Identifiers and Description

Gene Model Identifier

TTHERM_01207560

Standard Name

RDF1 (Rdr1-associated factor 1)

Aliases

PreTt09110 | 274.m00027

Description

Associated with Rdr1; involved in 23-24 nt small RNA metabolism

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.5%

TetraMine Data

TTHERM_01207560

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_20940.1	9.995951036711152e-55	hypothetical protein (615 aa)

General Information

No Data fetched for General Information

Associated Literature

1. Ref:19451546: Lee SR, Talsky KB, Collins K (2009) A single RNA-dependent RNA polymerase assembles with mutually exclusive nucleotidyl transferase subunits to direct different pathways of small RNA biogenesis. RNA (New York, N.Y.) 15(7):1363-74
2. Ref:19656801: Couvillion MT, Lee SR, Hogstad B, Malone CD, Tonkin LA, Sachidanandam R, Hannon GJ, Collins K (2009) Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila. Genes & development 23(17):2016-32

Sequences

>TTHERM_01207560(coding)
ATGGAAGTTTAAAGTAAACTCCTCGTAAACGAATAAGGCAGATAAATTAATGGCAGAATA
TCAGCCGCAATTTAAGAAATAAATAATTTTGGATTAGATAATATTGTATTGTTTTTGTGG
AACAGAGAAAGTTTAAAAATAGATGGAAATAATAATAATTAGATATATATAGGTAAAGAA
TCTTTAGACTACCCTATGCCAGACTCAGAAGTTGTAACAGATATGCTTTTGATTAATTAA
AATAAGTATTTAATAGTCTGCCTTAGCGATGGTCAGCTTTTCATAACCAAAAATAATATT
TAGTCCTTTCAAAATCAAAATCATATAATCATTTAATAAAAATAAAGTGATTTTTATGAT
GGTTATTGTAGAATTGCCTTTTTTCAGTATGAAAATTAAAAAGACCGCAAATAGAATAAA
TACTATTTGCTAGCTGTTGACTATAAAAATAAGATTTCCAAATACTCTTTCTCTTCAATT
GAAAACTGTTAAATTACAAATAGGGAAAAGTTAGCGAATTAATACATTTTTGTTTAATAT
GATTAAATTAATCAAGTCTTTTTAGCTATGGGTAGTGACCTAGCATTATATTGCTTTAAA
ATGAATGATTTAAATCATAATTTAGAATAATTTTAAATTTAATTTGATAAGGAGGACCTT
AAAAATTTAGGCATAATATCTGTAAAAGATTTTATTGCATTTGACTTTCAATATAAAGAC
GAAAAATATTAAATTTACATTCTTGGAAAATTGATAGGAATATTTAGTGTAAGTATGAAT
GATGTAGAGGATAACTAAAATAAACTAATTGCGCAAATTACATTTTTATTTGATCCTTTT
GAGAATGAAATTTGCAAATTTTGTGATAGAAATTATATATAAATTTTTAGTGACAAAAGA
AAAGAAAAATTTGATTCTTAAGAAATTACTGTAATATACGATAAACTTGCTCTTAAATTT
TATAACTAAGAAGATCAATTTTTAAAAATTTTTGACTTAAAAGATTTTAATGCTGATAAA
AATCTTAAGATTGATAAGTATATTTGTCTTTATGGAAACAGCTAAAATATTTCTTACAAT
ATCTTTAATTGCTCTGATTGTTAAAATATAGAGGATTCATTTAAGTAAATTAGCTGTGAC
AGAATATTTATCAATAAAGAAAAATGA

>TTHERM_01207560(protein)
MEVQSKLLVNEQGRQINGRISAAIQEINNFGLDNIVLFLWNRESLKIDGNNNNQIYIGKE
SLDYPMPDSEVVTDMLLINQNKYLIVCLSDGQLFITKNNIQSFQNQNHIIIQQKQSDFYD
GYCRIAFFQYENQKDRKQNKYYLLAVDYKNKISKYSFSSIENCQITNREKLANQYIFVQY
DQINQVFLAMGSDLALYCFKMNDLNHNLEQFQIQFDKEDLKNLGIISVKDFIAFDFQYKD
EKYQIYILGKLIGIFSVSMNDVEDNQNKLIAQITFLFDPFENEICKFCDRNYIQIFSDKR
KEKFDSQEITVIYDKLALKFYNQEDQFLKIFDLKDFNADKNLKIDKYICLYGNSQNISYN
IFNCSDCQNIEDSFKQISCDRIFINKEK

>TTHERM_01207560(gene)
ATGGAAGTTTAAAGTAAACTCCTCGTAAACGAATAAGGCAGATAAATTAATGGCAGAATA
TCAGCCGCAATTTAAGAAATAAATAATTTTGGATTAGATAATATTGTATTGTTTTTGTGG
AACAGAGAAAGTTTAAAAATAGATGGAAATAATAATAATTAGATATATATAGGTAAAGAA
TCTTTAGACTACCCTATGCCAGACTCAGAAGTTGTAACAGATATGCTTTTGATTAATTAA
AATAAGTATTTAATAGTCTGCCTTAGCGATGGTCAGCTTTTCATAACCAAAAATAATATT
TAGTCCTTTCAAAATCAAAATCATATAATCATTTAATAAAAATAAAGTGATTTTTATGAT
GGTTATTGTAGAATTGCCTTTTTTCAGTATGAAAATTAAAAAGACCGCAAATAGAATAAA
TACTATTTGCTAGCTGTTGACTATAAAAATAAGATTTCCAAATACTCTTTCTCTTCAATT
GAAAACTGTTAAATTACAAATAGGGAAAAGTTAGCGAATTAATACATTTTTGTTTAATAT
GATTAAATTAATCAAGTCTTTTTAGCTATGGGTAGTGACCTAGCATTATATTGCTTTAAA
ATGAATGATTTAAATCATAATTTAGAATAATTTTAAATTTAATTTGATAAGGAGGACCTT
AAAAATTTAGGCATAATATCTGTAAAAGATTTTATTGCATTTGACTTTCAATATAAAGAC
GAAAAATATTAAATTTACATTCTTGGAAAATTGATAGGAATATTTAGTGTAAGTATGAAT
GATGTAGAGGATAACTAAAATAAACTAATTGCGCAAATTACATTTTTATTTGATCCTTTT
GAGAATGAAATTTGCAAATTTTGTGATAGAAATTATATATAAATTTTTAGTGACAAAAGA
AAAGAAAAATTTGATTCTTAAGAAATTACTGTAATATACGATAAACTTGCTCTTAAATTT
TATAACTAAGAAGATCAATTTTTAAAAATTTTTGACTTAAAAGATTTTAATGCTGATAAA
AATCTTAAGATTGATAAGTATATTTGTCTTTATGGAAACAGCTAAAATATTTCTTACAAT
ATCTTTAATTGCTCTGATTGTTAAAATATAGAGGATTCATTTAAGTAAATTAGCTGTGAC
AGAATATTTATCAATAAAGAAAAATGA