Identifiers and Description

Gene Model Identifier

TTHERM_00421200

Standard Name

REX1 (RNA exonuclease REX1)

Aliases

PreTt07244 | 46.m00299 | 3679.m00149 | RNH70

Description

REX1 exonuclease

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• 3'-5' exonuclease activity (IEA) | GO:0008408
• nucleic acid binding (IEA) | GO:0003676

Biological Process

• nucleobase-containing compound metabolic process (IEA) | GO:0006139

Domains

• ( PF01372 ) Melittin
• ( PF00929 ) exonuclease
• ( PF01612 ) 3'-5' exonuclease
• ( TIGR00073 ) hydrogenase accessory protein HypB

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.8%

TetraMine Data

TTHERM_00421200

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_10952.1	9.997093137033517e-262	exonuclease (584 aa)
SGD	YGR276C	1.9994920269952867e-34	RNH70 3-5 exoribonuclease; req uired for maturation of 3 ends of 5S rRNA and tRNA-Arg3 from dicistronic transcripts
DictyBase	DDB_G0291590	9.99723014177113e-33	rexo1 on chromosome: 6 positio n 580025 to 582109
WormBase	WBGene00015462	2.0008113830639685e-30	status:Confirmed UniProt:O16 312 protein_id:CCD63091.1
Oxytricha	Contig22416.0.g98	2.000769134519826e-18	Exonuclease
Stentor Coeruleus	SteCoe_36101	0.0000000000006914400106940203

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00421200(coding)
ATGGAAAAACCAAGCTAATAAGGAACATATGTTTCAATATTCTAGTAACTACAAAGCTAA
AAAAGCTAGACAACAGGAAGCTCATCAATATTTAGTGGCTTAATGAAAACATAGTCTAGT
GATATTATATAAACATCTTCATAAAAGTCTAGCAAAAAAAATAAAAAACCTAACTTATAA
GATTTAGAATAAAGCTCAACTACTCTGAAAAAGATACAAACTAGTTAAGATCAGGCACCA
AAAGATGAATGTGAAATATCTTAGGAATCAATCAATAATAAATAAACAAGCAAATAGGAG
ATAAAAAATAAAATTGAAATAGTTGATCATGCTAAACCCCGCAAATAAACATCAACAAGA
GTATTTTAAAGTTTACTGTAATGGTTATTTACTAAATAAGGAATAAATCCACTTTGGATT
ATGATAGAAGATAGACACCTAATTTAGAATTTTGTATATATTACATTAACTGTACCTCCT
GATTTTGAAAAGCGCTTGTTAGCTAAATAGGATTTTCCTTTTTTAGGTTAATATTATGAT
TAGAAAAATATTGCAGTTTTTAAAGAAAGAACAGTTCAAAATGAAGATAATTATTGGCAT
TCCCTATTCTAAACAAAGTTAACAGAAGATATTTCTCTTCCACTCTTTAACAAAAATACA
GTCTCTCCCTAATAATAAATAAACTAAGAGTAGTATTAAGCAATGACTTATGAAGAAAAA
CTATATTATAAATATTCATAATTTTGTCATTCTAAATAGACTCTTAAGAATAATTTGTAT
CCTACTGAGAGTGAAGACTTTCCTAATTATGTTAGCTCAACTGAGAGTACATTAAAATTT
GACACAGTTAAATTTGAAAACAAAATTCTTGGATTAGATTGTGAAATGGTTTCAACTGAG
TATGGTTTAGAGCTTGCAAGAATAAGTTTAGTTAATTTCGATGGTGAAGTTTTGATAGAC
TAACTGGTAAAAACGCCAAATAGGATTATAAATTATAACACTTAATATAGTGGAATAACA
TAAGAAATGTTAAAAGATGTAAAAGTAGATTTACAGTAAGCACAGAAACTACTATTTTAG
TATGTTTGCTAAGACACCATTCTCATAGGACATTCTTTAGAGAATGATTTAGTAGCTATG
CAAGTAATTCATAACAAGGTTATAGACACAAGTATATTATTTTTGACAAAGAATGAAAGA
AAGCTAAAATTAAAGGATTTGGCCTAAAAATTTTTGAATTGCAAAATTTAGTAAGGTTCT
CACTGTCCTTCAGAAGATGCAAAAAGTGCATTAAGCTTAGCAAAATTGAGAATTGAAATA
TTAGAAAAGTTTGATAATTCTAAAATAATAAGTGGAACCAGCTAAATTACACTAGATTTA
CTCGATTAAATTATAAAAACAAATAACACTATTTTAATCTTAGACGAAACTGACTAATTA
ATGAGGTTACTTTAATATGGAGTACATTATGATGAGTTAAAGCAAAATAGTAACGAATAA
AGATTAGATAAAATTGTTAAATGGGTGAAGAAGAAAAAGAAAGAAAATTGCATCATTCCA
AGAATAATAATGACATAATTAATAAAAGAGAAAAAATAAATGAGCTATAAAGACTTAGAT
AGTAAATTCAAAGAAATAGTAGATAACTCTCCTTAAAATTCAGTATTTGCTTTCAATTTT
GAAATAGAAGATGATAAATCTTTAAACAACAGTTTAAATGTATCTAACCCATTTTGCATA
TTTGTGTCCATTTGA

>TTHERM_00421200(protein)
MEKPSQQGTYVSIFQQLQSQKSQTTGSSSIFSGLMKTQSSDIIQTSSQKSSKKNKKPNLQ
DLEQSSTTLKKIQTSQDQAPKDECEISQESINNKQTSKQEIKNKIEIVDHAKPRKQTSTR
VFQSLLQWLFTKQGINPLWIMIEDRHLIQNFVYITLTVPPDFEKRLLAKQDFPFLGQYYD
QKNIAVFKERTVQNEDNYWHSLFQTKLTEDISLPLFNKNTVSPQQQINQEQYQAMTYEEK
LYYKYSQFCHSKQTLKNNLYPTESEDFPNYVSSTESTLKFDTVKFENKILGLDCEMVSTE
YGLELARISLVNFDGEVLIDQLVKTPNRIINYNTQYSGITQEMLKDVKVDLQQAQKLLFQ
YVCQDTILIGHSLENDLVAMQVIHNKVIDTSILFLTKNERKLKLKDLAQKFLNCKIQQGS
HCPSEDAKSALSLAKLRIEILEKFDNSKIISGTSQITLDLLDQIIKTNNTILILDETDQL
MRLLQYGVHYDELKQNSNEQRLDKIVKWVKKKKKENCIIPRIIMTQLIKEKKQMSYKDLD
SKFKEIVDNSPQNSVFAFNFEIEDDKSLNNSLNVSNPFCIFVSI

>TTHERM_00421200(gene)
ATGGAAAAACCAAGCTAATAAGGAACATATGTTTCAATATTCTAGTAACTACAAAGCTAA
AAAAGCTAGACAACAGGAAGCTCATCAATATTTAGTGGCTTAATGAAAACATAGTCTAGT
GATATTATATAAACATCTTCATAAAAGTCTAGCAAAAAAAATAAAAAACCTAACTTATAA
GATTTAGGTAGAAATAAGTTAAAAATATAACGAAATTAATATATCTTTTTAAAATATATA
AGAATAAAGCTCAACTACTCTGAAAAAGATACAAACTAGTTAAGATCAGGCACCAAAAGA
TGAATGTGAAATATCTTAGGAATCAATCAATAATAAATAAACAAGCAAATAGGAGATAAA
AAATAAAATTGAAATAGTTGATCATGCTAAACCCCGCAAATAAACATCAACAAGAGTATT
TTAAAGTTTACTGTAATGGTTATTTACTAAATAAGGAATAAATCCACTTTGGATTATGAT
AGAAGTAAATCATATTCGAGAGTTAATTTTTATTTACTTATTAATTCTTAATATCTAAAG
GATAGACACCTAATTTAGAATTTTGTATATATTACATTAACTGTACCTCCTGATTTTGAA
AAGCGCTTGTTAGCTAAATAGGATTTTCCTTTTTTAGGTTAATATTATGATTAGAAAAAT
ATTGCAGTTTTTAAAGAAAGAACAGTTCAAAATGAAGATAATTATTGGCATTCCCTATTC
TAAACAAAGTTAACAGAAGATATTTCTCTTCCACTCTTTAACAAAAATACAGTCTCTCCC
TAATAATAAATAAACTAAGAGTAGTATTAAGCAATGACTTATGAAGAAAAACTATATTAT
AAATATTCATAATTTTGTCATTCTAAATAGACTCTTAAGAATAATTTGTATCCTACTGAG
AGTGAAGACTTTCCTAATTATGTTAGCTCAACTGAGAGTACATTAAAATTTGACACAGTT
AAATTTGAAAACAAAATTCTTGGATTAGATTGTGAAATGGTATTCGAAAATTATTATTAA
TAATAAATAAATAAATATTAAAGTGGGTTAATTAAATATTAGGTTTCAACTGAGTATGGT
TTAGAGCTTGCAAGAATAAGTTTAGTTAATTTCGATGGTGAAGTTTTGATAGACTAACTG
GTAAAAACGCCAAATAGGATTATAAATTATAACACTTAATATAGTGGAATAACATAAGAA
ATGTTAAAAGATGTAAAAGTAGATTTACAGTAAGCACAGAAACTACTATTTTAGTATGTT
TGCTAAGACACCATTCTCATAGGACATTCTTTAGAGAATGATTTAGTAGCTATGCAAGTA
TTTATTTAGTTATTTTTTAGGTCATAATTATATATAAATAATCTCATGAAAAAATTAAAG
GTAATTCATAACAAGGTTATAGACACAAGTATATTATTTTTGACAAAGAATGAAAGAAAG
CTAAAATTAAAGGATTTGGCCTAAAAATTTTTGAATTGCAAAATTTAGTAAGGTTCTCAC
TGTCCTTCAGAAGATGCAAAAAGTGCATTAAGCTTAGCAAAATTGAGAATTGAAATATTA
GAAAAGTTTGATAATTCTAAAATAATAAGTGGAACCAGCTAAATTACACTAGATTTACTC
GATTAAATTATAAAAACAAATAACACTATTTTAATCTTAGACGAAACTGACTAATTAATG
AGGTTACTTTAATATGGAGTACATTATGATGAGTTAAAGCAAAATAGTAACGAATAAAGT
ATTTTACACTAATTAATTAATGATATAAGCTAAATAAAATTTTATTTTAAATTAGGATTA
GATAAAATTGTTAAATGGGTGAAGAAGAAAAAGAAAGAAAATTGCATCATTCCAAGAATA
ATAATGACATAATTAATAAAAGAGAAAAAATAAATGAGCTATAAAGACTTAGATAGTAAA
TTCAAAGAAATAGTAGATAACTCTCCTTAAAATTCAGGTATATAAATCCATATCTGATTC
ATTCATTAAATCTTAATTTTATTCTAAAAAATAGTATTTGCTTTCAATTTTGAAATAGAA
GATGATAAATCTTTAAACAACAGTTTAAATGTATCTAACCCATTTTGCATATTTGTGTCC
ATTTGA