Description
RFA1 replication protein complex A largest subunit; Encodes Replication Protein A (RPA). Protein involved in recombination and DNA repairGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Biological Process
- DNA repair (ISA) | GO:0006281 | Ref:18522989
- DNA recombination (ISA) | GO:0006310 | Ref:18522989
Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 11.9%
TetraMine Data
TTHERM_00106890
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_00409.1 9.997093137033517e-262 hypothetical protein (659 aa)
Oxytricha Contig5713.0.g13 4.000054831110256e-33 Replication factor-A C termina
l domain
SGD YAR007C 6.001249495680822e-29 RFA1 Subunit of heterotrimeric
Replication Protein A (RPA),
which is a highly conserved si
ngle-stranded DNA binding prot
ein involved in DNA replicatio
n, repair, and recombination
WormBase WBGene00017546 1.9993007828132465e-27 locus:rpa-1 Probable replica
tion factor A 73 kDa subunit
status:Confirmed UniProt:Q1
9537 protein_id:CCD62042.1
DictyBase DDB_G0289513 0.0000000000599805963605737 rfa1 on chromosome: 5 position
2891660 to 2893699
Stentor Coeruleus SteCoe_15423 0.0000000001026187963170189
General Information
No Data fetched for General Information
Associated Literature
- Ref:20363756: Min B, Collins K (2010) Multiple mechanisms for elongation processivity within the reconstituted tetrahymena telomerase holoenzyme. The Journal of biological chemistry 285(22):16434-43
Sequences
>TTHERM_00106890(coding)
ATGGTTACTCAATTAACAAAAAATGCTATTGATTCTCTAATAAATAGCACTAATCCTGAT
GAATAGTATGTTATTCAAGTTTTAAAAGCTCCTCAATCTGTTGCTGAAAATCTTTTCAAG
ATTTGCATTTCTGATGGCTTTTGCAAATTCAAGAAAGGATATTTCGTTAGTGATGCTGCT
ACCAAATGCCAAGATTTGAAGGATCTCTGTATTATCAAATGCAAAAAATATATTGATGAC
TCAAACCACGATAAGGAAAGAATTATTATCTCTAACTACGAATTAATATATTCTAATATC
TAAGAGCAAATTGGAAAACCAATCGAATACAAATAATACAAGTCAAGTGGATTCTCTAAT
CCAGAAGGATCAACTGTAATTCCCTCATAATACTTGAGCAGAAACGCTTAAATACTTCAA
TAAAATTAAGTTTCTTAACCTAAGCAAATGGTAACTCCTCCAGTTAGCAACATAAATAAG
CCTACTCCTGCTGTAAATAACACATTTGCTTAAAAACCAGCAGTTACAAACTAAAACATT
TAAAGAGTAAACTAGAATCCATAACAAATGAACAAAACTGCACCTGTAAAGCAAAATAAT
AATAATAACAATAATAACAATGGCAACAACAAAAATAATTCTAGTTTGTAGATTTCTACT
GATGGAGATGAGTAAAATTTGGAATACATTAGAAACTTATAGCCAAATGGTTAACCATAA
ACAATCAAAGTTAGAATCACCAAAAAGGGTGATTTGAAAAGCTTTAAGGAAAAGTAAGGA
AAACTCTTTTCAATAGATGTTATTGATAAGTTTGGAGACGAATGTAGTATTTCTTTCTTC
AACGAAATAGCTGAATAGTATGATGGCTTATTTAAAGTAGGTTAAGTTATAGTCTTGAAA
TAATTTTCAGTGAAAGTCAACAATAATCATCAATACAATAAGGGAGATCACACTGTAACT
GTCAATAAAGAGAGTAAAATATTGATATGTCAAGAAGATCCATCTATTCCTATGATCAAA
TTAAATAGATAATTCATTTAAGATATGTAGAATAAATAGAAAGGAGATTTAATCGATTTG
ATTGTTGTTGTAAAGGCAGACACAGAAGTTAAAACCATGATCTTAAAGAAAGATAATTAA
TAATAATCTAAAAGAGACATAATATCATTTGATGAATCTCTAATTGAAACAGAAATCACA
CTCTGGGGAGAAACTGCTAAAGACTATGATGCAAAGTAGGGAGATATCATTGTATTTAAA
GATGCCAAAATAGGTGAATTTAAAGATAAAAAGTAAATTAATATCGGATATGGAACATAA
ATCTTCATGAATCCAGATGAATAACTCTTCCCATAGATCCATGATGTCAAAAAATGGTAC
CTAAGCTTAAATTCCGACTAATTAAGCACTATTCAAAAGGCATAAGGAAATGATACTGGT
CCTAGAGAAGTAACTAGCTTTGAATCTTCTCTAAACATTTTGAAAGAAGAAATTAAAAAC
CTTTAAACTGACCCAGAAATGAAAATTTGGAAAGAAATTCGTGGTTAAATTATGTACATT
AAAGATACTCCTCTTTATTATAATGCTTGTTTTAGTTGCAAAAAGAAAATCGCACGTAAT
AACGAAGTATGGACTTGCATAAATTGCAATAAAGATTTTAATGAACCTGACTCTAGATAT
ATTCTCTCCCTCAATATAAGTGACTCTACAGATACTATTTGGGTAAGTGCATTCGATGAA
GTAGGTCAAAAAATTCTTGGTAAATTTATTTTTTAAAAGTTAAACTAAGTTAATTTATTT
TTATCATATTTAATTAACTTATTAATTAAACAGGTGTTAAGGGTGATGTATTTAGATATG
CTGATGAAGATACAGAACACGGTACAGAAACAAAAAAGAAATTGCTTATGGCTGCCTAAA
ATAAGGAATATAGATTCCTGTTACTTACTAAATAAGAAAGAGACTAAAATGGCAACGCCA
GAGATAAGACAGTTATTCATGCTATAAAAGACTTTTAACCTGCTTATGAGGCCAAAAAGA
TCATCAATTCTTTGGAGAAATTTATGGTGA>TTHERM_00106890(protein)
MVTQLTKNAIDSLINSTNPDEQYVIQVLKAPQSVAENLFKICISDGFCKFKKGYFVSDAA
TKCQDLKDLCIIKCKKYIDDSNHDKERIIISNYELIYSNIQEQIGKPIEYKQYKSSGFSN
PEGSTVIPSQYLSRNAQILQQNQVSQPKQMVTPPVSNINKPTPAVNNTFAQKPAVTNQNI
QRVNQNPQQMNKTAPVKQNNNNNNNNNGNNKNNSSLQISTDGDEQNLEYIRNLQPNGQPQ
TIKVRITKKGDLKSFKEKQGKLFSIDVIDKFGDECSISFFNEIAEQYDGLFKVGQVIVLK
QFSVKVNNNHQYNKGDHTVTVNKESKILICQEDPSIPMIKLNRQFIQDMQNKQKGDLIDL
IVVVKADTEVKTMILKKDNQQQSKRDIISFDESLIETEITLWGETAKDYDAKQGDIIVFK
DAKIGEFKDKKQINIGYGTQIFMNPDEQLFPQIHDVKKWYLSLNSDQLSTIQKAQGNDTG
PREVTSFESSLNILKEEIKNLQTDPEMKIWKEIRGQIMYIKDTPLYYNACFSCKKKIARN
NEVWTCINCNKDFNEPDSRYILSLNISDSTDTIWVSAFDEVGQKILGKFIFQKLNQVNLF
LSYLINLLIKQVLRVMYLDMLMKIQNTVQKQKRNCLWLPKIRNIDSCYLLNKKETKMATP
EIRQLFMLQKTFNLLMRPKRSSILWRNLW>TTHERM_00106890(gene)
ATGGTTACTCAATTAACAAAAAATGCTATTGATTCTCTAATAAATAGCACTAATCCTGAT
GAATAGTATGTTATTCAAGTTTTAAAAGCTCCTCAATCTGTTGCTGAAAATCTTTTCAAG
TAATTTAATTGATTGATCGATTGAAAAAAACTAATTTTATTCATTTCTTTTTTTTGTTGA
CAAATAGGATTTGCATTTCTGATGGCTTTTGCAAATTCAAGAAAGGATATTTCGTTAGTG
ATGCTGCTACCAAATGCCAAGATTGTAATTAATTTTTCTTAATTTTTTGTGAAGAATTGT
ATATGGAAAAGTACTATCATTTTTAACTCTACTTTAATAATTTAATAGTGAAGGATCTCT
GTATTATCAAATGCAAAAAATATATTGATGACTCAAACCACGATAAGGAAAGAATTATTA
TCTCTAACTACGAATTAATATATTCTAATATCTAAGAGCAAATTGGAAAACCAATCGAAT
ACAAATAATACAAGTCAAGTGTAATAAAATATTTCTAAAGTTCTATATAATTTATTTTAT
TCTTTGCTACTTGATCAAAAATGCTCTTTAAAGGGAGTTTTCAAGATATGGCAAAAAAAT
AAAAATATGTTCTTGAAAATTAATAATTTTTAAATTAAATATAAAAGGGATTCTCTAATC
CAGAAGGATCAACTGTAATTCCCTCATAATACTTGAGCAGAAACGCTTAAATACTTCAAT
AAAATTAAGTTTCTTAACCTAAGCAAATGGTAACTCCTCCAGTTAGCAACATAAATAAGC
CTACTCCTGCTGTAAATAACACATTTGCTTAAAAACCAGCAGTTACAAACTAAAACATTT
AAAGAGTAAACTAGAATCCATAACAAATGAACAAAACTGCACCTGTAAAGCAAAATAATA
ATAATAACAATAATAACAATGGCAACAACAAAAATAATTCTAGTTTGTAGATTTCTACTG
ATGGAGATGAGTAAAATTTGGAATACATTAGAAACTTATAGCCAAATGGTTAACCATAAA
CAATCAAAGTTAGAATCACCAAAAAGGGTGATTTGAAAAGCTTTAAGGAAAAGTAAGGAA
AACTCTTTTCAATAGATGTTATTGATAAGTTTGGAGACGAATGTAGTATTTCTTTCTTCA
ACGAAATAGCTGAATAGTATGATGGCTTATTTAAAGTAGGTTAAGTTATAGTCTTGAAAT
AATTTTCAGTGAAAGTCAACAATAATCATCAATAGTAAATTAATTTATTTAAGTTTTAGC
AATTACTATTACATAATATTTAATAAATAGCAATAAGGGAGATCACACTGTAACTGTCAA
TAAAGAGAGTAAAATATTGATATGTCAAGAAGATCCATCTATTCCTATGATCAAATTAAA
TAGATAATTCATTTAAGATATGTAGAATAAATAGAAAGGAGATTTAATCGATTTGATTGT
TGTTGTAAAGGCAGACACAGAAGTTAAAACCATGATCTTAAAGAAAGATAATTAATAATA
ATCTAAAAGAGACATAATATCATTTGATGAATCTCTAATTGAAACAGAAATCACACTCTG
GGGAGAAACTGCTAAAGACTATGATGCAAAGTAGGGAGATATCATTGTATTTAAAGATGC
CAAAATAGGTGAATTTAAAGATAAAAAGTAAATTAATATCGGATATGGAACATAAATCTT
CATGAATCCAGATGAATAACTCTTCCCATAGATCCATGATGTCAAAAAATGGTACCTAAG
CTTAAATTCCGACTAATTAAGCACTATTCAAAAGGCATAAGGAAATGATACTGGTCCTAG
AGAAGTAACTAGCTTTGAATCTTCTCTAAACATTTTGAAAGAAGAAATTAAAAACCTTTA
AACTGACCCAGAAATGAAAATTTGGAAAGAAATTCGTGGTTAAATTATGTACATTAAAGA
TACTCCTCTTTATTATAATGCTTGTTTTAGTTGCAAAAAGAAAATCGCACGTAATAACGA
AGTATGGACTTGCATAAATTGCAATAAAGATTTTAATGAAGTAATATTTTTTCTTATTCA
TCTTTAAAATTTTAGTTAATAAAATTAATTTTATTAAAATATAATTGAATTTATTTTAAA
TAATAATTTTATTAGCCTGACTCTAGATATATTCTCTCCCTCAATATAAGTGACTCTACA
GATACTATTTGGGTAAGTGCATTCGATGAAGTAGGTCAAAAAATTCTTGGTAAATTTATT
TTTTAAAAGTTAAACTAAGTTAATTTATTTTTATCATATTTAATTAACTTATTAATTAAA
CAGGTGTTAAGGGTGATGTATTTAGATATGCTGATGAAGATACAGAACACGGTACAGAAA
CAAAAAAGAAATTGCTTATGGCTGCCTAAAATAAGGAATATAGATTCCTGTTACTTACTA
AATAAGAAAGAGACTAAAATGGCAACGCCAGAGATAAGACAGTTATTCATGCTATAAAAG
ACTTTTAACCTGCTTATGAGGCCAAAAAGATCATCAATTCTTTGGAGAAATTTATGGTGA