Identifiers and Description
Gene Model Identifier
TTHERM_00094040Standard Name
RDN1 (Rdr1-associated nucleotidyltransferase 1)Aliases
PreTt16559 | 6.m00633 | 3836.m02217Description
RDN1 RNA-dependent RNA polymerase-associated nucleotidyltransferase; associated with Rdr1; exhibits terminal RNA uridine transferase activity in vitroGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
No Data fetched for Gene Ontology Annotations
Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 9.7%
TetraMine Data
TTHERM_00094040
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_02566.1 1.000008670162283e-147 hypothetical protein (538 aa)
Oxytricha Contig10883.0.g40 0.00000000000020009182674645818 Nucleotidyltransferase domain
DictyBase DDB_G0278425 0.000000000010004361180063202 DDB_G0278425 on chromosome: 3
position 866714 to 870080
WormBase WBGene00009284 0.0000000020002373268528243 status:Partially_confirmed U
niProt:G5EFM8 protein_id:CAB
07197.1
General Information
No Data fetched for General Information
Associated Literature
- Ref:22706992: Talsky KB, Collins K (2012) Strand-asymmetric endogenous Tetrahymena small RNA production requires a previously uncharacterized uridylyltransferase protein partner. RNA (New York, N.Y.) 18(8):1553-62
- Ref:20622019: Talsky KB, Collins K (2010) Initiation by a eukaryotic RNA-dependent RNA polymerase requires looping of the template end and is influenced by the template-tailing activity of an associated uridyltransferase. The Journal of biological chemistry 285(36):27614-23
- Ref:19451546: Lee SR, Talsky KB, Collins K (2009) A single RNA-dependent RNA polymerase assembles with mutually exclusive nucleotidyl transferase subunits to direct different pathways of small RNA biogenesis. RNA (New York, N.Y.) 15(7):1363-74
Sequences
>TTHERM_00094040(coding)
ATGAATATTAATTTGACTGATAAGTAAAAAATATATAGCAATGTCATCAAAAATGCATTA
GAAAAAATTTACAAAAATGATAAAGTAGATATTTTAAACTTAATTAATACAAGCTTGGGC
TGTTAGACTATAGAAATTAAATACGATGTGGAATTCCACTAGTTACTTGCTCAATATTTT
CAAAATATGCGTTATTAAGATACAAAGGATAAAGAAGATGTGCTTTAAAAACTGCTTGAG
TAATGCCTCAGTCAAAATCTAATTTTAAATACTTAAAAAAGTAAACTTTCTAAACAAATC
ATCATTTTGAAGCGCCTAAGAAGAATTTAATAAAAGCTTAAGGATGACCCAAAAAATGCT
TTGGATCATTTGATAGAAGAATACGACTAAGAGGAGGAAAATTGTGATGAAGAAGTGCTA
TTATAGCGTTTCGAATAGGATAAAACAGACTTAAGAATGCAAATAGAAGACAATGTTAAA
GATTTAAAAAAAGAAAATATAAAATATCTGTTGTTGAAAAAATAAAATAATTAAGAAAAA
AATATTTAAAATGAATAAAATTTAGAATAAATTCTTTTAGATGTATATAATCAGCAAAAA
ATTGAAGAGAGTTTCTCAAAAAGACTTCTATAAGAAGTTAATTTTATCAGAAAGATCATT
AGTATGATGAGGCTTAAGGAGTTATTTGGCTTAGAGTATGTCACAGTATAGCCTTATGGT
TCTATAGTTAGTGGATTTGCTTAAAAATCTAGCGATGTTGATATCAGTATTAATACTAAC
TGCTATATAGATGAGAGCTCATTTATATAACTTCTTCATAACTTCATAAAGCAGTATTGC
AGTAATAAATCAATTAAGAATGTTGAAACTGAGCCAGTTCTTCAGGCCTAAACTCCGTTG
CTCAAATACACAAGGAAAGATACAGTAGATCAATAATAAATAAAAATAGATATAGATATT
TGTGTTAACAATATCTTGGGATGCACTAATTCATTAATGCTTTACACTCTTTCCTAACTG
CATCCAAAAATTTAATAATTAGGAATTATCATTAAACACTGGGCTAAGTAAAGAGGTGTA
TCCAGTAAAAGTCACTTATCCTCCTATTCCTTTATTTTGATGATGTTTTCCTTCCTTTTC
AGAGAAAAGATATTGAACTCAGAGTTTGTCAAAAAAAGTAAAAGTAAAGAAAATTAGTGT
TAAGTCAAAATTAAAAGAAAAAAAAAGGATGGTGAATAAATATTTTAAACTAATTTATAC
TTTTATAGCAATGTAGAAGACTTAAAAATGAAATTAGCTATATGGAGAAAAGAAAAAAAC
TTGCCTTCCTTAGATGATGTATCACTAAGCTAACTTTTTATAGATTTTATAAAATTCTAT
TAATCTAGCTTTAATTTTAAAGACAAGAGGTTTATTTCCATTTTTAACTTTGATGTCAAT
TACAGCAATAACAATTTTAAATATGAACTTTATGATGAAAATTATTACTTCAATATTGAA
GATCCATTTGATACTAAGCACAATCCTGGATAAAAAACTCAAAACAAATAAGAATAATAT
AAACAGGCCTTTGATGATGCTTTAAATTAAATTGAAAGTAAGTAATATAATCTGCTATTC
TCATCTAAATGA>TTHERM_00094040(protein)
MNINLTDKQKIYSNVIKNALEKIYKNDKVDILNLINTSLGCQTIEIKYDVEFHQLLAQYF
QNMRYQDTKDKEDVLQKLLEQCLSQNLILNTQKSKLSKQIIILKRLRRIQQKLKDDPKNA
LDHLIEEYDQEEENCDEEVLLQRFEQDKTDLRMQIEDNVKDLKKENIKYLLLKKQNNQEK
NIQNEQNLEQILLDVYNQQKIEESFSKRLLQEVNFIRKIISMMRLKELFGLEYVTVQPYG
SIVSGFAQKSSDVDISINTNCYIDESSFIQLLHNFIKQYCSNKSIKNVETEPVLQAQTPL
LKYTRKDTVDQQQIKIDIDICVNNILGCTNSLMLYTLSQLHPKIQQLGIIIKHWAKQRGV
SSKSHLSSYSFILMMFSFLFREKILNSEFVKKSKSKENQCQVKIKRKKKDGEQIFQTNLY
FYSNVEDLKMKLAIWRKEKNLPSLDDVSLSQLFIDFIKFYQSSFNFKDKRFISIFNFDVN
YSNNNFKYELYDENYYFNIEDPFDTKHNPGQKTQNKQEQYKQAFDDALNQIESKQYNLLF
SSK>TTHERM_00094040(gene)
ATGAATATTAATTTGACTGATAAGTAAAAAATATATAGCAATGTCATCAAAAATGCATTA
GAAAAAATTTACAAAAATGATAAAGTAGATATTTTAAACTTAATTAATACAAGCTTGGGC
TGTTAGACTATAGAAATTAAATACGATGTGGAATTCCACTAGTTACTTGCTCAATATTTT
CAAAATATGCGTTATTAAGATACAAAGGATAAAGAAGATGTGCTTTAAAAACTGCTTGAG
TAATGCCTCAGTCAAAATCTAATTTTAAATACTTAAAAAAGTAAACTTTCTAAACAAATC
ATCATTTTGAAGCGCCTAAGAAGAATTTAATAAAAGCTTAAGGATGACCCAAAAAATGCT
TTGGATCATTTGATAGAAGAATACGACTAAGAGGAGGAAAATTGTGATGAAGAAGTGCTA
TTATAGCGTTTCGAATAGGATAAAACAGACTTAAGAATGCAAATAGAAGACAATGTTAAA
GATTTAAAAAAAGAAAATATAAAATATCTGTTGTTGAAAAAATAAAATAATTAAGAAAAA
AATATTTAAAATGAATAAAATTTAGAATAAATTCTTTTAGATGTATATAATCAGCAAAAA
ATTGAAGAGAGTTTCTCAAAAAGACTTCTATAAGAAGTTAATTTTATCAGAAAGATCATT
AGTATGATGAGGCTTAAGGAGTTATTTGGCTTAGAGTATGTCACAGTATAGCCTTATGGT
TCTATAGTTAGTGGATTTGCTTAAAAATCTAGCGATGTTGATATCAGTATTAATACTAAC
TGCTATATAGATGAGAGCTCATTTATATAACTTCTTCATAACTTCATAAAGCAGTATTGC
AGTAATAAATCAATTAAGAATGTTGAAACTGAGCCAGTTCTTCAGGCCTAAACTCCGTTG
CTCAAATACACAAGGAAAGATACAGTAGATCAATAATAAATAAAAATAGATATAGATATT
TGTGTTAACAATATCTTGGGATGCACTAATTCATTAATGCTTTACACTCTTTCCTAACTG
CATCCAAAAATTTAATAATTAGGAATTATCATTAAACACTGGGCTAAGTAAAGAGGTGTA
TCCAGTAAAAGTCACTTATCCTCCTATTCCTTTATTTTGATGATGTTTTCCTTCCTTTTC
AGAGAAAAGATATTGAACTCAGAGTTTGTCAAAAAAAGTAAAAGTAAAGAAAATTAGTGT
TAAGTCAAAATTAAAAGAAAAAAAAAGGATGGTGAATAAATATTTTAAACTAATTTATAC
TTTTATAGCAATGTAGAAGACTTAAAAATGAAATTAGCTATATGGAGAAAAGAAAAAAAC
TTGCCTTCCTTAGATGATGTATCACTAAGCTAACTTTTTATAGATTTTATAAAATTCTAT
TAATCTAGCTTTAATTTTAAAGACAAGAGGTTTATTTCCATTTTTAACTTTGATGTCAAT
TACAGCAATAACAATTTTAAATATGAACTTTATGATGAAAATTATTACTTCAATATTGAA
GATCCATTTGATACTAAGCACAATCCTGGATAAAAAACTCAAAACAAATAAGAATAATAT
AAACAGGCCTTTGATGATGCTTTAAATTAAATTGAAAGTAAGTAATATAATCTGCTATTC
TCATCTAAATGA